Wall clock time and date at job start Tue Mar 31 2020 14:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99825 * 2 1 4 4 H 1.48500 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47189 * 300.00157 * 3 2 1 6 6 H 1.48500 * 109.47493 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00037 * 170.56857 * 7 2 1 9 9 N 1.36943 * 119.99703 * 350.56123 * 7 2 1 10 10 C 1.48145 * 127.83434 * 164.34371 * 9 7 2 11 11 C 1.57694 * 104.67380 * 139.77746 * 10 9 7 12 12 H 1.09003 * 120.31911 * 244.63861 * 11 10 9 13 13 C 1.52994 * 116.11391 * 87.30435 * 11 10 9 14 14 H 1.08999 * 117.40751 * 16.95392 * 13 11 10 15 15 C 1.53004 * 117.44218 * 161.63813 * 13 11 10 16 16 N 1.46498 * 109.47275 * 244.23935 * 15 13 11 17 17 C 1.34776 * 120.00404 * 180.02562 * 16 15 13 18 18 O 1.21667 * 119.99634 * 359.97438 * 17 16 15 19 19 C 1.46921 * 120.00261 * 180.02562 * 17 16 15 20 20 C 1.36363 * 126.82740 * 0.02719 * 19 17 16 21 21 N 1.35576 * 109.74786 * 180.02562 * 20 19 17 22 22 H 0.96997 * 124.71605 * 180.02562 * 21 20 19 23 23 C 1.37693 * 110.56017 * 359.97438 * 21 20 19 24 24 N 1.32678 * 132.94739 * 180.02562 * 23 21 20 25 25 C 1.31604 * 121.69319 * 180.02562 * 24 23 21 26 26 C 1.38585 * 121.53877 * 359.97438 * 25 24 23 27 27 C 1.38333 * 119.32990 * 0.02562 * 26 25 24 28 28 C 1.39352 * 118.05213 * 0.27307 * 27 26 25 29 29 C 1.52998 * 60.55563 * 269.28818 * 13 11 10 30 30 H 1.09002 * 119.54127 * 248.23425 * 29 13 11 31 31 C 1.48144 * 127.83611 * 344.33999 * 9 7 2 32 32 H 0.97007 * 119.99767 * 359.97438 * 1 2 3 33 33 H 1.09007 * 110.39968 * 259.19599 * 10 9 7 34 34 H 1.08996 * 110.40979 * 21.50610 * 10 9 7 35 35 H 1.08997 * 109.46764 * 124.23912 * 15 13 11 36 36 H 1.08997 * 109.47038 * 4.23988 * 15 13 11 37 37 H 0.97006 * 119.99849 * 0.02562 * 16 15 13 38 38 H 1.08001 * 125.12190 * 359.96925 * 20 19 17 39 39 H 1.08001 * 119.22872 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.33552 * 179.97438 * 26 25 24 41 41 H 1.07999 * 120.97385 * 180.02562 * 27 26 25 42 42 H 1.09004 * 110.40719 * 100.80545 * 31 9 7 43 43 H 1.08996 * 110.41251 * 338.36512 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0793 -1.2084 -0.1538 9 7 1.3394 -2.3801 0.1934 10 6 1.8185 -3.7547 -0.0820 11 6 1.2960 -4.6111 1.1347 12 1 2.0014 -5.0740 1.8249 13 6 -0.1130 -5.1905 0.9946 14 1 -0.5439 -5.2255 -0.0060 15 6 -0.4931 -6.3508 1.9168 16 7 -0.7426 -7.5508 1.1144 17 6 -1.0953 -8.7034 1.7174 18 8 -1.2059 -8.7474 2.9282 19 6 -1.3449 -9.9070 0.9127 20 6 -1.2607 -10.0152 -0.4440 21 7 -1.5629 -11.2816 -0.8222 22 1 -1.5695 -11.5975 -1.7393 23 6 -1.8579 -12.0571 0.2766 24 7 -2.2043 -13.3300 0.4180 25 6 -2.4409 -13.8548 1.6015 26 6 -2.3395 -13.1031 2.7612 27 6 -1.9818 -11.7696 2.6753 28 6 -1.7425 -11.2354 1.4106 29 6 0.0737 -3.8133 1.6343 30 1 -0.1317 -3.6820 2.6968 31 6 -0.0299 -2.5690 0.7263 32 1 -0.4850 0.8401 0.0004 33 1 1.4043 -4.1203 -1.0217 34 1 2.9078 -3.7785 -0.1129 35 1 -1.3938 -6.0922 2.4735 36 1 0.3223 -6.5429 2.6140 37 1 -0.6541 -7.5158 0.1490 38 1 -0.9943 -9.2127 -1.1160 39 1 -2.7207 -14.8957 1.6704 40 1 -2.5385 -13.5535 3.7224 41 1 -1.8944 -11.1592 3.5620 42 1 -0.7327 -2.7495 -0.0871 43 1 -0.3350 -1.6988 1.3074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979076602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:28 Heat of formation + Delta-G solvation = 74.908045 kcal Electronic energy + Delta-G solvation = -25752.628970 eV Core-core repulsion = 21992.221163 eV Total energy + Delta-G solvation = -3760.407807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68964 -40.67142 -39.89026 -38.80966 -36.28665 -34.95345 -33.93242 -32.74659 -31.35081 -30.55274 -28.82506 -28.50919 -26.64405 -24.78982 -23.93824 -23.48498 -22.68817 -21.74616 -20.85833 -20.43809 -19.50281 -18.79600 -17.90449 -17.50849 -17.09494 -16.82312 -16.52462 -16.40198 -15.90205 -15.86380 -15.67875 -15.19238 -14.84512 -14.57000 -14.41192 -14.18376 -14.08894 -13.87769 -13.36443 -13.30928 -13.16911 -12.98523 -12.85213 -12.72694 -12.25727 -11.92858 -11.85105 -11.74314 -11.43590 -11.25413 -10.92198 -10.68185 -10.57160 -10.39199 -10.03934 -9.56260 -9.15694 -8.88815 -7.91383 -5.26854 -0.12909 0.28730 0.94710 1.46568 1.47646 1.58196 1.69546 2.14707 2.40448 2.48170 2.79741 2.91087 3.27346 3.50707 3.60909 3.67266 3.71875 3.75633 3.90197 4.03545 4.16425 4.20548 4.31110 4.32532 4.39541 4.46080 4.55044 4.62065 4.73076 4.81745 4.87269 4.96340 5.05154 5.21511 5.25334 5.33258 5.37204 5.37773 5.46921 5.51522 5.55977 5.68930 5.83588 6.19519 6.25015 6.65243 6.95734 7.02491 7.31743 7.69986 8.48132 9.22571 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.039575 B = 0.001895 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.342065 B =14775.163021 C =15119.695818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.150 3.850 11 C -0.158 4.158 12 H 0.127 0.873 13 C -0.109 4.109 14 H 0.115 0.885 15 C 0.165 3.835 16 N -0.708 5.708 17 C 0.589 3.411 18 O -0.591 6.591 19 C -0.261 4.261 20 C 0.161 3.839 21 N -0.552 5.552 22 H 0.441 0.559 23 C 0.255 3.745 24 N -0.512 5.512 25 C 0.129 3.871 26 C -0.186 4.186 27 C -0.048 4.048 28 C -0.134 4.134 29 C -0.181 4.181 30 H 0.108 0.892 31 C 0.190 3.810 32 H 0.249 0.751 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.237 0.763 39 H 0.197 0.803 40 H 0.168 0.832 41 H 0.130 0.870 42 H 0.005 0.995 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -27.790 -1.044 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.024 3.976 11 C -0.178 4.178 12 H 0.145 0.855 13 C -0.128 4.128 14 H 0.133 0.867 15 C 0.042 3.958 16 N -0.360 5.360 17 C 0.378 3.622 18 O -0.473 6.473 19 C -0.272 4.272 20 C 0.027 3.973 21 N -0.157 5.157 22 H 0.283 0.717 23 C 0.024 3.976 24 N -0.225 5.225 25 C -0.035 4.035 26 C -0.207 4.207 27 C -0.075 4.075 28 C -0.141 4.141 29 C -0.202 4.202 30 H 0.126 0.874 31 C 0.064 3.936 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.253 0.747 39 H 0.214 0.786 40 H 0.186 0.814 41 H 0.148 0.852 42 H 0.023 0.977 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.330 -28.053 -1.158 28.409 hybrid contribution 0.283 1.770 0.126 1.796 sum -4.048 -26.284 -1.033 26.613 Atomic orbital electron populations 1.70100 1.06474 1.25603 1.57300 1.25722 0.96497 1.01245 1.02297 0.85025 0.78334 0.79322 0.76711 1.18895 1.21811 1.21942 1.19404 0.91379 0.83715 1.42177 0.90186 1.45474 1.14284 1.01276 1.73515 1.21887 0.97611 0.84032 0.94029 1.24644 0.90405 1.01740 1.00976 0.85517 1.22426 0.98061 0.91932 1.00336 0.86728 1.20639 1.00731 0.82095 0.92382 1.45610 1.70080 1.08871 1.11478 1.17419 0.75625 0.82510 0.86606 1.90745 1.54817 1.85733 1.15991 1.19877 1.20089 0.93345 0.93861 1.22871 0.93036 0.86818 0.94577 1.41377 1.57561 1.08015 1.08771 0.71731 1.18576 1.01999 0.90128 0.86934 1.66571 1.16179 1.10174 1.29615 1.23100 0.93946 1.01132 0.85351 1.22310 1.02903 0.93687 1.01755 1.21279 0.94137 0.95752 0.96300 1.19765 1.05602 0.94132 0.94592 1.23863 1.05053 0.91429 0.99814 0.87386 1.20802 0.86080 0.93613 0.93094 0.94178 0.94676 0.92792 0.91642 0.91645 0.74740 0.74723 0.78646 0.81443 0.85208 0.97715 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.52 10.88 21.65 0.24 -56.28 16 2 C -0.06 -3.61 5.39 84.86 0.46 -3.15 16 3 Si 0.98 45.22 29.56 68.60 2.03 47.25 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 7 C -0.24 -13.19 10.35 84.03 0.87 -12.32 16 8 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 9 N -0.62 -31.38 3.38 -681.41 -2.30 -33.68 16 10 C 0.15 5.80 7.10 87.73 0.62 6.43 16 11 C -0.16 -4.97 7.03 -8.70 -0.06 -5.03 16 12 H 0.13 3.56 8.12 -2.39 -0.02 3.54 16 13 C -0.11 -2.89 5.34 -10.80 -0.06 -2.94 16 14 H 0.11 2.85 8.04 -2.39 -0.02 2.83 16 15 C 0.17 3.96 5.95 86.38 0.51 4.48 16 16 N -0.71 -13.86 5.54 -466.86 -2.59 -16.45 16 17 C 0.59 14.62 7.80 86.52 0.67 15.30 16 18 O -0.59 -19.83 16.26 -4.24 -0.07 -19.90 16 19 C -0.26 -5.26 6.27 -19.05 -0.12 -5.38 16 20 C 0.16 1.69 11.34 83.68 0.95 2.64 16 21 N -0.55 -6.35 5.97 -191.78 -1.15 -7.49 16 22 H 0.44 2.18 8.96 -92.71 -0.83 1.35 16 23 C 0.26 4.96 8.41 133.76 1.13 6.09 16 24 N -0.51 -9.81 10.39 -192.80 -2.00 -11.81 16 25 C 0.13 1.88 11.15 84.81 0.95 2.83 16 26 C -0.19 -2.82 10.10 22.38 0.23 -2.59 16 27 C -0.05 -1.05 9.97 22.56 0.23 -0.82 16 28 C -0.13 -3.06 6.28 -20.06 -0.13 -3.18 16 29 C -0.18 -6.51 6.77 -9.89 -0.07 -6.57 16 30 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 31 C 0.19 9.09 5.70 86.54 0.49 9.58 16 32 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 33 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.67 7.94 -2.39 -0.02 1.65 16 37 H 0.42 5.06 7.29 -92.70 -0.68 4.39 16 38 H 0.24 0.01 7.38 -2.91 -0.02 -0.01 16 39 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.13 3.10 7.55 -2.91 -0.02 3.08 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.05 2.73 6.53 -2.39 -0.02 2.71 16 Total: -1.00 -80.75 363.05 0.39 -80.36 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.44 Total: 12.64 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.67 Total: 5.35 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -7.80 Total: -125.72 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.90 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.75 0.39 -80.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979076602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.272 kcal (2) G-P(sol) polarization free energy of solvation -80.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds