Wall clock time and date at job start Tue Mar 31 2020 14:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48509 * 109.46944 * 270.00344 * 3 2 1 5 5 H 1.48493 * 109.47235 * 30.00044 * 3 2 1 6 6 H 1.48498 * 109.47105 * 150.00271 * 3 2 1 7 7 C 1.38814 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99750 * 189.09477 * 7 2 1 9 9 N 1.36935 * 120.00030 * 9.10021 * 7 2 1 10 10 C 1.48151 * 127.83901 * 15.56457 * 9 7 2 11 11 C 1.54389 * 104.61473 * 140.42261 * 10 9 7 12 12 H 1.09001 * 117.61415 * 242.76979 * 11 10 9 13 13 C 1.52994 * 118.12598 * 87.19269 * 11 10 9 14 14 H 1.09003 * 117.43916 * 14.46141 * 13 11 10 15 15 C 1.52997 * 117.44638 * 159.21444 * 13 11 10 16 16 N 1.46497 * 109.47213 * 184.99972 * 15 13 11 17 17 C 1.34785 * 119.99921 * 179.97438 * 16 15 13 18 18 O 1.21598 * 119.99546 * 359.97438 * 17 16 15 19 19 C 1.47512 * 119.99650 * 180.27511 * 17 16 15 20 20 C 1.41032 * 119.39776 * 359.72644 * 19 17 16 21 21 C 1.35189 * 121.65880 * 179.97438 * 20 19 17 22 22 C 1.41381 * 119.92916 * 359.97438 * 21 20 19 23 23 N 1.31923 * 134.39629 * 180.02562 * 22 21 20 24 24 N 1.39922 * 109.06486 * 179.97438 * 23 22 21 25 25 H 0.97004 * 124.98572 * 180.02562 * 24 23 22 26 26 C 1.33823 * 110.02514 * 359.97438 * 24 23 22 27 27 C 1.38534 * 107.83507 * 0.02562 * 26 24 23 28 28 C 1.38222 * 119.38946 * 179.44879 * 19 17 16 29 29 C 1.53004 * 60.55775 * 266.85879 * 13 11 10 30 30 H 1.08997 * 119.54085 * 248.22910 * 29 13 11 31 31 C 1.48150 * 127.83615 * 195.57492 * 9 7 2 32 32 H 0.97001 * 120.00054 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.40561 * 21.64194 * 10 9 7 34 34 H 1.08996 * 110.40847 * 259.20435 * 10 9 7 35 35 H 1.08994 * 109.47322 * 64.99590 * 15 13 11 36 36 H 1.09004 * 109.46732 * 305.00194 * 15 13 11 37 37 H 0.96993 * 120.00345 * 359.97438 * 16 15 13 38 38 H 1.07999 * 119.17242 * 359.97374 * 20 19 17 39 39 H 1.07998 * 120.03607 * 179.97438 * 21 20 19 40 40 H 1.08002 * 126.07809 * 180.02562 * 26 24 23 41 41 H 1.08003 * 120.32715 * 0.02562 * 28 19 17 42 42 H 1.08994 * 110.40311 * 338.36165 * 31 9 7 43 43 H 1.09002 * 110.40434 * 100.67905 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3386 -2.3805 -0.1886 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0637 -3.8160 -1.6193 12 1 -0.1485 -3.6861 -2.6806 13 6 -0.1184 -5.1924 -0.9766 14 1 -0.5428 -5.2259 0.0269 15 6 -0.5042 -6.3539 -1.8946 16 7 -0.7482 -7.5529 -1.0890 17 6 -1.1044 -8.7065 -1.6882 18 8 -1.2236 -8.7518 -2.8975 19 6 -1.3560 -9.9121 -0.8764 20 6 -1.2144 -9.8450 0.5252 21 6 -1.4340 -10.9214 1.3130 22 6 -1.8164 -12.1532 0.7337 23 7 -2.0963 -13.3505 1.2117 24 7 -2.4196 -14.2024 0.1499 25 1 -2.6634 -15.1369 0.2409 26 6 -2.3441 -13.5385 -1.0096 27 6 -1.9682 -12.2351 -0.7285 28 6 -1.7317 -11.0855 -1.5029 29 6 1.2896 -4.6127 -1.1266 30 1 1.9905 -5.0765 -1.8207 31 6 1.8197 -3.7546 0.0856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3433 -1.7011 -1.2926 34 1 -0.7317 -2.7500 0.1058 35 1 0.3067 -6.5468 -2.5968 36 1 -1.4086 -6.0963 -2.4459 37 1 -0.6534 -7.5166 -0.1244 38 1 -0.9233 -8.9100 0.9807 39 1 -1.3176 -10.8406 2.3836 40 1 -2.5412 -13.9464 -1.9900 41 1 -1.8398 -11.1198 -2.5770 42 1 2.9091 -3.7785 0.1073 43 1 1.4133 -4.1183 1.0294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978647144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:21 Heat of formation + Delta-G solvation = 97.904859 kcal Electronic energy + Delta-G solvation = -25596.011138 eV Core-core repulsion = 21836.600548 eV Total energy + Delta-G solvation = -3759.410590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30501 -40.91762 -40.09295 -37.71810 -36.32555 -34.97566 -33.20618 -32.75707 -31.76199 -30.20877 -28.87082 -28.56987 -26.80174 -25.11210 -23.80824 -22.76158 -21.83881 -21.68115 -21.07722 -20.80005 -19.18041 -18.82812 -18.62172 -17.65267 -17.07913 -16.74445 -16.32072 -16.07388 -15.86447 -15.45903 -15.32166 -15.01259 -14.93083 -14.63405 -14.48832 -14.17878 -13.99047 -13.93443 -13.32612 -13.15617 -12.87497 -12.74524 -12.69466 -12.52490 -12.25670 -11.93659 -11.85586 -11.73584 -11.41624 -11.38641 -11.12873 -10.88992 -10.67726 -10.51657 -10.05171 -9.83891 -8.88726 -8.69381 -7.90200 -5.26263 -0.47970 0.39283 1.36345 1.47238 1.49272 1.57924 1.79976 1.97056 2.15729 2.48980 2.79508 2.92798 3.22249 3.28033 3.64030 3.67115 3.74371 3.84559 3.91763 4.11108 4.19565 4.25723 4.30904 4.34689 4.40329 4.45850 4.55894 4.61388 4.71961 4.79650 4.96092 5.04985 5.09150 5.24762 5.33683 5.36427 5.37809 5.42090 5.46928 5.51135 5.56057 5.69416 5.73804 6.20039 6.20969 6.51888 6.60313 7.02964 7.26323 7.70350 8.48833 9.23484 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.035536 B = 0.001865 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.745064 B =15011.312741 C =15434.471493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.178 4.178 12 H 0.111 0.889 13 C -0.113 4.113 14 H 0.110 0.890 15 C 0.164 3.836 16 N -0.712 5.712 17 C 0.563 3.437 18 O -0.587 6.587 19 C -0.200 4.200 20 C -0.047 4.047 21 C -0.124 4.124 22 C 0.101 3.899 23 N -0.349 5.349 24 N -0.410 5.410 25 H 0.463 0.537 26 C 0.142 3.858 27 C -0.254 4.254 28 C 0.046 3.954 29 C -0.158 4.158 30 H 0.129 0.871 31 C 0.149 3.851 32 H 0.249 0.751 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.413 0.587 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.245 0.755 41 H 0.144 0.856 42 H 0.054 0.946 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -31.199 -1.788 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.198 4.198 12 H 0.129 0.871 13 C -0.132 4.132 14 H 0.128 0.872 15 C 0.040 3.960 16 N -0.364 5.364 17 C 0.353 3.647 18 O -0.469 6.469 19 C -0.205 4.205 20 C -0.070 4.070 21 C -0.145 4.145 22 C -0.053 4.053 23 N -0.177 5.177 24 N -0.110 5.110 25 H 0.311 0.689 26 C -0.018 4.018 27 C -0.264 4.264 28 C 0.025 3.975 29 C -0.177 4.177 30 H 0.147 0.853 31 C 0.024 3.976 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.251 0.749 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.261 0.739 41 H 0.162 0.838 42 H 0.073 0.927 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.595 -31.683 -1.441 32.205 hybrid contribution 0.197 1.386 -0.135 1.407 sum -5.399 -30.297 -1.576 30.814 Atomic orbital electron populations 1.70095 1.06488 1.25686 1.57239 1.25739 0.96514 1.01276 1.02221 0.85065 0.77781 0.78912 0.77488 1.21323 1.22064 1.19145 1.19383 0.91335 0.83691 1.42424 0.90175 1.45466 1.13893 1.01245 1.73888 1.20815 0.86008 0.93688 0.93150 1.23864 1.04812 0.91271 0.99895 0.87107 1.22440 0.98279 0.92224 1.00267 0.87219 1.20679 1.00937 0.82050 0.92307 1.45810 1.69620 1.09280 1.11701 1.18431 0.75735 0.83567 0.87016 1.90743 1.54611 1.85784 1.15777 1.19385 1.13098 0.93950 0.94076 1.20812 0.95572 0.99116 0.91473 1.19935 1.04809 0.89021 1.00715 1.21383 0.97149 0.93510 0.93288 1.77617 1.29248 1.01475 1.09336 1.46433 1.47035 1.13740 1.03764 0.68859 1.23681 0.93867 0.90565 0.93726 1.19827 1.17100 0.95840 0.93585 1.20797 0.87931 0.88970 0.99840 1.24646 0.90361 1.01732 1.01011 0.85318 1.21883 0.97607 0.84136 0.94019 0.94158 0.93027 0.97919 0.91319 0.91345 0.74889 0.83311 0.83793 0.73874 0.83798 0.92739 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.20 10.86 21.65 0.24 -56.97 16 2 C -0.06 -3.64 5.40 84.86 0.46 -3.19 16 3 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 8 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 9 N -0.62 -32.05 3.38 -681.41 -2.30 -34.35 16 10 C 0.19 9.26 5.70 86.53 0.49 9.76 16 11 C -0.18 -6.57 6.77 -9.89 -0.07 -6.64 16 12 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 13 C -0.11 -3.21 5.34 -10.80 -0.06 -3.27 16 14 H 0.11 3.04 8.04 -2.39 -0.02 3.02 16 15 C 0.16 4.12 5.95 86.38 0.51 4.64 16 16 N -0.71 -15.59 5.50 -466.29 -2.57 -18.16 16 17 C 0.56 14.04 7.75 86.69 0.67 14.71 16 18 O -0.59 -18.70 16.26 -4.03 -0.07 -18.76 16 19 C -0.20 -4.10 5.86 -20.15 -0.12 -4.22 16 20 C -0.05 -0.80 9.39 22.25 0.21 -0.59 16 21 C -0.12 -2.19 10.05 22.34 0.22 -1.96 16 22 C 0.10 1.94 7.49 42.27 0.32 2.26 16 23 N -0.35 -6.29 12.69 -48.54 -0.62 -6.91 16 24 N -0.41 -3.27 7.17 -56.25 -0.40 -3.67 16 25 H 0.46 -0.11 8.96 -213.43 -1.91 -2.03 16 26 C 0.14 0.91 12.09 84.46 1.02 1.93 16 27 C -0.25 -3.93 6.32 -20.26 -0.13 -4.06 16 28 C 0.05 0.84 9.64 22.85 0.22 1.06 16 29 C -0.16 -5.18 7.03 -8.69 -0.06 -5.24 16 30 H 0.13 3.73 8.12 -2.39 -0.02 3.72 16 31 C 0.15 6.00 7.10 87.72 0.62 6.63 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.05 2.89 6.51 -2.39 -0.02 2.88 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.07 1.79 7.94 -2.39 -0.02 1.77 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 6.97 6.33 -92.71 -0.59 6.38 16 38 H 0.15 1.79 6.27 -2.91 -0.02 1.77 16 39 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.25 -1.12 8.06 -2.91 -0.02 -1.14 16 41 H 0.14 2.40 7.58 -2.91 -0.02 2.37 16 42 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -80.44 361.71 0.07 -80.37 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -1.43 Total: 11.49 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.19 Total: -0.79 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.65 Total: -120.05 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.07 Total: -18.76 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -80.44 0.07 -80.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978647144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.277 kcal (2) G-P(sol) polarization free energy of solvation -80.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds