Wall clock time and date at job start Tue Mar 31 2020 15:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48503 * 109.46929 * 270.00376 * 3 2 1 5 5 H 1.48504 * 109.46954 * 30.00170 * 3 2 1 6 6 H 1.48496 * 109.46958 * 150.00242 * 3 2 1 7 7 C 1.38811 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99933 * 170.56976 * 7 2 1 9 9 N 1.36936 * 119.99969 * 350.57353 * 7 2 1 10 10 C 1.48151 * 127.83932 * 164.33413 * 9 7 2 11 11 C 1.57696 * 104.67323 * 139.77182 * 10 9 7 12 12 H 1.08999 * 120.32121 * 244.64513 * 11 10 9 13 13 C 1.52997 * 116.11055 * 87.30875 * 11 10 9 14 14 H 1.08999 * 117.40649 * 16.95603 * 13 11 10 15 15 C 1.53008 * 117.44169 * 161.63709 * 13 11 10 16 16 N 1.46497 * 109.46812 * 244.24178 * 15 13 11 17 17 C 1.34778 * 119.99680 * 179.72392 * 16 15 13 18 18 O 1.21618 * 119.99951 * 0.27441 * 17 16 15 19 19 C 1.47388 * 119.99926 * 180.27409 * 17 16 15 20 20 N 1.31572 * 126.82697 * 0.02854 * 19 17 16 21 21 N 1.28382 * 111.96663 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.36844 * 179.97438 * 21 20 19 23 23 C 1.37045 * 111.25762 * 359.97438 * 21 20 19 24 24 C 1.39121 * 134.72412 * 179.97438 * 23 21 20 25 25 C 1.36693 * 119.78189 * 179.27169 * 24 23 21 26 26 C 1.38896 * 120.89154 * 0.62371 * 25 24 23 27 27 C 1.36719 * 120.52619 * 359.60475 * 26 25 24 28 28 C 1.39196 * 119.50672 * 0.02562 * 27 26 25 29 29 C 1.52996 * 60.55832 * 269.28657 * 13 11 10 30 30 H 1.08999 * 119.54431 * 248.23643 * 29 13 11 31 31 C 1.48150 * 127.84054 * 344.32976 * 9 7 2 32 32 H 0.97008 * 119.99568 * 359.97438 * 1 2 3 33 33 H 1.08989 * 110.40947 * 259.19704 * 10 9 7 34 34 H 1.09002 * 110.40517 * 21.51224 * 10 9 7 35 35 H 1.08995 * 109.47190 * 124.24040 * 15 13 11 36 36 H 1.08999 * 109.46748 * 4.24205 * 15 13 11 37 37 H 0.96999 * 120.00404 * 0.02562 * 16 15 13 38 38 H 1.08000 * 120.11086 * 359.97438 * 24 23 21 39 39 H 1.08001 * 119.55522 * 180.22833 * 25 24 23 40 40 H 1.08006 * 119.73612 * 179.63494 * 26 25 24 41 41 H 1.07997 * 120.24693 * 180.02562 * 27 26 25 42 42 H 1.09001 * 110.40790 * 100.80061 * 31 9 7 43 43 H 1.08996 * 110.40348 * 338.37848 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0792 -1.2086 -0.1527 9 7 1.3393 -2.3799 0.1953 10 6 1.8183 -3.7548 -0.0791 11 6 1.2958 -4.6102 1.1383 12 1 2.0010 -5.0726 1.8289 13 6 -0.1133 -5.1897 0.9986 14 1 -0.5442 -5.2254 -0.0020 15 6 -0.4936 -6.3492 1.9217 16 7 -0.7430 -7.5498 1.1201 17 6 -1.0898 -8.7035 1.7245 18 8 -1.2004 -8.7465 2.9349 19 6 -1.3349 -9.9129 0.9186 20 7 -1.2538 -10.0182 -0.3904 21 7 -1.5260 -11.2060 -0.7945 22 1 -1.5208 -11.4828 -1.7241 23 6 -1.8249 -12.0323 0.2572 24 6 -2.1799 -13.3719 0.3795 25 6 -2.4030 -13.9047 1.6184 26 6 -2.2928 -13.1231 2.7613 27 6 -1.9500 -11.8028 2.6692 28 6 -1.7111 -11.2422 1.4178 29 6 0.0734 -3.8121 1.6373 30 1 -0.1320 -3.6798 2.6996 31 6 -0.0300 -2.5685 0.7283 32 1 -0.4850 0.8402 0.0004 33 1 1.4042 -4.1211 -1.0184 34 1 2.9076 -3.7787 -0.1098 35 1 -1.3942 -6.0903 2.4782 36 1 0.3219 -6.5409 2.6190 37 1 -0.6544 -7.5156 0.1548 38 1 -2.2678 -13.9916 -0.5006 39 1 -2.6748 -14.9460 1.7094 40 1 -2.4790 -13.5620 3.7304 41 1 -1.8653 -11.1993 3.5608 42 1 -0.7329 -2.7495 -0.0850 43 1 -0.3352 -1.6978 1.3086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979020877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:58 Heat of formation + Delta-G solvation = 113.968650 kcal Electronic energy + Delta-G solvation = -25745.897777 eV Core-core repulsion = 21987.183766 eV Total energy + Delta-G solvation = -3758.714012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.80253 -39.56605 -38.52080 -38.10284 -34.96039 -33.38583 -32.81785 -30.90300 -30.57178 -30.16139 -27.50160 -26.94896 -25.20781 -23.94253 -23.26895 -22.63192 -21.07100 -20.57932 -19.69392 -19.23612 -18.54177 -17.77260 -16.89989 -16.73106 -16.17729 -15.82896 -15.62129 -14.99857 -14.85568 -14.58289 -14.36633 -14.10587 -13.79525 -13.50246 -13.07151 -12.76042 -12.63362 -12.55793 -12.38144 -11.84471 -11.60507 -11.31030 -11.22341 -11.07397 -10.81382 -10.62176 -10.50107 -10.31495 -10.22948 -10.11554 -9.72516 -9.41138 -9.15874 -9.13320 -8.95782 -8.62469 -8.45209 -6.85742 -5.79383 -3.13319 0.47405 0.99271 1.60857 2.31255 3.00143 3.09970 3.38431 3.44091 3.46289 3.47254 4.01040 4.11994 4.19368 4.43505 4.48030 4.61528 4.81167 4.92667 5.03002 5.14403 5.28897 5.32875 5.42982 5.46188 5.54184 5.60142 5.79832 5.80981 5.84381 5.93535 5.97573 6.06737 6.15577 6.25577 6.33414 6.43094 6.56539 6.62513 6.68605 6.72588 6.93033 7.29972 7.37537 7.54251 7.56618 7.72734 8.09654 8.21680 9.11660 9.74610 10.51979 11.35037 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.001899 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.706399 B =14738.574629 C =15082.428563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.155 3.845 11 C -0.171 4.171 12 H 0.107 0.893 13 C -0.154 4.154 14 H 0.104 0.896 15 C 0.154 3.846 16 N -0.708 5.708 17 C 0.603 3.397 18 O -0.532 6.532 19 C 0.008 3.992 20 N -0.204 5.204 21 N -0.414 5.414 22 H 0.448 0.552 23 C 0.063 3.937 24 C -0.121 4.121 25 C -0.083 4.083 26 C -0.142 4.142 27 C -0.042 4.042 28 C -0.109 4.109 29 C -0.161 4.161 30 H 0.102 0.898 31 C 0.184 3.816 32 H 0.254 0.746 33 H 0.027 0.973 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.024 0.976 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 -28.645 0.902 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.191 4.191 12 H 0.125 0.875 13 C -0.173 4.173 14 H 0.122 0.878 15 C 0.031 3.969 16 N -0.359 5.359 17 C 0.387 3.613 18 O -0.407 6.407 19 C -0.164 4.164 20 N -0.034 5.034 21 N -0.134 5.134 22 H 0.293 0.707 23 C -0.050 4.050 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.161 4.161 27 C -0.062 4.062 28 C -0.116 4.116 29 C -0.182 4.182 30 H 0.120 0.880 31 C 0.058 3.942 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.042 0.958 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.494 -27.692 0.810 28.243 hybrid contribution 0.267 0.172 -0.450 0.551 sum -5.227 -27.520 0.360 28.014 Atomic orbital electron populations 1.69906 1.05058 1.25415 1.55764 1.24898 0.95644 0.97984 1.01803 0.86123 0.78752 0.83260 0.77623 1.21482 1.21540 1.20568 1.18981 0.90849 0.82399 1.43255 0.90615 1.45150 1.13748 0.99964 1.72910 1.21717 0.97098 0.85857 0.92447 1.24714 0.89728 1.02236 1.02464 0.87464 1.22549 1.00574 0.93958 1.00210 0.87846 1.20954 1.01258 0.81890 0.92749 1.45886 1.68963 1.09465 1.11571 1.16622 0.77277 0.81118 0.86309 1.90805 1.52388 1.84509 1.12981 1.22813 1.09603 0.94886 0.89061 1.72918 1.12957 1.03211 1.14294 1.43028 1.56068 1.04886 1.09416 0.70720 1.19213 1.03657 0.94169 0.87939 1.19782 1.04717 0.90905 0.98855 1.20766 0.98014 1.00031 0.91577 1.20876 1.02424 0.93780 0.98996 1.20447 0.94877 0.94786 0.96064 1.19424 1.06310 0.91808 0.94093 1.24177 1.02246 0.91571 1.00195 0.87954 1.21077 0.86871 0.92767 0.93490 0.93564 0.95548 0.93351 0.90772 0.91109 0.75651 0.85392 0.85085 0.85164 0.84242 0.95838 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.88 55.49 0.60 -26.23 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.59 -15.26 3.38 -166.73 -0.56 -15.82 16 10 C 0.16 3.25 7.10 -0.57 0.00 3.25 16 11 C -0.17 -3.02 7.03 -87.38 -0.61 -3.63 16 12 H 0.11 1.74 8.12 -51.93 -0.42 1.32 16 13 C -0.15 -2.39 5.34 -90.62 -0.48 -2.87 16 14 H 0.10 1.61 8.04 -51.93 -0.42 1.20 16 15 C 0.15 2.13 5.95 -4.04 -0.02 2.11 16 16 N -0.71 -9.09 5.55 -61.39 -0.34 -9.44 16 17 C 0.60 8.48 7.81 -12.54 -0.10 8.39 16 18 O -0.53 -8.77 16.40 5.26 0.09 -8.69 16 19 C 0.01 0.10 7.32 -80.76 -0.59 -0.49 16 20 N -0.20 -2.21 11.80 34.46 0.41 -1.80 16 21 N -0.41 -3.37 6.85 32.34 0.22 -3.15 16 22 H 0.45 1.91 8.96 -190.49 -1.71 0.20 16 23 C 0.06 0.57 7.38 -84.22 -0.62 -0.05 16 24 C -0.12 -0.80 10.03 -39.81 -0.40 -1.20 16 25 C -0.08 -0.51 9.96 -39.90 -0.40 -0.91 16 26 C -0.14 -1.05 9.98 -39.89 -0.40 -1.45 16 27 C -0.04 -0.42 9.87 -39.78 -0.39 -0.81 16 28 C -0.11 -1.25 6.34 -105.05 -0.67 -1.92 16 29 C -0.16 -3.04 6.77 -89.22 -0.60 -3.65 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 31 C 0.18 4.40 5.70 -2.41 -0.01 4.39 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 37 H 0.41 4.69 8.14 -40.82 -0.33 4.35 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.39 6.53 -51.93 -0.34 2.06 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -33.50 364.49 -11.64 -45.13 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.96 Total: 3.17 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -5.56 Total: -5.62 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.33 Total: -56.44 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.50 -11.64 -45.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979020877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.103 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds