Wall clock time and date at job start Tue Mar 31 2020 14:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48509 * 109.46944 * 270.00344 * 3 2 1 5 5 H 1.48493 * 109.47235 * 30.00044 * 3 2 1 6 6 H 1.48498 * 109.47105 * 150.00271 * 3 2 1 7 7 C 1.38814 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99750 * 189.09477 * 7 2 1 9 9 N 1.36935 * 120.00030 * 9.10021 * 7 2 1 10 10 C 1.48151 * 127.83901 * 15.56457 * 9 7 2 11 11 C 1.54389 * 104.61473 * 140.42261 * 10 9 7 12 12 H 1.09001 * 117.61415 * 242.76979 * 11 10 9 13 13 C 1.52994 * 118.12598 * 87.19269 * 11 10 9 14 14 H 1.09003 * 117.43916 * 14.46141 * 13 11 10 15 15 C 1.52997 * 117.44638 * 159.21444 * 13 11 10 16 16 N 1.46497 * 109.47213 * 184.99972 * 15 13 11 17 17 C 1.34785 * 119.99921 * 179.97438 * 16 15 13 18 18 O 1.21598 * 119.99546 * 359.97438 * 17 16 15 19 19 C 1.47512 * 119.99650 * 180.27511 * 17 16 15 20 20 C 1.41032 * 119.39776 * 359.72644 * 19 17 16 21 21 C 1.35189 * 121.65880 * 179.97438 * 20 19 17 22 22 C 1.41381 * 119.92916 * 359.97438 * 21 20 19 23 23 N 1.31923 * 134.39629 * 180.02562 * 22 21 20 24 24 N 1.39922 * 109.06486 * 179.97438 * 23 22 21 25 25 H 0.97004 * 124.98572 * 180.02562 * 24 23 22 26 26 C 1.33823 * 110.02514 * 359.97438 * 24 23 22 27 27 C 1.38534 * 107.83507 * 0.02562 * 26 24 23 28 28 C 1.38222 * 119.38946 * 179.44879 * 19 17 16 29 29 C 1.53004 * 60.55775 * 266.85879 * 13 11 10 30 30 H 1.08997 * 119.54085 * 248.22910 * 29 13 11 31 31 C 1.48150 * 127.83615 * 195.57492 * 9 7 2 32 32 H 0.97001 * 120.00054 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.40561 * 21.64194 * 10 9 7 34 34 H 1.08996 * 110.40847 * 259.20435 * 10 9 7 35 35 H 1.08994 * 109.47322 * 64.99590 * 15 13 11 36 36 H 1.09004 * 109.46732 * 305.00194 * 15 13 11 37 37 H 0.96993 * 120.00345 * 359.97438 * 16 15 13 38 38 H 1.07999 * 119.17242 * 359.97374 * 20 19 17 39 39 H 1.07998 * 120.03607 * 179.97438 * 21 20 19 40 40 H 1.08002 * 126.07809 * 180.02562 * 26 24 23 41 41 H 1.08003 * 120.32715 * 0.02562 * 28 19 17 42 42 H 1.08994 * 110.40311 * 338.36165 * 31 9 7 43 43 H 1.09002 * 110.40434 * 100.67905 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3386 -2.3805 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0637 -3.8160 -1.6193 12 1 -0.1485 -3.6861 -2.6806 13 6 -0.1184 -5.1924 -0.9766 14 1 -0.5428 -5.2259 0.0269 15 6 -0.5042 -6.3539 -1.8946 16 7 -0.7482 -7.5529 -1.0890 17 6 -1.1044 -8.7065 -1.6882 18 8 -1.2236 -8.7518 -2.8975 19 6 -1.3560 -9.9121 -0.8764 20 6 -1.2144 -9.8450 0.5252 21 6 -1.4340 -10.9214 1.3130 22 6 -1.8164 -12.1532 0.7337 23 7 -2.0963 -13.3505 1.2117 24 7 -2.4196 -14.2024 0.1499 25 1 -2.6634 -15.1369 0.2409 26 6 -2.3441 -13.5385 -1.0096 27 6 -1.9682 -12.2351 -0.7285 28 6 -1.7317 -11.0855 -1.5029 29 6 1.2896 -4.6127 -1.1266 30 1 1.9905 -5.0765 -1.8207 31 6 1.8197 -3.7546 0.0856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3433 -1.7011 -1.2926 34 1 -0.7317 -2.7500 0.1058 35 1 0.3067 -6.5468 -2.5968 36 1 -1.4086 -6.0963 -2.4459 37 1 -0.6534 -7.5166 -0.1244 38 1 -0.9233 -8.9100 0.9807 39 1 -1.3176 -10.8406 2.3836 40 1 -2.5412 -13.9464 -1.9900 41 1 -1.8398 -11.1198 -2.5770 42 1 2.9091 -3.7785 0.1073 43 1 1.4133 -4.1183 1.0294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978647144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:22 Heat of formation + Delta-G solvation = 121.989193 kcal Electronic energy + Delta-G solvation = -25594.966763 eV Core-core repulsion = 21836.600548 eV Total energy + Delta-G solvation = -3758.366215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73386 -39.88859 -38.63501 -37.00093 -34.97520 -33.34617 -32.57707 -31.33130 -30.70683 -29.47328 -27.40748 -26.94203 -25.28738 -24.21676 -23.02823 -21.13540 -21.06150 -20.72102 -19.85829 -19.24615 -18.63441 -17.80017 -17.04889 -16.77756 -16.02395 -15.46516 -15.11903 -15.04754 -14.66702 -14.42018 -14.32558 -14.05190 -13.67412 -13.43293 -13.18005 -13.09352 -12.76985 -12.63520 -12.06926 -11.93104 -11.81083 -11.22526 -11.06028 -10.83550 -10.79384 -10.75177 -10.59776 -10.25554 -10.10473 -10.04430 -9.72473 -9.39345 -9.27357 -9.12020 -8.91029 -8.61794 -8.05051 -6.86027 -5.79058 -3.13383 0.09501 1.10633 1.92783 2.18166 2.81940 3.13368 3.39121 3.44346 3.46186 3.66866 3.80621 4.12066 4.19564 4.46973 4.59580 4.67255 4.77215 4.89483 4.93620 5.11352 5.17710 5.33371 5.43151 5.46375 5.55113 5.70097 5.80712 5.81357 5.95314 5.96028 6.00369 6.04801 6.09237 6.26007 6.33485 6.42996 6.52679 6.57916 6.68437 6.73081 6.92946 7.08726 7.37550 7.52137 7.54581 7.73077 8.21192 8.22001 9.11892 9.74675 10.51872 11.35200 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.035536 B = 0.001865 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.745064 B =15011.312741 C =15434.471493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.183 3.817 11 C -0.162 4.162 12 H 0.102 0.898 13 C -0.153 4.153 14 H 0.103 0.897 15 C 0.155 3.845 16 N -0.719 5.719 17 C 0.560 3.440 18 O -0.548 6.548 19 C -0.174 4.174 20 C -0.051 4.051 21 C -0.109 4.109 22 C 0.119 3.881 23 N -0.308 5.308 24 N -0.423 5.423 25 H 0.445 0.555 26 C 0.104 3.896 27 C -0.222 4.222 28 C 0.036 3.964 29 C -0.172 4.172 30 H 0.107 0.893 31 C 0.156 3.844 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.194 0.806 41 H 0.141 0.859 42 H 0.048 0.952 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -28.503 -1.300 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.183 4.183 12 H 0.120 0.880 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.371 5.371 17 C 0.349 3.651 18 O -0.428 6.428 19 C -0.179 4.179 20 C -0.074 4.074 21 C -0.130 4.130 22 C -0.035 4.035 23 N -0.136 5.136 24 N -0.122 5.122 25 H 0.290 0.710 26 C -0.055 4.055 27 C -0.231 4.231 28 C 0.015 3.985 29 C -0.192 4.192 30 H 0.125 0.875 31 C 0.029 3.971 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.237 0.763 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.211 0.789 41 H 0.158 0.842 42 H 0.066 0.934 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.978 -28.927 -1.004 29.555 hybrid contribution 0.360 0.754 -0.278 0.880 sum -5.618 -28.173 -1.282 28.757 Atomic orbital electron populations 1.69899 1.05046 1.25415 1.55812 1.24899 0.95652 0.97977 1.01790 0.86107 0.78680 0.83252 0.77646 1.21499 1.21667 1.20553 1.19000 0.90815 0.82374 1.43291 0.90573 1.45151 1.13357 0.99997 1.73278 1.21085 0.86820 0.92755 0.93564 1.24177 1.02247 0.91651 1.00195 0.88031 1.22554 1.00508 0.94032 1.00155 0.87922 1.20887 1.01068 0.82163 0.92713 1.45948 1.69958 1.10032 1.11154 1.18122 0.76673 0.82988 0.87359 1.90770 1.52684 1.85156 1.14150 1.19493 1.10362 0.94468 0.93557 1.20711 0.96075 0.98410 0.92183 1.19750 1.04224 0.88920 1.00087 1.21087 0.97065 0.93109 0.92271 1.77686 1.27473 1.01037 1.07425 1.46364 1.48463 1.13108 1.04292 0.70993 1.22895 0.98139 0.92201 0.92277 1.19567 1.14954 0.94459 0.94155 1.20673 0.89434 0.88857 0.99574 1.24715 0.89716 1.02256 1.02487 0.87504 1.21717 0.97063 0.85844 0.92473 0.93559 0.89228 0.95847 0.91380 0.91061 0.76333 0.85031 0.84735 0.78932 0.84173 0.93376 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.86 55.49 0.60 -26.12 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.91 29.56 -169.99 -5.03 16.89 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 9 N -0.59 -15.14 3.38 -166.73 -0.56 -15.70 16 10 C 0.18 4.36 5.70 -2.41 -0.01 4.35 16 11 C -0.16 -3.03 6.77 -89.22 -0.60 -3.64 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 C -0.15 -2.32 5.34 -90.62 -0.48 -2.80 16 14 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 15 C 0.15 2.10 5.95 -4.04 -0.02 2.07 16 16 N -0.72 -8.50 5.50 -61.36 -0.34 -8.84 16 17 C 0.56 7.29 7.75 -12.48 -0.10 7.19 16 18 O -0.55 -8.92 16.26 5.28 0.09 -8.84 16 19 C -0.17 -1.86 5.86 -105.06 -0.62 -2.48 16 20 C -0.05 -0.46 9.39 -39.61 -0.37 -0.83 16 21 C -0.11 -1.00 10.05 -39.47 -0.40 -1.39 16 22 C 0.12 1.21 7.49 -82.98 -0.62 0.59 16 23 N -0.31 -2.99 12.69 33.30 0.42 -2.57 16 24 N -0.42 -2.29 7.17 30.87 0.22 -2.07 16 25 H 0.45 0.64 8.96 -182.73 -1.64 -0.99 16 26 C 0.10 0.52 12.09 -16.57 -0.20 0.32 16 27 C -0.22 -1.94 6.32 -105.23 -0.66 -2.60 16 28 C 0.04 0.35 9.64 -38.69 -0.37 -0.02 16 29 C -0.17 -2.97 7.03 -87.38 -0.61 -3.59 16 30 H 0.11 1.71 8.12 -51.93 -0.42 1.29 16 31 C 0.16 3.20 7.10 -0.57 0.00 3.20 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.09 2.39 6.51 -51.93 -0.34 2.06 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.80 6.33 -40.82 -0.26 3.55 16 38 H 0.13 0.89 6.27 -52.49 -0.33 0.56 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.19 0.10 8.06 -52.49 -0.42 -0.32 16 41 H 0.14 1.26 7.58 -52.48 -0.40 0.87 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -35.68 361.71 -11.20 -46.88 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.72 Total: 1.26 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -5.33 Total: -6.35 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.35 Total: -55.30 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.68 -11.20 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978647144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.868 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds