Wall clock time and date at job start Tue Mar 31 2020 15:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00308 * 2 1 4 4 H 1.48503 * 109.46929 * 270.00376 * 3 2 1 5 5 H 1.48504 * 109.46954 * 30.00170 * 3 2 1 6 6 H 1.48496 * 109.46958 * 150.00242 * 3 2 1 7 7 C 1.38811 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99933 * 170.56976 * 7 2 1 9 9 N 1.36936 * 119.99969 * 350.57353 * 7 2 1 10 10 C 1.48151 * 127.83932 * 164.33413 * 9 7 2 11 11 C 1.57696 * 104.67323 * 139.77182 * 10 9 7 12 12 H 1.08999 * 120.32121 * 244.64513 * 11 10 9 13 13 C 1.52997 * 116.11055 * 87.30875 * 11 10 9 14 14 H 1.08999 * 117.40649 * 16.95603 * 13 11 10 15 15 C 1.53008 * 117.44169 * 161.63709 * 13 11 10 16 16 N 1.46497 * 109.46812 * 244.24178 * 15 13 11 17 17 C 1.34778 * 119.99680 * 179.72392 * 16 15 13 18 18 O 1.21618 * 119.99951 * 0.27441 * 17 16 15 19 19 C 1.47388 * 119.99926 * 180.27409 * 17 16 15 20 20 N 1.31572 * 126.82697 * 0.02854 * 19 17 16 21 21 N 1.28382 * 111.96663 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.36844 * 179.97438 * 21 20 19 23 23 C 1.37045 * 111.25762 * 359.97438 * 21 20 19 24 24 C 1.39121 * 134.72412 * 179.97438 * 23 21 20 25 25 C 1.36693 * 119.78189 * 179.27169 * 24 23 21 26 26 C 1.38896 * 120.89154 * 0.62371 * 25 24 23 27 27 C 1.36719 * 120.52619 * 359.60475 * 26 25 24 28 28 C 1.39196 * 119.50672 * 0.02562 * 27 26 25 29 29 C 1.52996 * 60.55832 * 269.28657 * 13 11 10 30 30 H 1.08999 * 119.54431 * 248.23643 * 29 13 11 31 31 C 1.48150 * 127.84054 * 344.32976 * 9 7 2 32 32 H 0.97008 * 119.99568 * 359.97438 * 1 2 3 33 33 H 1.08989 * 110.40947 * 259.19704 * 10 9 7 34 34 H 1.09002 * 110.40517 * 21.51224 * 10 9 7 35 35 H 1.08995 * 109.47190 * 124.24040 * 15 13 11 36 36 H 1.08999 * 109.46748 * 4.24205 * 15 13 11 37 37 H 0.96999 * 120.00404 * 0.02562 * 16 15 13 38 38 H 1.08000 * 120.11086 * 359.97438 * 24 23 21 39 39 H 1.08001 * 119.55522 * 180.22833 * 25 24 23 40 40 H 1.08006 * 119.73612 * 179.63494 * 26 25 24 41 41 H 1.07997 * 120.24693 * 180.02562 * 27 26 25 42 42 H 1.09001 * 110.40790 * 100.80061 * 31 9 7 43 43 H 1.08996 * 110.40348 * 338.37848 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0792 -1.2086 -0.1527 9 7 1.3393 -2.3799 0.1953 10 6 1.8183 -3.7548 -0.0791 11 6 1.2958 -4.6102 1.1383 12 1 2.0010 -5.0726 1.8289 13 6 -0.1133 -5.1897 0.9986 14 1 -0.5442 -5.2254 -0.0020 15 6 -0.4936 -6.3492 1.9217 16 7 -0.7430 -7.5498 1.1201 17 6 -1.0898 -8.7035 1.7245 18 8 -1.2004 -8.7465 2.9349 19 6 -1.3349 -9.9129 0.9186 20 7 -1.2538 -10.0182 -0.3904 21 7 -1.5260 -11.2060 -0.7945 22 1 -1.5208 -11.4828 -1.7241 23 6 -1.8249 -12.0323 0.2572 24 6 -2.1799 -13.3719 0.3795 25 6 -2.4030 -13.9047 1.6184 26 6 -2.2928 -13.1231 2.7613 27 6 -1.9500 -11.8028 2.6692 28 6 -1.7111 -11.2422 1.4178 29 6 0.0734 -3.8121 1.6373 30 1 -0.1320 -3.6798 2.6996 31 6 -0.0300 -2.5685 0.7283 32 1 -0.4850 0.8402 0.0004 33 1 1.4042 -4.1211 -1.0184 34 1 2.9076 -3.7787 -0.1098 35 1 -1.3942 -6.0903 2.4782 36 1 0.3219 -6.5409 2.6190 37 1 -0.6544 -7.5156 0.1548 38 1 -2.2678 -13.9916 -0.5006 39 1 -2.6748 -14.9460 1.7094 40 1 -2.4790 -13.5620 3.7304 41 1 -1.8653 -11.1993 3.5608 42 1 -0.7329 -2.7495 -0.0850 43 1 -0.3352 -1.6978 1.3086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979020877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:57 Heat of formation + Delta-G solvation = 91.960404 kcal Electronic energy + Delta-G solvation = -25746.852127 eV Core-core repulsion = 21987.183766 eV Total energy + Delta-G solvation = -3759.668361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51464 -40.78252 -39.97847 -38.70203 -36.36485 -35.02121 -33.61585 -32.68866 -31.21811 -30.91995 -29.00106 -28.65187 -26.88472 -24.85541 -24.06987 -23.29569 -22.72591 -21.87656 -20.95103 -20.76299 -19.23699 -18.82401 -18.56618 -17.68749 -17.00669 -16.97667 -16.69603 -16.17980 -16.03166 -15.99322 -15.31583 -15.24156 -14.97883 -14.69475 -14.56599 -14.40692 -14.14217 -13.37210 -13.18060 -13.17356 -12.89193 -12.88071 -12.69608 -12.33510 -12.23757 -12.04072 -11.96154 -11.89480 -11.75676 -11.38877 -11.22801 -10.94078 -10.71629 -10.57281 -10.11580 -9.79161 -9.10151 -8.90685 -7.92018 -5.28051 -0.23741 0.35950 0.83646 1.46042 1.47919 1.57414 1.65693 2.03129 2.17985 2.47640 2.75408 2.81275 3.19718 3.26544 3.47983 3.60683 3.69703 3.73819 3.87538 4.13112 4.17472 4.24432 4.26811 4.34039 4.44231 4.48102 4.58189 4.66178 4.72530 4.76520 4.92423 5.01516 5.05291 5.16658 5.21080 5.34052 5.39922 5.44989 5.47257 5.53177 5.58322 5.66825 5.83372 6.08090 6.17852 6.38005 6.73751 7.00946 7.06441 7.68283 8.46975 9.21889 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.001899 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.706399 B =14738.574629 C =15082.428563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.131 0.869 13 C -0.116 4.116 14 H 0.106 0.894 15 C 0.164 3.836 16 N -0.701 5.701 17 C 0.603 3.397 18 O -0.565 6.565 19 C -0.028 4.028 20 N -0.203 5.203 21 N -0.395 5.395 22 H 0.464 0.536 23 C 0.054 3.946 24 C -0.112 4.112 25 C -0.082 4.082 26 C -0.131 4.131 27 C -0.075 4.075 28 C -0.137 4.137 29 C -0.174 4.174 30 H 0.115 0.885 31 C 0.189 3.811 32 H 0.250 0.750 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.002 0.998 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -31.928 0.356 32.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.023 3.977 11 C -0.178 4.178 12 H 0.149 0.851 13 C -0.135 4.135 14 H 0.124 0.876 15 C 0.040 3.960 16 N -0.353 5.353 17 C 0.389 3.611 18 O -0.442 6.442 19 C -0.197 4.197 20 N -0.035 5.035 21 N -0.118 5.118 22 H 0.313 0.687 23 C -0.059 4.059 24 C -0.133 4.133 25 C -0.102 4.102 26 C -0.150 4.150 27 C -0.096 4.096 28 C -0.144 4.144 29 C -0.195 4.195 30 H 0.132 0.868 31 C 0.063 3.937 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.182 0.818 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.019 0.981 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.144 -31.013 0.235 31.438 hybrid contribution 0.128 1.017 -0.356 1.085 sum -5.016 -29.996 -0.121 30.412 Atomic orbital electron populations 1.70102 1.06527 1.25737 1.57135 1.25755 0.96519 1.01333 1.02155 0.85063 0.77716 0.78830 0.77581 1.21043 1.21918 1.19364 1.19373 0.91389 0.83684 1.42499 0.90176 1.45464 1.14269 1.01186 1.73513 1.21874 0.97662 0.84226 0.93916 1.24654 0.90391 1.01713 1.00994 0.85140 1.22417 0.98541 0.92375 1.00183 0.87568 1.20783 1.01402 0.81511 0.92274 1.45762 1.68754 1.08936 1.11834 1.16833 0.76543 0.81661 0.86088 1.90774 1.53919 1.85110 1.14375 1.22573 1.12477 0.94966 0.89723 1.72820 1.12618 1.04433 1.13620 1.43099 1.54341 1.04036 1.10293 0.68663 1.19479 1.04270 0.95047 0.87126 1.20274 1.02629 0.89900 1.00497 1.21234 0.96707 1.01554 0.90743 1.21227 1.00258 0.92661 1.00861 1.20477 0.97615 0.96160 0.95307 1.19689 1.07317 0.91853 0.95538 1.23872 1.04592 0.91031 0.99983 0.86754 1.20812 0.86041 0.93730 0.93071 0.94125 0.95261 0.92632 0.90747 0.90731 0.74774 0.81836 0.81413 0.82973 0.86025 0.98051 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 10.88 21.65 0.24 -57.29 16 2 C -0.06 -3.67 5.40 84.86 0.46 -3.22 16 3 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.66 10.35 84.03 0.87 -12.79 16 8 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 9 N -0.62 -32.43 3.38 -681.42 -2.30 -34.74 16 10 C 0.15 6.14 7.10 87.73 0.62 6.77 16 11 C -0.16 -5.33 7.03 -8.70 -0.06 -5.39 16 12 H 0.13 3.88 8.12 -2.39 -0.02 3.86 16 13 C -0.12 -3.46 5.34 -10.79 -0.06 -3.52 16 14 H 0.11 3.18 8.04 -2.39 -0.02 3.17 16 15 C 0.16 4.33 5.95 86.38 0.51 4.84 16 16 N -0.70 -17.59 5.55 -466.40 -2.59 -20.18 16 17 C 0.60 17.19 7.81 86.65 0.68 17.86 16 18 O -0.56 -19.18 16.40 -4.09 -0.07 -19.25 16 19 C -0.03 -0.70 7.32 43.86 0.32 -0.38 16 20 N -0.20 -4.21 11.80 -44.88 -0.53 -4.74 16 21 N -0.39 -5.67 6.85 -51.61 -0.35 -6.03 16 22 H 0.46 2.78 8.96 -220.04 -1.97 0.81 16 23 C 0.05 0.87 7.38 39.18 0.29 1.16 16 24 C -0.11 -1.07 10.03 22.12 0.22 -0.84 16 25 C -0.08 -0.70 9.96 22.07 0.22 -0.49 16 26 C -0.13 -1.69 9.98 22.07 0.22 -1.47 16 27 C -0.08 -1.54 9.87 22.14 0.22 -1.32 16 28 C -0.14 -3.11 6.34 -20.14 -0.13 -3.24 16 29 C -0.17 -6.55 6.77 -9.89 -0.07 -6.62 16 30 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 31 C 0.19 9.39 5.70 86.53 0.49 9.88 16 32 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.98 7.94 -2.39 -0.02 1.96 16 37 H 0.42 9.14 8.14 -92.71 -0.75 8.39 16 38 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.12 2.78 7.65 -2.91 -0.02 2.76 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.05 2.98 6.53 -2.39 -0.02 2.96 16 Total: -1.00 -75.94 364.49 -0.43 -76.37 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -1.66 Total: 16.68 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.81 Total: 1.23 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -5.54 Total: -122.97 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.94 -0.43 -76.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979020877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.327 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds