Wall clock time and date at job start Tue Mar 31 2020 15:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99926 * 2 1 4 4 H 1.48502 * 109.47315 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47370 * 30.00335 * 3 2 1 6 6 H 1.48503 * 109.47199 * 149.99918 * 3 2 1 7 7 C 1.38817 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00232 * 191.74977 * 7 2 1 9 9 N 1.36941 * 119.99366 * 11.74385 * 7 2 1 10 10 C 1.43468 * 118.93586 * 206.82170 * 9 7 2 11 11 C 1.53385 * 107.85734 * 273.58611 * 10 9 7 12 12 C 1.47141 * 112.04919 * 281.54312 * 11 10 9 13 13 N 1.48213 * 110.20105 * 58.39114 * 12 11 10 14 14 C 1.34777 * 119.96505 * 102.58645 * 13 12 11 15 15 O 1.21507 * 120.00175 * 0.57203 * 14 13 12 16 16 C 1.48235 * 119.99865 * 180.57026 * 14 13 12 17 17 C 1.40570 * 119.74992 * 186.05340 * 16 14 13 18 18 N 1.31263 * 120.57205 * 179.97438 * 17 16 14 19 19 C 1.33781 * 119.80719 * 359.97438 * 18 17 16 20 20 C 1.40539 * 121.00290 * 180.02562 * 19 18 17 21 21 C 1.36083 * 119.75215 * 179.97438 * 20 19 18 22 22 C 1.39475 * 121.01527 * 0.02562 * 21 20 19 23 23 C 1.35991 * 120.98540 * 359.97438 * 22 21 20 24 24 C 1.40825 * 119.69223 * 359.97438 * 23 22 21 25 25 N 1.32174 * 119.74745 * 5.77571 * 16 14 13 26 26 C 1.43620 * 120.06669 * 282.60826 * 13 12 11 27 27 C 1.48855 * 118.94044 * 26.80143 * 9 7 2 28 28 H 0.96996 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.76381 * 33.22440 * 10 9 7 30 30 H 1.08999 * 109.76001 * 153.94225 * 10 9 7 31 31 H 1.08996 * 108.75585 * 160.97295 * 11 10 9 32 32 H 1.08997 * 109.05252 * 42.30841 * 11 10 9 33 33 H 1.09006 * 109.32466 * 298.21291 * 12 11 10 34 34 H 1.08995 * 109.32602 * 178.57618 * 12 11 10 35 35 H 1.08002 * 119.71491 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.12378 * 359.96419 * 20 19 18 37 37 H 1.07999 * 119.48862 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.50710 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.14864 * 180.02562 * 23 22 21 40 40 H 1.08996 * 108.87952 * 211.42296 * 26 13 12 41 41 H 1.09004 * 108.86802 * 329.86002 * 26 13 12 42 42 H 1.08997 * 109.48017 * 20.66057 * 27 9 7 43 43 H 1.09004 * 109.48655 * 260.62760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0733 -1.2120 0.1899 9 7 1.3472 -2.3755 -0.2425 10 6 1.8713 -3.5944 0.3033 11 6 2.9048 -4.1468 -0.6864 12 6 2.2695 -4.8246 -1.8275 13 7 1.3682 -3.8892 -2.5413 14 6 1.7623 -3.3281 -3.7016 15 8 2.8518 -3.5972 -4.1673 16 6 0.8665 -2.3828 -4.4096 17 6 1.2262 -1.8995 -5.6796 18 7 0.4449 -1.0622 -6.3212 19 6 -0.7043 -0.6646 -5.7635 20 6 -1.5599 0.2305 -6.4281 21 6 -2.7231 0.6177 -5.8373 22 6 -3.0828 0.1400 -4.5773 23 6 -2.2818 -0.7272 -3.9023 24 6 -1.0703 -1.1523 -4.4810 25 7 -0.2669 -2.0050 -3.8442 26 6 0.0754 -3.5798 -1.9974 27 6 0.1054 -2.3452 -1.0628 28 1 -0.4850 0.8400 0.0004 29 1 2.3484 -3.3936 1.2625 30 1 1.0647 -4.3153 0.4367 31 1 3.5458 -4.8568 -0.1639 32 1 3.5166 -3.3247 -1.0577 33 1 1.6928 -5.6759 -1.4659 34 1 3.0405 -5.1763 -2.5130 35 1 2.1533 -2.2198 -6.1315 36 1 -1.2952 0.6098 -7.4040 37 1 -3.3776 1.3054 -6.3521 38 1 -4.0115 0.4637 -4.1309 39 1 -2.5738 -1.0889 -2.9275 40 1 -0.6148 -3.3842 -2.8180 41 1 -0.2850 -4.4402 -1.4336 42 1 0.0880 -1.4350 -1.6622 43 1 -0.7646 -2.3650 -0.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:45 Heat of formation + Delta-G solvation = 93.935066 kcal Electronic energy + Delta-G solvation = -28918.650439 eV Core-core repulsion = 25159.067706 eV Total energy + Delta-G solvation = -3759.582733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47702 -39.59322 -37.41520 -36.85205 -35.01101 -34.14211 -32.58190 -30.95295 -30.66913 -30.48044 -27.61670 -26.01691 -25.20834 -24.32785 -23.62207 -22.33954 -22.03801 -19.73207 -19.60657 -18.27570 -18.16866 -16.99411 -16.41934 -15.98493 -15.74205 -15.35539 -14.98117 -14.70806 -14.33326 -14.23313 -14.07598 -13.71233 -13.60693 -13.33468 -12.96981 -12.53747 -12.26586 -12.14372 -11.90316 -11.81870 -11.74114 -11.61184 -11.38930 -11.04235 -10.81098 -10.68012 -10.53307 -10.18811 -10.11360 -9.95629 -9.70401 -9.62663 -8.92672 -8.72152 -8.55447 -8.40810 -8.01565 -6.62803 -5.75925 -3.18851 0.13140 0.50427 1.92854 2.56111 3.22647 3.36781 3.43463 3.44610 3.45413 4.00341 4.14946 4.17849 4.32848 4.51416 4.75786 4.85596 4.97643 5.14492 5.25552 5.34142 5.39834 5.53634 5.57896 5.72782 5.81827 5.85650 5.89320 5.95219 6.06736 6.17273 6.23982 6.31247 6.34591 6.48012 6.56178 6.61141 6.72865 6.84547 6.93952 7.09350 7.25793 7.50514 7.63980 7.73721 7.83946 7.96815 8.47781 8.51310 9.25672 9.93001 10.38500 11.30951 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.006287 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.505950 B = 4452.287917 C = 5838.173812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.895 3.105 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.062 0.938 9 N -0.593 5.593 10 C 0.161 3.839 11 C -0.170 4.170 12 C 0.127 3.873 13 N -0.556 5.556 14 C 0.574 3.426 15 O -0.547 6.547 16 C 0.062 3.938 17 C 0.127 3.873 18 N -0.433 5.433 19 C 0.090 3.910 20 C -0.096 4.096 21 C -0.090 4.090 22 C -0.111 4.111 23 C -0.059 4.059 24 C 0.073 3.927 25 N -0.361 5.361 26 C 0.064 3.936 27 C 0.174 3.826 28 H 0.251 0.749 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.183 0.817 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -4.765 -9.643 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.726 3.274 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.033 3.967 11 C -0.211 4.211 12 C 0.006 3.994 13 N -0.285 5.285 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.093 4.093 17 C -0.048 4.048 18 N -0.147 5.147 19 C -0.035 4.035 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.131 4.131 23 C -0.078 4.078 24 C -0.053 4.053 25 N -0.079 5.079 26 C -0.061 4.061 27 C 0.048 3.952 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.200 0.800 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.461 -4.697 -9.853 12.684 hybrid contribution 0.544 1.127 0.232 1.273 sum -5.917 -3.570 -9.621 11.845 Atomic orbital electron populations 1.69993 1.04942 1.25039 1.54915 1.24979 0.95362 0.97966 1.00946 0.86391 0.79280 0.84157 0.77600 1.21771 1.21662 1.20428 1.19167 0.91267 0.84610 1.42881 0.92024 1.43762 1.28103 1.02647 1.56967 1.20222 0.93791 0.88763 0.93950 1.21797 1.00790 1.00616 0.97929 1.20673 0.93448 0.90807 0.94450 1.47327 1.17955 1.43070 1.20154 1.17583 0.85247 0.80029 0.81220 1.90722 1.21344 1.62706 1.67813 1.22479 0.93642 0.98708 0.94489 1.23875 0.98891 0.90907 0.91143 1.68780 1.02790 1.09589 1.33519 1.19775 0.93260 0.97412 0.93017 1.20735 0.93510 0.96800 1.00452 1.21041 0.96173 0.98594 0.95202 1.20997 1.00307 0.97035 0.94783 1.21008 0.90977 0.95751 1.00080 1.19832 0.96462 0.96419 0.92572 1.69254 1.02013 1.06712 1.29935 1.22875 0.83511 0.99757 0.99921 1.21855 0.87693 0.95039 0.90582 0.93886 0.93655 0.94847 0.92492 0.91304 0.91711 0.90207 0.80011 0.84502 0.84902 0.84668 0.83470 0.87663 0.93283 0.89358 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 10.85 55.49 0.60 -24.77 16 2 C 0.01 0.16 5.01 -17.43 -0.09 0.07 16 3 Si 0.90 22.33 29.57 -169.99 -5.03 17.31 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.82 9.26 -15.06 -0.14 -6.96 16 8 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 9 N -0.59 -14.44 2.53 -172.25 -0.44 -14.88 16 10 C 0.16 3.29 5.63 -5.45 -0.03 3.26 16 11 C -0.17 -3.08 5.60 -29.35 -0.16 -3.25 16 12 C 0.13 2.13 5.72 -5.91 -0.03 2.10 16 13 N -0.56 -10.44 2.45 -177.63 -0.44 -10.87 16 14 C 0.57 11.30 7.66 -12.15 -0.09 11.20 16 15 O -0.55 -11.44 15.77 5.36 0.08 -11.35 16 16 C 0.06 1.16 6.61 -82.73 -0.55 0.61 16 17 C 0.13 2.12 10.75 -16.92 -0.18 1.94 16 18 N -0.43 -7.14 10.45 -10.53 -0.11 -7.25 16 19 C 0.09 1.43 6.59 -84.71 -0.56 0.87 16 20 C -0.10 -1.19 9.98 -39.49 -0.39 -1.58 16 21 C -0.09 -0.92 9.95 -39.89 -0.40 -1.32 16 22 C -0.11 -1.23 9.95 -39.93 -0.40 -1.63 16 23 C -0.06 -0.84 9.99 -39.41 -0.39 -1.23 16 24 C 0.07 1.22 6.59 -84.79 -0.56 0.66 16 25 N -0.36 -6.62 4.58 -7.39 -0.03 -6.65 16 26 C 0.06 1.20 4.77 -4.58 -0.02 1.17 16 27 C 0.17 3.97 4.89 -1.75 -0.01 3.96 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 30 H 0.03 0.63 7.59 -51.93 -0.39 0.23 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 33 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.08 1.32 7.11 -51.93 -0.37 0.95 16 35 H 0.18 2.68 7.64 -52.49 -0.40 2.28 16 36 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.11 1.88 4.94 -57.96 -0.29 1.59 16 41 H 0.05 0.82 7.73 -51.93 -0.40 0.42 16 42 H 0.09 2.25 5.15 -51.93 -0.27 1.98 16 43 H 0.04 0.87 7.98 -51.93 -0.41 0.46 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -31.95 345.13 -9.60 -41.55 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.44 Total: 1.85 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -4.01 Total: 9.87 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.41 Total: -64.43 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.95 -9.60 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.483 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds