Wall clock time and date at job start Tue Mar 31 2020 14:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47096 * 274.45777 * 3 2 1 5 5 H 1.48497 * 109.46899 * 34.45480 * 3 2 1 6 6 H 1.48500 * 109.47028 * 154.45636 * 3 2 1 7 7 C 1.38804 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99611 * 189.02032 * 7 2 1 9 9 N 1.36933 * 120.00329 * 9.01705 * 7 2 1 10 10 C 1.48146 * 127.83829 * 15.59379 * 9 7 2 11 11 C 1.57689 * 104.67379 * 139.77179 * 10 9 7 12 12 H 1.09000 * 120.32650 * 244.63566 * 11 10 9 13 13 C 1.53001 * 116.11096 * 87.31116 * 11 10 9 14 14 H 1.09000 * 117.40623 * 16.94839 * 13 11 10 15 15 C 1.52996 * 117.44440 * 161.63403 * 13 11 10 16 16 N 1.46501 * 109.47495 * 244.23690 * 15 13 11 17 17 C 1.34780 * 119.99896 * 179.72230 * 16 15 13 18 18 O 1.21781 * 119.99950 * 0.28136 * 17 16 15 19 19 C 1.41699 * 119.99350 * 180.27768 * 17 16 15 20 20 C 1.39189 * 125.87170 * 180.02562 * 19 17 16 21 21 C 1.38084 * 107.67993 * 179.97438 * 20 19 17 22 22 C 1.39501 * 107.56700 * 359.97438 * 21 20 19 23 23 C 1.40617 * 132.41340 * 180.02562 * 22 21 20 24 24 C 1.36298 * 119.16022 * 179.26248 * 23 22 21 25 25 C 1.39960 * 120.03770 * 0.60167 * 24 23 22 26 26 N 1.30646 * 120.99537 * 359.62761 * 25 24 23 27 27 N 1.37160 * 108.20534 * 359.76164 * 22 21 20 28 28 C 1.52994 * 60.55742 * 269.28479 * 13 11 10 29 29 H 1.08996 * 119.54350 * 248.23066 * 28 13 11 30 30 C 1.48149 * 127.83827 * 195.59444 * 9 7 2 31 31 H 0.97002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.40653 * 259.20068 * 10 9 7 33 33 H 1.09006 * 110.40219 * 21.51317 * 10 9 7 34 34 H 1.09002 * 109.47185 * 124.24007 * 15 13 11 35 35 H 1.08995 * 109.47336 * 4.24440 * 15 13 11 36 36 H 0.97003 * 119.99676 * 0.02562 * 16 15 13 37 37 H 1.08005 * 126.15593 * 0.02562 * 20 19 17 38 38 H 1.07992 * 126.21458 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.41798 * 359.97438 * 23 22 21 40 40 H 1.08009 * 119.98081 * 180.18896 * 24 23 22 41 41 H 1.08008 * 119.50582 * 179.61320 * 25 24 23 42 42 H 1.08997 * 110.41023 * 100.80087 * 30 9 7 43 43 H 1.08999 * 110.40719 * 338.36646 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4034 2.1009 -1.3958 5 1 1.4978 2.6236 0.7921 6 1 3.5917 1.4149 0.6037 7 6 2.0102 -1.2021 0.0005 8 1 3.0802 -1.2077 0.1472 9 7 1.3383 -2.3807 -0.1848 10 6 -0.0349 -2.5716 -0.7070 11 6 0.0665 -3.8352 -1.6449 12 1 -0.1102 -3.7409 -2.7164 13 6 -0.1193 -5.1940 -0.9666 14 1 -0.5792 -5.2027 0.0216 15 6 -0.4569 -6.3884 -1.8612 16 7 -1.7910 -6.8904 -1.5228 17 6 -2.3042 -7.9429 -2.1901 18 8 -1.6569 -8.4797 -3.0709 19 6 -3.5970 -8.4246 -1.8668 20 6 -4.2429 -9.4979 -2.4737 21 6 -5.4770 -9.6400 -1.8708 22 6 -5.5842 -8.6510 -0.8928 23 6 -6.6048 -8.3241 0.0175 24 6 -6.4155 -7.2892 0.8841 25 6 -5.2221 -6.5586 0.8526 26 7 -4.2732 -6.8561 0.0054 27 7 -4.4252 -7.9175 -0.8962 28 6 1.2850 -4.5986 -1.0855 29 1 2.0161 -5.0728 -1.7402 30 6 1.8196 -3.7544 0.0914 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7316 -2.7497 0.1121 33 1 -0.3452 -1.7023 -1.2868 34 1 0.2784 -7.1779 -1.7060 35 1 -0.4401 -6.0765 -2.9054 36 1 -2.3067 -6.4625 -0.8214 37 1 -3.8492 -10.1098 -3.2719 38 1 -6.2235 -10.3820 -2.1125 39 1 -7.5226 -8.8931 0.0376 40 1 -7.1894 -7.0286 1.5909 41 1 -5.0837 -5.7362 1.5390 42 1 1.4125 -4.1172 1.0352 43 1 2.9092 -3.7783 0.1122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978828903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:32 Heat of formation + Delta-G solvation = 138.371927 kcal Electronic energy + Delta-G solvation = -26422.239195 eV Core-core repulsion = 22664.583389 eV Total energy + Delta-G solvation = -3757.655806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.31287 -39.57456 -38.58607 -37.46334 -34.91842 -33.83122 -33.17086 -30.89207 -30.78013 -29.44859 -27.19366 -26.95763 -25.32310 -24.55097 -23.37019 -21.58635 -20.97262 -20.71574 -19.98434 -19.24959 -18.49236 -17.55075 -16.80249 -16.37480 -16.18388 -16.02464 -15.74872 -14.97008 -14.79790 -14.44888 -14.01469 -13.98338 -13.62320 -13.43745 -13.07810 -12.99410 -12.75460 -12.64698 -12.59862 -12.29875 -11.79925 -11.24403 -11.18259 -11.06593 -10.96154 -10.84142 -10.64245 -10.23865 -10.13992 -10.09475 -9.74492 -9.37092 -9.24454 -9.07336 -8.87648 -8.63943 -8.09831 -6.86581 -5.80093 -3.14329 0.04975 0.63493 1.55341 1.99914 2.86126 3.28237 3.36859 3.37983 3.43388 3.45179 3.80202 4.10200 4.21753 4.24108 4.45864 4.49274 4.81972 4.92868 4.98553 5.03743 5.26027 5.37987 5.38473 5.41620 5.45555 5.56610 5.58119 5.70623 5.81132 5.82864 5.96279 5.97440 6.00080 6.16006 6.25107 6.40844 6.47024 6.59684 6.69565 6.76666 6.93958 7.19790 7.35550 7.53545 7.62800 7.71917 8.21034 8.23647 9.11038 9.73642 10.51354 11.34117 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002577 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.311638 B =10862.460190 C =12045.230260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.187 3.813 11 C -0.170 4.170 12 H 0.105 0.895 13 C -0.152 4.152 14 H 0.101 0.899 15 C 0.154 3.846 16 N -0.718 5.718 17 C 0.584 3.416 18 O -0.543 6.543 19 C -0.024 4.024 20 C -0.080 4.080 21 C -0.173 4.173 22 C 0.003 3.997 23 C -0.011 4.011 24 C -0.199 4.199 25 C 0.144 3.856 26 N -0.279 5.279 27 N -0.235 5.235 28 C -0.165 4.165 29 H 0.103 0.897 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.201 0.799 42 H 0.024 0.976 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 -18.768 0.984 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.061 3.939 11 C -0.190 4.190 12 H 0.123 0.877 13 C -0.171 4.171 14 H 0.119 0.881 15 C 0.031 3.969 16 N -0.371 5.371 17 C 0.372 3.628 18 O -0.421 6.421 19 C -0.141 4.141 20 C -0.105 4.105 21 C -0.199 4.199 22 C -0.109 4.109 23 C -0.037 4.037 24 C -0.222 4.222 25 C -0.047 4.047 26 N -0.088 5.088 27 N 0.001 4.999 28 C -0.186 4.186 29 H 0.121 0.879 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.217 0.783 42 H 0.042 0.958 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.579 -18.245 0.302 23.356 hybrid contribution -0.709 0.802 0.581 1.218 sum -15.289 -17.443 0.883 23.212 Atomic orbital electron populations 1.69901 1.05056 1.25341 1.55967 1.24897 0.95660 0.97977 1.01822 0.86084 0.78725 0.83282 0.77569 1.21531 1.21689 1.20488 1.19025 0.90831 0.82347 1.43150 0.90535 1.45154 1.13436 1.00020 1.73148 1.21642 0.86650 0.92586 0.93041 1.25087 1.01951 0.92483 0.99439 0.87671 1.22526 1.00799 0.93678 1.00142 0.88066 1.20883 0.82825 0.94770 0.98462 1.46187 1.19225 1.32316 1.39367 1.15726 0.84224 0.80590 0.82241 1.90860 1.60564 1.58911 1.31803 1.19587 0.94649 1.02601 0.97236 1.21350 0.93617 0.95545 0.99984 1.21063 0.99283 1.00900 0.98607 1.19449 0.89488 0.98692 1.03277 1.20961 0.97216 0.95082 0.90482 1.21481 0.99487 0.98350 1.02872 1.24122 0.89555 0.97682 0.93376 1.75523 1.26705 1.03003 1.03575 1.45828 1.12647 1.19082 1.22293 1.23788 0.89658 1.02319 1.02791 0.87902 1.21161 0.97147 0.85927 0.92975 0.93616 0.95681 0.89412 0.91201 0.91303 0.75196 0.81616 0.82528 0.82645 0.82989 0.78265 0.95793 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.86 55.49 0.60 -26.22 16 2 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.42 3.38 -166.73 -0.56 -15.98 16 10 C 0.19 4.54 5.76 -0.57 0.00 4.54 16 11 C -0.17 -3.33 7.03 -87.38 -0.61 -3.95 16 12 H 0.11 1.98 8.12 -51.93 -0.42 1.56 16 13 C -0.15 -2.56 5.34 -90.62 -0.48 -3.04 16 14 H 0.10 1.72 8.04 -51.93 -0.42 1.31 16 15 C 0.15 2.40 5.95 -4.04 -0.02 2.38 16 16 N -0.72 -11.01 5.55 -63.20 -0.35 -11.36 16 17 C 0.58 9.35 7.60 -14.94 -0.11 9.24 16 18 O -0.54 -9.96 16.79 5.12 0.09 -9.87 16 19 C -0.02 -0.33 6.84 -83.74 -0.57 -0.90 16 20 C -0.08 -0.89 10.49 -39.28 -0.41 -1.30 16 21 C -0.17 -1.52 10.92 -39.17 -0.43 -1.95 16 22 C 0.00 0.03 6.80 -84.11 -0.57 -0.54 16 23 C -0.01 -0.07 10.11 -39.38 -0.40 -0.46 16 24 C -0.20 -1.07 10.04 -39.64 -0.40 -1.46 16 25 C 0.14 1.05 11.29 -17.41 -0.20 0.86 16 26 N -0.28 -3.15 9.68 30.61 0.30 -2.86 16 27 N -0.23 -2.88 4.01 -8.28 -0.03 -2.91 16 28 C -0.17 -3.05 6.77 -89.22 -0.60 -3.66 16 29 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 30 C 0.15 3.30 7.04 -2.40 -0.02 3.28 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 36 H 0.41 6.01 6.00 -40.82 -0.24 5.77 16 37 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.16 0.42 8.06 -52.48 -0.42 -0.01 16 40 H 0.15 0.31 8.06 -52.48 -0.42 -0.11 16 41 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -34.99 362.63 -10.22 -45.21 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.61 Total: 5.29 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -5.09 Total: -3.75 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.05 Total: -59.33 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.99 -10.22 -45.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978828903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.581 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds