Wall clock time and date at job start Tue Mar 31 2020 15:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99984 * 2 1 4 4 H 1.48499 * 109.46760 * 86.35750 * 3 2 1 5 5 H 1.48498 * 109.47031 * 326.36065 * 3 2 1 6 6 H 1.48496 * 109.47081 * 206.35993 * 3 2 1 7 7 C 1.38808 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99928 * 22.90824 * 7 2 1 9 9 N 1.36933 * 120.00421 * 202.90514 * 7 2 1 10 10 C 1.43463 * 118.94667 * 205.18739 * 9 7 2 11 11 C 1.53797 * 107.95737 * 273.61216 * 10 9 7 12 12 C 1.47142 * 111.84395 * 281.66538 * 11 10 9 13 13 N 1.48210 * 110.34192 * 58.29322 * 12 11 10 14 14 C 1.34775 * 119.96886 * 102.47354 * 13 12 11 15 15 O 1.21550 * 119.99936 * 5.90454 * 14 13 12 16 16 C 1.47914 * 120.00128 * 185.90153 * 14 13 12 17 17 C 1.38945 * 119.84603 * 186.06224 * 16 14 13 18 18 C 1.40644 * 117.38405 * 179.74995 * 17 16 14 19 19 C 1.40264 * 122.03256 * 180.22396 * 18 17 16 20 20 C 1.36264 * 119.47304 * 180.30292 * 19 18 17 21 21 C 1.39319 * 120.87552 * 359.97438 * 20 19 18 22 22 C 1.36232 * 121.15794 * 0.02562 * 21 20 19 23 23 C 1.40329 * 119.68064 * 359.97438 * 22 21 20 24 24 N 1.33822 * 121.62479 * 179.97438 * 23 22 21 25 25 N 1.28436 * 121.68614 * 180.02562 * 24 23 22 26 26 C 1.43617 * 120.06321 * 282.49454 * 13 12 11 27 27 C 1.48863 * 118.93584 * 24.91621 * 9 7 2 28 28 H 0.97000 * 119.99668 * 185.10176 * 1 2 3 29 29 H 1.09003 * 109.76023 * 33.22243 * 10 9 7 30 30 H 1.08996 * 109.76854 * 153.94437 * 10 9 7 31 31 H 1.09002 * 109.00994 * 42.27051 * 11 10 9 32 32 H 1.09003 * 109.00854 * 161.05002 * 11 10 9 33 33 H 1.08997 * 109.32558 * 178.56904 * 12 11 10 34 34 H 1.09001 * 109.31942 * 298.20606 * 12 11 10 35 35 H 1.07999 * 121.30344 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.25964 * 0.31727 * 19 18 17 37 37 H 1.08000 * 119.56030 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.42218 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.15774 * 179.97438 * 22 21 20 40 40 H 1.08999 * 108.87993 * 211.44713 * 26 13 12 41 41 H 1.09002 * 108.87409 * 329.88647 * 26 13 12 42 42 H 1.08998 * 109.48037 * 260.62449 * 27 9 7 43 43 H 1.08998 * 109.48285 * 20.65965 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4206 2.0909 1.3973 5 1 1.4882 2.6293 -0.7756 6 1 3.5841 1.4192 -0.6216 7 6 2.0103 -1.2021 0.0005 8 1 1.5342 -2.1007 -0.3632 9 7 3.2986 -1.2486 0.4621 10 6 4.1708 -2.2822 -0.0167 11 6 3.9668 -3.5228 0.8691 12 6 4.6678 -3.3974 2.1568 13 7 4.1954 -2.1965 2.8857 14 6 3.3277 -2.3277 3.9085 15 8 3.0157 -3.4344 4.3026 16 6 2.7550 -1.1251 4.5516 17 6 1.9611 -1.2582 5.6841 18 6 1.4479 -0.0804 6.2564 19 6 0.6399 -0.1011 7.4027 20 6 0.1655 1.0713 7.9098 21 6 0.4731 2.2882 7.3053 22 6 1.2551 2.3441 6.1911 23 6 1.7629 1.1583 5.6385 24 7 2.5342 1.1679 4.5450 25 7 2.9992 0.0833 4.0379 26 6 4.6612 -0.8930 2.5028 27 6 3.7510 -0.2214 1.4399 28 1 -0.4850 -0.8367 0.0747 29 1 3.9239 -2.5231 -1.0507 30 1 5.2067 -1.9493 0.0470 31 1 2.9010 -3.6539 1.0566 32 1 4.3438 -4.4002 0.3436 33 1 4.4754 -4.2846 2.7601 34 1 5.7392 -3.3089 1.9769 35 1 1.7495 -2.2277 6.1102 36 1 0.3958 -1.0388 7.8796 37 1 -0.4565 1.0570 8.7926 38 1 0.0849 3.2034 7.7273 39 1 1.4830 3.2963 5.7354 40 1 4.6983 -0.2577 3.3878 41 1 5.6676 -0.9841 2.0942 42 1 4.3086 0.5564 0.9182 43 1 2.8837 0.2201 1.9308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981725122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:09 Heat of formation + Delta-G solvation = 103.919319 kcal Electronic energy + Delta-G solvation = -28772.862708 eV Core-core repulsion = 25013.712924 eV Total energy + Delta-G solvation = -3759.149784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.42955 -39.75633 -37.76283 -37.20521 -34.39010 -33.73859 -32.96187 -31.53006 -31.22133 -30.49268 -27.68596 -26.09511 -25.29984 -24.77441 -23.05454 -22.59541 -22.32240 -19.93297 -19.65628 -18.71881 -18.08172 -17.11592 -16.73698 -16.13668 -15.96456 -15.38589 -14.98036 -14.91496 -14.72902 -14.45070 -13.93071 -13.80443 -13.62543 -13.28833 -13.19931 -12.91722 -12.46449 -12.41329 -12.23558 -12.12249 -11.96510 -11.49387 -11.43762 -10.85081 -10.79366 -10.75771 -10.37253 -10.20083 -9.85183 -9.68578 -9.60766 -9.53324 -9.33465 -9.04832 -8.53082 -8.41561 -8.13750 -6.84197 -6.22208 -3.18715 -0.10876 0.37739 1.62057 2.39099 3.10709 3.33930 3.60739 3.64374 3.78179 3.89408 3.95768 4.23362 4.40989 4.44311 4.61515 4.73092 4.84503 4.88530 4.98042 5.12902 5.32570 5.41620 5.52129 5.54185 5.55664 5.58983 5.68542 5.70749 5.84331 5.98180 6.01321 6.06284 6.08739 6.11589 6.31271 6.38018 6.40632 6.50496 6.59692 6.74969 6.85923 6.98885 7.15068 7.72275 8.15631 8.32100 8.57310 8.63243 9.14624 9.78887 10.26050 11.22297 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.005737 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.156543 B = 4879.486093 C = 6251.200828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 1.044 2.956 4 H -0.280 1.280 5 H -0.304 1.304 6 H -0.287 1.287 7 C -0.346 4.346 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.161 3.839 11 C -0.170 4.170 12 C 0.128 3.872 13 N -0.563 5.563 14 C 0.581 3.419 15 O -0.547 6.547 16 C 0.001 3.999 17 C -0.033 4.033 18 C -0.075 4.075 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.097 4.097 22 C -0.075 4.075 23 C 0.073 3.927 24 N -0.202 5.202 25 N -0.171 5.171 26 C 0.092 3.908 27 C 0.108 3.892 28 H 0.261 0.739 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 1.232 16.248 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.875 3.125 4 H -0.207 1.207 5 H -0.233 1.233 6 H -0.213 1.213 7 C -0.474 4.474 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.033 3.967 11 C -0.211 4.211 12 C 0.007 3.993 13 N -0.292 5.292 14 C 0.367 3.633 15 O -0.425 6.425 16 C -0.132 4.132 17 C -0.063 4.063 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.096 4.096 23 C -0.054 4.054 24 N -0.057 5.057 25 N -0.029 5.029 26 C -0.034 4.034 27 C -0.017 4.017 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.181 0.819 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.829 3.052 15.206 16.946 hybrid contribution -0.723 -2.453 0.914 2.716 sum 6.106 0.599 16.120 17.248 Atomic orbital electron populations 1.70861 1.06477 1.29282 1.49333 1.26106 0.96315 1.00927 0.97624 0.84148 0.74678 0.76753 0.76959 1.20710 1.23258 1.21316 1.20187 0.88619 0.95827 1.42791 0.91877 1.44026 1.10471 1.31345 1.46601 1.20317 0.92914 0.87974 0.95491 1.21844 1.02159 1.00611 0.96489 1.20690 0.97604 0.87435 0.93554 1.47233 1.43221 1.08402 1.30313 1.17447 0.78941 0.86714 0.80228 1.90727 1.61227 1.25548 1.64969 1.22548 1.00023 0.94851 0.95776 1.22496 0.91339 0.99449 0.93016 1.18793 0.98958 0.93285 0.97294 1.21000 0.96435 0.99534 0.94385 1.21066 0.98864 0.92188 0.99918 1.21057 0.96942 0.98564 0.95222 1.20844 0.96264 0.97153 0.95376 1.20469 0.96890 0.93893 0.94185 1.74001 1.05989 1.19648 1.06105 1.73774 1.13409 0.94889 1.20799 1.22238 0.97212 0.83447 1.00525 1.22703 0.98669 0.91259 0.89118 0.92943 0.93151 0.94644 0.91285 0.92222 0.90032 0.91492 0.81930 0.84396 0.84865 0.84619 0.83679 0.88598 0.91994 0.94683 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.65 13.70 55.49 0.76 -28.89 16 2 C -0.01 -0.26 5.14 -17.43 -0.09 -0.35 16 3 Si 1.04 27.42 24.43 -169.99 -4.15 23.26 16 4 H -0.28 -7.09 6.74 56.52 0.38 -6.70 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.29 -7.11 6.47 56.52 0.37 -6.74 16 7 C -0.35 -10.03 9.54 -15.06 -0.14 -10.17 16 8 H 0.06 1.98 8.06 -52.48 -0.42 1.55 16 9 N -0.60 -14.75 2.32 -171.77 -0.40 -15.15 16 10 C 0.16 3.28 5.63 -5.23 -0.03 3.25 16 11 C -0.17 -3.12 5.64 -29.13 -0.16 -3.28 16 12 C 0.13 2.14 5.73 -5.91 -0.03 2.10 16 13 N -0.56 -10.60 2.46 -177.52 -0.44 -11.04 16 14 C 0.58 11.58 7.63 -12.30 -0.09 11.49 16 15 O -0.55 -11.50 15.80 5.32 0.08 -11.42 16 16 C 0.00 0.01 6.60 -82.89 -0.55 -0.53 16 17 C -0.03 -0.51 9.51 -38.41 -0.37 -0.88 16 18 C -0.07 -1.07 5.75 -106.80 -0.61 -1.68 16 19 C -0.09 -0.98 9.81 -39.53 -0.39 -1.37 16 20 C -0.10 -0.86 9.96 -39.89 -0.40 -1.26 16 21 C -0.10 -0.88 9.94 -39.90 -0.40 -1.27 16 22 C -0.08 -0.91 10.00 -39.52 -0.40 -1.30 16 23 C 0.07 1.15 6.69 -84.79 -0.57 0.58 16 24 N -0.20 -3.81 11.55 32.23 0.37 -3.43 16 25 N -0.17 -3.38 5.28 33.24 0.18 -3.21 16 26 C 0.09 1.68 4.75 -4.39 -0.02 1.66 16 27 C 0.11 2.45 4.19 -1.56 -0.01 2.44 16 28 H 0.26 8.41 8.73 -40.82 -0.36 8.06 16 29 H 0.05 1.05 8.02 -51.93 -0.42 0.63 16 30 H 0.04 0.64 7.59 -51.93 -0.39 0.24 16 31 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.35 7.08 -51.93 -0.37 0.99 16 34 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.16 2.20 7.70 -52.49 -0.40 1.79 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 40 H 0.10 1.70 5.39 -51.93 -0.28 1.42 16 41 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 42 H 0.04 0.79 5.83 -51.93 -0.30 0.49 16 43 H 0.09 2.31 3.59 -51.93 -0.19 2.12 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -36.04 338.39 -8.08 -44.12 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.33 Total: 1.22 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.25 Total: -0.57 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.47 Total: -61.72 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.15 Total: 23.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.04 -8.08 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981725122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.040 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds