Wall clock time and date at job start Tue Mar 31 2020 15:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99926 * 2 1 4 4 H 1.48502 * 109.47315 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47370 * 30.00335 * 3 2 1 6 6 H 1.48503 * 109.47199 * 149.99918 * 3 2 1 7 7 C 1.38817 * 120.00511 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00232 * 191.74977 * 7 2 1 9 9 N 1.36941 * 119.99366 * 11.74385 * 7 2 1 10 10 C 1.43468 * 118.93586 * 206.82170 * 9 7 2 11 11 C 1.53385 * 107.85734 * 273.58611 * 10 9 7 12 12 C 1.47141 * 112.04919 * 281.54312 * 11 10 9 13 13 N 1.48213 * 110.20105 * 58.39114 * 12 11 10 14 14 C 1.34777 * 119.96505 * 102.58645 * 13 12 11 15 15 O 1.21507 * 120.00175 * 0.57203 * 14 13 12 16 16 C 1.48235 * 119.99865 * 180.57026 * 14 13 12 17 17 C 1.40570 * 119.74992 * 186.05340 * 16 14 13 18 18 N 1.31263 * 120.57205 * 179.97438 * 17 16 14 19 19 C 1.33781 * 119.80719 * 359.97438 * 18 17 16 20 20 C 1.40539 * 121.00290 * 180.02562 * 19 18 17 21 21 C 1.36083 * 119.75215 * 179.97438 * 20 19 18 22 22 C 1.39475 * 121.01527 * 0.02562 * 21 20 19 23 23 C 1.35991 * 120.98540 * 359.97438 * 22 21 20 24 24 C 1.40825 * 119.69223 * 359.97438 * 23 22 21 25 25 N 1.32174 * 119.74745 * 5.77571 * 16 14 13 26 26 C 1.43620 * 120.06669 * 282.60826 * 13 12 11 27 27 C 1.48855 * 118.94044 * 26.80143 * 9 7 2 28 28 H 0.96996 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.76381 * 33.22440 * 10 9 7 30 30 H 1.08999 * 109.76001 * 153.94225 * 10 9 7 31 31 H 1.08996 * 108.75585 * 160.97295 * 11 10 9 32 32 H 1.08997 * 109.05252 * 42.30841 * 11 10 9 33 33 H 1.09006 * 109.32466 * 298.21291 * 12 11 10 34 34 H 1.08995 * 109.32602 * 178.57618 * 12 11 10 35 35 H 1.08002 * 119.71491 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.12378 * 359.96419 * 20 19 18 37 37 H 1.07999 * 119.48862 * 180.02562 * 21 20 19 38 38 H 1.08005 * 119.50710 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.14864 * 180.02562 * 23 22 21 40 40 H 1.08996 * 108.87952 * 211.42296 * 26 13 12 41 41 H 1.09004 * 108.86802 * 329.86002 * 26 13 12 42 42 H 1.08997 * 109.48017 * 20.66057 * 27 9 7 43 43 H 1.09004 * 109.48655 * 260.62760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0733 -1.2120 0.1899 9 7 1.3472 -2.3755 -0.2425 10 6 1.8713 -3.5944 0.3033 11 6 2.9048 -4.1468 -0.6864 12 6 2.2695 -4.8246 -1.8275 13 7 1.3682 -3.8892 -2.5413 14 6 1.7623 -3.3281 -3.7016 15 8 2.8518 -3.5972 -4.1673 16 6 0.8665 -2.3828 -4.4096 17 6 1.2262 -1.8995 -5.6796 18 7 0.4449 -1.0622 -6.3212 19 6 -0.7043 -0.6646 -5.7635 20 6 -1.5599 0.2305 -6.4281 21 6 -2.7231 0.6177 -5.8373 22 6 -3.0828 0.1400 -4.5773 23 6 -2.2818 -0.7272 -3.9023 24 6 -1.0703 -1.1523 -4.4810 25 7 -0.2669 -2.0050 -3.8442 26 6 0.0754 -3.5798 -1.9974 27 6 0.1054 -2.3452 -1.0628 28 1 -0.4850 0.8400 0.0004 29 1 2.3484 -3.3936 1.2625 30 1 1.0647 -4.3153 0.4367 31 1 3.5458 -4.8568 -0.1639 32 1 3.5166 -3.3247 -1.0577 33 1 1.6928 -5.6759 -1.4659 34 1 3.0405 -5.1763 -2.5130 35 1 2.1533 -2.2198 -6.1315 36 1 -1.2952 0.6098 -7.4040 37 1 -3.3776 1.3054 -6.3521 38 1 -4.0115 0.4637 -4.1309 39 1 -2.5738 -1.0889 -2.9275 40 1 -0.6148 -3.3842 -2.8180 41 1 -0.2850 -4.4402 -1.4336 42 1 0.0880 -1.4350 -1.6622 43 1 -0.7646 -2.3650 -0.4064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981338839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:44 Heat of formation + Delta-G solvation = 74.869734 kcal Electronic energy + Delta-G solvation = -28919.477174 eV Core-core repulsion = 25159.067706 eV Total energy + Delta-G solvation = -3760.409468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70727 -41.01618 -38.78251 -38.21270 -36.36801 -35.79253 -34.16159 -32.73527 -31.93514 -31.56361 -29.30399 -27.53794 -26.57623 -25.67014 -25.37462 -23.69902 -23.22069 -21.49538 -20.93571 -19.46918 -19.43999 -18.67125 -17.99039 -17.49367 -17.12909 -16.74238 -16.47240 -15.99533 -15.81159 -15.59608 -15.46623 -15.31806 -14.94285 -14.74778 -14.51353 -14.04663 -13.95024 -13.70599 -13.18604 -12.96853 -12.91305 -12.88448 -12.83761 -12.69501 -12.63036 -12.43641 -12.16563 -12.01710 -11.70923 -11.49154 -11.45458 -11.35098 -10.50450 -10.08470 -10.00089 -9.59770 -9.53305 -8.59929 -7.83798 -5.28576 -1.05002 -0.65676 0.79333 1.33806 1.34987 1.37745 1.44166 1.87235 2.14572 2.46430 2.75681 2.96999 3.00349 3.15002 3.28634 3.52429 3.73972 3.83466 3.95536 4.10606 4.15027 4.24919 4.27413 4.34875 4.38161 4.54919 4.66396 4.78106 4.81406 4.89529 4.91569 5.00773 5.06431 5.15679 5.23242 5.27264 5.35864 5.38491 5.49801 5.61607 5.71304 5.80719 5.89754 6.03773 6.35271 6.43975 6.52681 7.01001 7.20647 7.98924 8.36978 9.19137 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.006287 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.505950 B = 4452.287917 C = 5838.173812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.038 4.038 3 Si 0.943 3.057 4 H -0.301 1.301 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.256 4.256 8 H 0.049 0.951 9 N -0.608 5.608 10 C 0.156 3.844 11 C -0.155 4.155 12 C 0.123 3.877 13 N -0.560 5.560 14 C 0.568 3.432 15 O -0.568 6.568 16 C 0.035 3.965 17 C 0.117 3.883 18 N -0.437 5.437 19 C 0.074 3.926 20 C -0.106 4.106 21 C -0.067 4.067 22 C -0.090 4.090 23 C -0.087 4.087 24 C 0.050 3.950 25 N -0.375 5.375 26 C 0.078 3.922 27 C 0.185 3.815 28 H 0.247 0.753 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.193 0.807 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -4.557 -10.604 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.235 4.235 3 Si 0.773 3.227 4 H -0.229 1.229 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.388 4.388 8 H 0.067 0.933 9 N -0.331 5.331 10 C 0.029 3.971 11 C -0.196 4.196 12 C 0.003 3.997 13 N -0.288 5.288 14 C 0.354 3.646 15 O -0.448 6.448 16 C -0.119 4.119 17 C -0.057 4.057 18 N -0.151 5.151 19 C -0.052 4.052 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.109 4.109 23 C -0.106 4.106 24 C -0.077 4.077 25 N -0.093 5.093 26 C -0.047 4.047 27 C 0.060 3.940 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.210 0.790 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.190 0.810 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -8.162 -4.532 -10.797 14.273 hybrid contribution 0.936 1.154 0.499 1.567 sum -7.226 -3.378 -10.298 13.026 Atomic orbital electron populations 1.70113 1.05515 1.25051 1.55870 1.25505 0.96148 1.00096 1.01706 0.85628 0.78646 0.81599 0.76778 1.22892 1.21208 1.19883 1.19290 0.90984 0.86189 1.42296 0.93289 1.43984 1.28271 1.03006 1.57827 1.20397 0.94826 0.87871 0.93990 1.21603 0.99987 0.99988 0.97982 1.20867 0.93878 0.91224 0.93750 1.47458 1.18211 1.43156 1.20023 1.17865 0.85184 0.79985 0.81535 1.90684 1.22138 1.63521 1.68476 1.22407 0.94284 0.99862 0.95377 1.23977 0.99506 0.91357 0.90869 1.68805 1.03188 1.09524 1.33545 1.20279 0.93602 0.98138 0.93143 1.21113 0.93748 0.96208 1.01415 1.21606 0.95379 0.97334 0.94345 1.21510 1.00485 0.94353 0.94596 1.21140 0.91149 0.97743 1.00567 1.20238 0.97237 0.96840 0.93387 1.69097 1.02263 1.07485 1.30495 1.22611 0.83914 0.98581 0.99572 1.21576 0.86252 0.95973 0.90233 0.94326 0.94511 0.92599 0.88999 0.95385 0.88043 0.89931 0.78999 0.82353 0.80073 0.80955 0.84257 0.86915 0.90813 0.92227 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.84 10.85 21.65 0.23 -52.61 16 2 C -0.04 -2.18 5.01 84.86 0.42 -1.75 16 3 Si 0.94 46.84 29.57 68.60 2.03 48.87 16 4 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.26 -14.43 9.26 84.03 0.78 -13.65 16 8 H 0.05 2.82 7.86 -2.91 -0.02 2.80 16 9 N -0.61 -30.12 2.53 -698.89 -1.77 -31.89 16 10 C 0.16 6.29 5.63 87.07 0.49 6.78 16 11 C -0.15 -5.47 5.60 28.90 0.16 -5.30 16 12 C 0.12 3.94 5.72 84.23 0.48 4.42 16 13 N -0.56 -20.96 2.45 -834.18 -2.05 -23.01 16 14 C 0.57 22.94 7.66 86.90 0.67 23.61 16 15 O -0.57 -24.36 15.77 -3.74 -0.06 -24.42 16 16 C 0.04 1.35 6.61 42.32 0.28 1.63 16 17 C 0.12 4.07 10.75 85.35 0.92 4.99 16 18 N -0.44 -14.51 10.45 -187.23 -1.96 -16.47 16 19 C 0.07 2.30 6.59 40.34 0.27 2.56 16 20 C -0.11 -2.34 9.98 22.33 0.22 -2.12 16 21 C -0.07 -1.08 9.95 22.07 0.22 -0.86 16 22 C -0.09 -1.69 9.95 22.05 0.22 -1.47 16 23 C -0.09 -2.41 9.99 22.38 0.22 -2.18 16 24 C 0.05 1.68 6.59 40.48 0.27 1.94 16 25 N -0.37 -14.23 4.58 -177.28 -0.81 -15.04 16 26 C 0.08 2.89 4.77 87.55 0.42 3.31 16 27 C 0.18 8.64 4.89 86.56 0.42 9.06 16 28 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 30 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.03 1.21 7.90 -2.39 -0.02 1.19 16 33 H 0.10 2.53 8.06 -2.38 -0.02 2.51 16 34 H 0.08 2.63 7.11 -2.39 -0.02 2.62 16 35 H 0.19 5.94 7.64 -2.91 -0.02 5.92 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.11 4.08 4.94 -14.29 -0.07 4.01 16 41 H 0.07 2.35 7.73 -2.38 -0.02 2.33 16 42 H 0.06 3.14 5.15 -2.39 -0.01 3.13 16 43 H 0.01 0.64 7.98 -2.38 -0.02 0.62 16 Total: -1.00 -72.75 345.13 3.06 -69.70 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.98 Total: 13.91 kcal Atomic # 6 Polarization: 24.50 SS G_CDS: 6.46 Total: 30.96 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -6.35 Total: -139.02 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.75 3.06 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.565 kcal (2) G-P(sol) polarization free energy of solvation -72.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds