Wall clock time and date at job start Tue Mar 31 2020 14:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47096 * 274.45777 * 3 2 1 5 5 H 1.48497 * 109.46899 * 34.45480 * 3 2 1 6 6 H 1.48500 * 109.47028 * 154.45636 * 3 2 1 7 7 C 1.38804 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99611 * 189.02032 * 7 2 1 9 9 N 1.36933 * 120.00329 * 9.01705 * 7 2 1 10 10 C 1.48146 * 127.83829 * 15.59379 * 9 7 2 11 11 C 1.57689 * 104.67379 * 139.77179 * 10 9 7 12 12 H 1.09000 * 120.32650 * 244.63566 * 11 10 9 13 13 C 1.53001 * 116.11096 * 87.31116 * 11 10 9 14 14 H 1.09000 * 117.40623 * 16.94839 * 13 11 10 15 15 C 1.52996 * 117.44440 * 161.63403 * 13 11 10 16 16 N 1.46501 * 109.47495 * 244.23690 * 15 13 11 17 17 C 1.34780 * 119.99896 * 179.72230 * 16 15 13 18 18 O 1.21781 * 119.99950 * 0.28136 * 17 16 15 19 19 C 1.41699 * 119.99350 * 180.27768 * 17 16 15 20 20 C 1.39189 * 125.87170 * 180.02562 * 19 17 16 21 21 C 1.38084 * 107.67993 * 179.97438 * 20 19 17 22 22 C 1.39501 * 107.56700 * 359.97438 * 21 20 19 23 23 C 1.40617 * 132.41340 * 180.02562 * 22 21 20 24 24 C 1.36298 * 119.16022 * 179.26248 * 23 22 21 25 25 C 1.39960 * 120.03770 * 0.60167 * 24 23 22 26 26 N 1.30646 * 120.99537 * 359.62761 * 25 24 23 27 27 N 1.37160 * 108.20534 * 359.76164 * 22 21 20 28 28 C 1.52994 * 60.55742 * 269.28479 * 13 11 10 29 29 H 1.08996 * 119.54350 * 248.23066 * 28 13 11 30 30 C 1.48149 * 127.83827 * 195.59444 * 9 7 2 31 31 H 0.97002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.40653 * 259.20068 * 10 9 7 33 33 H 1.09006 * 110.40219 * 21.51317 * 10 9 7 34 34 H 1.09002 * 109.47185 * 124.24007 * 15 13 11 35 35 H 1.08995 * 109.47336 * 4.24440 * 15 13 11 36 36 H 0.97003 * 119.99676 * 0.02562 * 16 15 13 37 37 H 1.08005 * 126.15593 * 0.02562 * 20 19 17 38 38 H 1.07992 * 126.21458 * 179.97438 * 21 20 19 39 39 H 1.08004 * 120.41798 * 359.97438 * 23 22 21 40 40 H 1.08009 * 119.98081 * 180.18896 * 24 23 22 41 41 H 1.08008 * 119.50582 * 179.61320 * 25 24 23 42 42 H 1.08997 * 110.41023 * 100.80087 * 30 9 7 43 43 H 1.08999 * 110.40719 * 338.36646 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4034 2.1009 -1.3958 5 1 1.4978 2.6236 0.7921 6 1 3.5917 1.4149 0.6037 7 6 2.0102 -1.2021 0.0005 8 1 3.0802 -1.2077 0.1472 9 7 1.3383 -2.3807 -0.1848 10 6 -0.0349 -2.5716 -0.7070 11 6 0.0665 -3.8352 -1.6449 12 1 -0.1102 -3.7409 -2.7164 13 6 -0.1193 -5.1940 -0.9666 14 1 -0.5792 -5.2027 0.0216 15 6 -0.4569 -6.3884 -1.8612 16 7 -1.7910 -6.8904 -1.5228 17 6 -2.3042 -7.9429 -2.1901 18 8 -1.6569 -8.4797 -3.0709 19 6 -3.5970 -8.4246 -1.8668 20 6 -4.2429 -9.4979 -2.4737 21 6 -5.4770 -9.6400 -1.8708 22 6 -5.5842 -8.6510 -0.8928 23 6 -6.6048 -8.3241 0.0175 24 6 -6.4155 -7.2892 0.8841 25 6 -5.2221 -6.5586 0.8526 26 7 -4.2732 -6.8561 0.0054 27 7 -4.4252 -7.9175 -0.8962 28 6 1.2850 -4.5986 -1.0855 29 1 2.0161 -5.0728 -1.7402 30 6 1.8196 -3.7544 0.0914 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7316 -2.7497 0.1121 33 1 -0.3452 -1.7023 -1.2868 34 1 0.2784 -7.1779 -1.7060 35 1 -0.4401 -6.0765 -2.9054 36 1 -2.3067 -6.4625 -0.8214 37 1 -3.8492 -10.1098 -3.2719 38 1 -6.2235 -10.3820 -2.1125 39 1 -7.5226 -8.8931 0.0376 40 1 -7.1894 -7.0286 1.5909 41 1 -5.0837 -5.7362 1.5390 42 1 1.4125 -4.1172 1.0352 43 1 2.9092 -3.7783 0.1122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978828903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:31 Heat of formation + Delta-G solvation = 115.985315 kcal Electronic energy + Delta-G solvation = -26423.209951 eV Core-core repulsion = 22664.583389 eV Total energy + Delta-G solvation = -3758.626563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.04513 -40.82162 -40.08544 -38.17525 -36.38551 -35.12841 -34.25852 -32.75099 -31.48611 -30.39859 -28.79618 -28.59849 -26.80906 -25.49246 -24.21341 -22.93051 -22.18977 -21.90705 -21.24551 -20.87927 -19.51547 -18.84080 -18.18657 -17.26959 -17.05599 -16.92929 -16.76076 -16.60497 -16.02723 -15.95155 -15.30717 -15.23438 -14.66654 -14.56819 -14.51625 -14.27618 -14.07848 -13.75395 -13.41747 -13.20192 -13.15421 -13.06373 -12.90269 -12.75603 -12.34071 -11.95702 -11.94727 -11.78634 -11.74821 -11.58410 -11.39351 -10.97356 -10.71333 -10.65469 -10.19374 -9.96637 -8.93288 -8.82619 -7.93166 -5.30058 -0.49957 -0.10891 0.85273 1.22429 1.45361 1.47459 1.56530 2.11020 2.23563 2.37612 2.46752 2.73090 3.16423 3.24221 3.55770 3.58819 3.66740 3.77921 3.81881 3.95419 3.98072 4.15027 4.19770 4.35303 4.36127 4.42762 4.46944 4.60834 4.64198 4.75216 4.78149 4.88819 4.97939 5.00099 5.11840 5.13820 5.22187 5.30796 5.38100 5.41607 5.47927 5.61379 5.62622 5.69783 6.15527 6.39334 6.60157 6.99092 7.07500 7.65774 8.44767 9.20464 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002577 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.311638 B =10862.460190 C =12045.230260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.179 4.179 12 H 0.114 0.886 13 C -0.118 4.118 14 H 0.101 0.899 15 C 0.161 3.839 16 N -0.719 5.719 17 C 0.582 3.418 18 O -0.580 6.580 19 C -0.080 4.080 20 C -0.084 4.084 21 C -0.171 4.171 22 C 0.002 3.998 23 C -0.016 4.016 24 C -0.183 4.183 25 C 0.144 3.856 26 N -0.328 5.328 27 N -0.246 5.246 28 C -0.154 4.154 29 H 0.128 0.872 30 C 0.149 3.851 31 H 0.250 0.750 32 H 0.006 0.994 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.170 0.830 38 H 0.193 0.807 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.229 0.771 42 H 0.026 0.974 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.878 -19.942 2.019 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.343 5.343 10 C 0.067 3.933 11 C -0.198 4.198 12 H 0.132 0.868 13 C -0.137 4.137 14 H 0.119 0.881 15 C 0.038 3.962 16 N -0.372 5.372 17 C 0.373 3.627 18 O -0.462 6.462 19 C -0.195 4.195 20 C -0.109 4.109 21 C -0.195 4.195 22 C -0.111 4.111 23 C -0.042 4.042 24 C -0.206 4.206 25 C -0.046 4.046 26 N -0.138 5.138 27 N -0.009 5.009 28 C -0.174 4.174 29 H 0.145 0.855 30 C 0.024 3.976 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.252 0.748 37 H 0.188 0.812 38 H 0.210 0.790 39 H 0.215 0.785 40 H 0.212 0.788 41 H 0.245 0.755 42 H 0.044 0.956 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.274 -19.439 1.351 25.388 hybrid contribution -0.360 1.164 0.429 1.291 sum -16.634 -18.275 1.780 24.776 Atomic orbital electron populations 1.70093 1.06502 1.25738 1.57112 1.25756 0.96551 1.01308 1.02021 0.85025 0.77905 0.78829 0.77331 1.21422 1.21870 1.19060 1.19409 0.91374 0.83568 1.42678 0.90085 1.45447 1.13896 1.01191 1.73737 1.21373 0.85947 0.93335 0.92691 1.24790 1.04143 0.91728 0.99181 0.86773 1.22380 0.99239 0.92303 0.99804 0.88098 1.20756 0.83503 0.94201 0.97767 1.46172 1.19040 1.32457 1.39564 1.16050 0.84986 0.80090 0.81534 1.90809 1.61851 1.60095 1.33432 1.19403 0.94832 1.05072 1.00207 1.21583 0.94511 0.94870 0.99982 1.21473 0.98937 1.01322 0.97808 1.20198 0.89411 0.98012 1.03511 1.21529 0.97635 0.95662 0.89383 1.22001 0.99194 0.96826 1.02569 1.24877 0.89588 0.97944 0.92158 1.75502 1.29105 1.04063 1.05176 1.45873 1.13125 1.19617 1.22250 1.23751 0.90311 1.01773 1.01569 0.85451 1.21306 0.97860 0.84292 0.94118 0.94090 0.97608 0.92987 0.90436 0.91702 0.74847 0.81228 0.78976 0.78521 0.78778 0.75480 0.95611 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.13 10.86 21.65 0.24 -56.90 16 2 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 3 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.75 10.35 84.03 0.87 -12.88 16 8 H 0.08 4.41 7.84 -2.91 -0.02 4.38 16 9 N -0.62 -32.66 3.38 -681.41 -2.30 -34.97 16 10 C 0.19 9.70 5.76 87.72 0.51 10.21 16 11 C -0.18 -7.06 7.03 -8.70 -0.06 -7.12 16 12 H 0.11 4.32 8.12 -2.39 -0.02 4.30 16 13 C -0.12 -3.92 5.34 -10.80 -0.06 -3.98 16 14 H 0.10 3.41 8.04 -2.39 -0.02 3.39 16 15 C 0.16 5.00 5.95 86.38 0.51 5.52 16 16 N -0.72 -22.61 5.55 -472.04 -2.62 -25.23 16 17 C 0.58 19.45 7.60 85.10 0.65 20.09 16 18 O -0.58 -22.23 16.79 -4.61 -0.08 -22.30 16 19 C -0.08 -2.27 6.84 39.37 0.27 -2.00 16 20 C -0.08 -1.88 10.49 22.46 0.24 -1.65 16 21 C -0.17 -2.71 10.92 22.54 0.25 -2.46 16 22 C 0.00 0.04 6.80 39.20 0.27 0.30 16 23 C -0.02 -0.13 10.11 22.40 0.23 0.09 16 24 C -0.18 -1.21 10.04 22.23 0.22 -0.99 16 25 C 0.14 1.78 11.29 85.29 0.96 2.74 16 26 N -0.33 -7.26 9.68 -57.06 -0.55 -7.81 16 27 N -0.25 -5.95 4.01 -180.12 -0.72 -6.67 16 28 C -0.15 -5.54 6.77 -9.89 -0.07 -5.60 16 29 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 30 C 0.15 6.34 7.04 86.54 0.61 6.95 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 2.97 6.51 -2.38 -0.02 2.95 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 36 H 0.41 12.45 6.00 -92.71 -0.56 11.89 16 37 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 38 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.20 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.20 -0.36 8.06 -2.91 -0.02 -0.38 16 41 H 0.23 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -80.32 362.63 2.32 -78.00 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.48 Total: 21.96 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.85 Total: 6.11 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -5.96 Total: -131.58 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.08 Total: -22.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -80.32 2.32 -78.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978828903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.986 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds