Wall clock time and date at job start Tue Mar 31 2020 14:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99825 * 2 1 4 4 H 1.48500 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47189 * 300.00157 * 3 2 1 6 6 H 1.48500 * 109.47493 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00037 * 170.56857 * 7 2 1 9 9 N 1.36943 * 119.99703 * 350.56123 * 7 2 1 10 10 C 1.48145 * 127.83434 * 164.34371 * 9 7 2 11 11 C 1.57694 * 104.67380 * 139.77746 * 10 9 7 12 12 H 1.09003 * 120.31911 * 244.63861 * 11 10 9 13 13 C 1.52994 * 116.11391 * 87.30435 * 11 10 9 14 14 H 1.08999 * 117.40751 * 16.95392 * 13 11 10 15 15 C 1.53004 * 117.44218 * 161.63813 * 13 11 10 16 16 N 1.46498 * 109.47275 * 244.23935 * 15 13 11 17 17 C 1.34776 * 120.00404 * 180.02562 * 16 15 13 18 18 O 1.21667 * 119.99634 * 359.97438 * 17 16 15 19 19 C 1.46921 * 120.00261 * 180.02562 * 17 16 15 20 20 C 1.36363 * 126.82740 * 0.02719 * 19 17 16 21 21 N 1.35576 * 109.74786 * 180.02562 * 20 19 17 22 22 H 0.96997 * 124.71605 * 180.02562 * 21 20 19 23 23 C 1.37693 * 110.56017 * 359.97438 * 21 20 19 24 24 N 1.32678 * 132.94739 * 180.02562 * 23 21 20 25 25 C 1.31604 * 121.69319 * 180.02562 * 24 23 21 26 26 C 1.38585 * 121.53877 * 359.97438 * 25 24 23 27 27 C 1.38333 * 119.32990 * 0.02562 * 26 25 24 28 28 C 1.39352 * 118.05213 * 0.27307 * 27 26 25 29 29 C 1.52998 * 60.55563 * 269.28818 * 13 11 10 30 30 H 1.09002 * 119.54127 * 248.23425 * 29 13 11 31 31 C 1.48144 * 127.83611 * 344.33999 * 9 7 2 32 32 H 0.97007 * 119.99767 * 359.97438 * 1 2 3 33 33 H 1.09007 * 110.39968 * 259.19599 * 10 9 7 34 34 H 1.08996 * 110.40979 * 21.50610 * 10 9 7 35 35 H 1.08997 * 109.46764 * 124.23912 * 15 13 11 36 36 H 1.08997 * 109.47038 * 4.23988 * 15 13 11 37 37 H 0.97006 * 119.99849 * 0.02562 * 16 15 13 38 38 H 1.08001 * 125.12190 * 359.96925 * 20 19 17 39 39 H 1.08001 * 119.22872 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.33552 * 179.97438 * 26 25 24 41 41 H 1.07999 * 120.97385 * 180.02562 * 27 26 25 42 42 H 1.09004 * 110.40719 * 100.80545 * 31 9 7 43 43 H 1.08996 * 110.41251 * 338.36512 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0793 -1.2084 -0.1538 9 7 1.3394 -2.3801 0.1934 10 6 1.8185 -3.7547 -0.0820 11 6 1.2960 -4.6111 1.1347 12 1 2.0014 -5.0740 1.8249 13 6 -0.1130 -5.1905 0.9946 14 1 -0.5439 -5.2255 -0.0060 15 6 -0.4931 -6.3508 1.9168 16 7 -0.7426 -7.5508 1.1144 17 6 -1.0953 -8.7034 1.7174 18 8 -1.2059 -8.7474 2.9282 19 6 -1.3449 -9.9070 0.9127 20 6 -1.2607 -10.0152 -0.4440 21 7 -1.5629 -11.2816 -0.8222 22 1 -1.5695 -11.5975 -1.7393 23 6 -1.8579 -12.0571 0.2766 24 7 -2.2043 -13.3300 0.4180 25 6 -2.4409 -13.8548 1.6015 26 6 -2.3395 -13.1031 2.7612 27 6 -1.9818 -11.7696 2.6753 28 6 -1.7425 -11.2354 1.4106 29 6 0.0737 -3.8133 1.6343 30 1 -0.1317 -3.6820 2.6968 31 6 -0.0299 -2.5690 0.7263 32 1 -0.4850 0.8401 0.0004 33 1 1.4043 -4.1203 -1.0217 34 1 2.9078 -3.7785 -0.1129 35 1 -1.3938 -6.0922 2.4735 36 1 0.3223 -6.5429 2.6140 37 1 -0.6541 -7.5158 0.1490 38 1 -0.9943 -9.2127 -1.1160 39 1 -2.7207 -14.8957 1.6704 40 1 -2.5385 -13.5535 3.7224 41 1 -1.8944 -11.1592 3.5620 42 1 -0.7327 -2.7495 -0.0871 43 1 -0.3350 -1.6988 1.3074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979076602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:29 Heat of formation + Delta-G solvation = 98.246436 kcal Electronic energy + Delta-G solvation = -25751.616942 eV Core-core repulsion = 21992.221163 eV Total energy + Delta-G solvation = -3759.395778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02937 -39.53622 -38.57917 -38.11991 -34.94584 -33.39258 -33.20538 -31.06408 -30.54239 -29.77219 -27.29330 -26.95964 -25.02487 -24.12825 -22.95884 -22.84086 -21.11646 -20.44588 -19.51649 -19.23814 -18.79792 -17.23437 -16.86188 -16.60193 -16.35150 -15.71422 -15.60424 -15.12003 -14.95617 -14.77510 -14.28093 -13.84119 -13.60279 -13.47002 -13.22766 -13.08519 -12.82400 -12.69964 -12.61354 -12.36692 -11.88069 -11.26700 -11.10219 -10.86426 -10.70115 -10.63640 -10.30050 -10.22060 -10.11325 -9.77081 -9.70815 -9.42740 -9.15922 -8.98785 -8.91009 -8.66154 -8.47203 -6.89522 -5.82815 -3.16986 0.53628 0.96561 1.68530 2.26295 3.09579 3.24262 3.35921 3.42181 3.44526 3.62231 4.08130 4.15097 4.21778 4.37986 4.44215 4.62905 4.82827 4.89089 4.91858 5.08440 5.18450 5.29976 5.39039 5.43659 5.48706 5.51702 5.76507 5.79525 5.89066 5.91964 5.95281 5.98082 6.06569 6.22087 6.36099 6.48372 6.53304 6.63539 6.68399 6.75012 6.88527 7.33338 7.48900 7.50942 7.60503 7.69773 8.18166 8.21090 9.08326 9.71207 10.48074 11.31587 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.039575 B = 0.001895 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.342065 B =14775.163021 C =15119.695818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.156 3.844 11 C -0.172 4.172 12 H 0.107 0.893 13 C -0.153 4.153 14 H 0.102 0.898 15 C 0.156 3.844 16 N -0.721 5.721 17 C 0.587 3.413 18 O -0.544 6.544 19 C -0.215 4.215 20 C 0.120 3.880 21 N -0.565 5.565 22 H 0.425 0.575 23 C 0.276 3.724 24 N -0.498 5.498 25 C 0.136 3.864 26 C -0.197 4.197 27 C -0.018 4.018 28 C -0.109 4.109 29 C -0.162 4.162 30 H 0.102 0.898 31 C 0.184 3.816 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.398 0.602 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.024 0.976 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -25.653 0.192 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.125 0.875 13 C -0.172 4.172 14 H 0.120 0.880 15 C 0.033 3.967 16 N -0.372 5.372 17 C 0.375 3.625 18 O -0.422 6.422 19 C -0.227 4.227 20 C -0.013 4.013 21 N -0.170 5.170 22 H 0.263 0.737 23 C 0.044 3.956 24 N -0.211 5.211 25 C -0.030 4.030 26 C -0.218 4.218 27 C -0.044 4.044 28 C -0.116 4.116 29 C -0.183 4.183 30 H 0.120 0.880 31 C 0.058 3.942 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.232 0.768 38 H 0.206 0.794 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.041 0.959 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.000 -25.863 0.132 26.342 hybrid contribution 0.502 1.217 -0.217 1.334 sum -4.499 -24.646 -0.085 25.053 Atomic orbital electron populations 1.69912 1.05064 1.25340 1.55804 1.24901 0.95651 0.98007 1.01760 0.86047 0.78892 0.83514 0.77291 1.20355 1.21701 1.21582 1.19037 0.90892 0.82368 1.43199 0.90532 1.45159 1.13743 0.99987 1.72889 1.21713 0.97098 0.85874 0.92394 1.24719 0.89736 1.02269 1.02480 0.87491 1.22548 1.00465 0.94069 1.00125 0.87971 1.20878 1.01091 0.82002 0.92712 1.45848 1.70583 1.10035 1.10757 1.17138 0.76559 0.81795 0.87016 1.90773 1.52571 1.84993 1.13898 1.20032 1.16087 0.94204 0.92342 1.22225 0.97242 0.86371 0.95429 1.41301 1.58868 1.08307 1.08532 0.73667 1.18352 1.01131 0.89911 0.86228 1.66484 1.15827 1.10159 1.28584 1.22472 0.94832 0.99690 0.85976 1.21990 1.04800 0.94769 1.00290 1.21180 0.92129 0.94493 0.96646 1.19428 1.05102 0.93191 0.93829 1.24179 1.02263 0.91618 1.00211 0.87998 1.21077 0.86863 0.92779 0.93481 0.93592 0.95617 0.93353 0.91049 0.91360 0.76774 0.79392 0.82041 0.84207 0.83683 0.95854 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 10.88 55.49 0.60 -25.86 16 2 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 3 Si 0.91 21.71 29.56 -169.99 -5.03 16.68 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.23 10.35 -15.06 -0.16 -6.39 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.59 -14.91 3.38 -166.73 -0.56 -15.48 16 10 C 0.16 3.13 7.10 -0.57 0.00 3.13 16 11 C -0.17 -2.90 7.03 -87.39 -0.61 -3.51 16 12 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 13 C -0.15 -2.22 5.34 -90.62 -0.48 -2.70 16 14 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 15 C 0.16 2.03 5.95 -4.04 -0.02 2.01 16 16 N -0.72 -7.93 5.54 -61.54 -0.34 -8.27 16 17 C 0.59 7.56 7.80 -12.75 -0.10 7.46 16 18 O -0.54 -8.96 16.26 5.22 0.08 -8.88 16 19 C -0.22 -2.31 6.27 -103.36 -0.65 -2.96 16 20 C 0.12 0.83 11.34 -16.57 -0.19 0.64 16 21 N -0.57 -4.04 5.97 -11.97 -0.07 -4.11 16 22 H 0.42 1.75 8.96 -40.82 -0.37 1.38 16 23 C 0.28 2.87 8.41 -155.52 -1.31 1.57 16 24 N -0.50 -5.15 10.39 -12.29 -0.13 -5.28 16 25 C 0.14 1.10 11.15 -17.52 -0.20 0.91 16 26 C -0.20 -1.59 10.10 -39.42 -0.40 -1.99 16 27 C -0.02 -0.19 9.97 -39.13 -0.39 -0.58 16 28 C -0.11 -1.26 6.28 -104.93 -0.66 -1.91 16 29 C -0.16 -2.97 6.77 -89.22 -0.60 -3.57 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 C 0.18 4.30 5.70 -2.41 -0.01 4.28 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 37 H 0.40 3.20 7.29 -40.82 -0.30 2.90 16 38 H 0.19 0.52 7.38 -52.49 -0.39 0.13 16 39 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.15 1.59 7.55 -52.49 -0.40 1.19 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.36 6.53 -51.93 -0.34 2.02 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -35.18 363.05 -11.39 -46.57 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.54 Total: 3.04 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -5.88 Total: -3.89 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.50 Total: -59.00 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.18 -11.39 -46.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979076602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.818 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds