Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99984 * 2 1 4 4 H 1.48499 * 109.46760 * 86.35750 * 3 2 1 5 5 H 1.48498 * 109.47031 * 326.36065 * 3 2 1 6 6 H 1.48496 * 109.47081 * 206.35993 * 3 2 1 7 7 C 1.38808 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99928 * 22.90824 * 7 2 1 9 9 N 1.36933 * 120.00421 * 202.90514 * 7 2 1 10 10 C 1.43463 * 118.94667 * 205.18739 * 9 7 2 11 11 C 1.53797 * 107.95737 * 273.61216 * 10 9 7 12 12 C 1.47142 * 111.84395 * 281.66538 * 11 10 9 13 13 N 1.48210 * 110.34192 * 58.29322 * 12 11 10 14 14 C 1.34775 * 119.96886 * 102.47354 * 13 12 11 15 15 O 1.21550 * 119.99936 * 5.90454 * 14 13 12 16 16 C 1.47914 * 120.00128 * 185.90153 * 14 13 12 17 17 C 1.38945 * 119.84603 * 186.06224 * 16 14 13 18 18 C 1.40644 * 117.38405 * 179.74995 * 17 16 14 19 19 C 1.40264 * 122.03256 * 180.22396 * 18 17 16 20 20 C 1.36264 * 119.47304 * 180.30292 * 19 18 17 21 21 C 1.39319 * 120.87552 * 359.97438 * 20 19 18 22 22 C 1.36232 * 121.15794 * 0.02562 * 21 20 19 23 23 C 1.40329 * 119.68064 * 359.97438 * 22 21 20 24 24 N 1.33822 * 121.62479 * 179.97438 * 23 22 21 25 25 N 1.28436 * 121.68614 * 180.02562 * 24 23 22 26 26 C 1.43617 * 120.06321 * 282.49454 * 13 12 11 27 27 C 1.48863 * 118.93584 * 24.91621 * 9 7 2 28 28 H 0.97000 * 119.99668 * 185.10176 * 1 2 3 29 29 H 1.09003 * 109.76023 * 33.22243 * 10 9 7 30 30 H 1.08996 * 109.76854 * 153.94437 * 10 9 7 31 31 H 1.09002 * 109.00994 * 42.27051 * 11 10 9 32 32 H 1.09003 * 109.00854 * 161.05002 * 11 10 9 33 33 H 1.08997 * 109.32558 * 178.56904 * 12 11 10 34 34 H 1.09001 * 109.31942 * 298.20606 * 12 11 10 35 35 H 1.07999 * 121.30344 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.25964 * 0.31727 * 19 18 17 37 37 H 1.08000 * 119.56030 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.42218 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.15774 * 179.97438 * 22 21 20 40 40 H 1.08999 * 108.87993 * 211.44713 * 26 13 12 41 41 H 1.09002 * 108.87409 * 329.88647 * 26 13 12 42 42 H 1.08998 * 109.48037 * 260.62449 * 27 9 7 43 43 H 1.08998 * 109.48285 * 20.65965 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4206 2.0909 1.3973 5 1 1.4882 2.6293 -0.7756 6 1 3.5841 1.4192 -0.6216 7 6 2.0103 -1.2021 0.0005 8 1 1.5342 -2.1007 -0.3632 9 7 3.2986 -1.2486 0.4621 10 6 4.1708 -2.2822 -0.0167 11 6 3.9668 -3.5228 0.8691 12 6 4.6678 -3.3974 2.1568 13 7 4.1954 -2.1965 2.8857 14 6 3.3277 -2.3277 3.9085 15 8 3.0157 -3.4344 4.3026 16 6 2.7550 -1.1251 4.5516 17 6 1.9611 -1.2582 5.6841 18 6 1.4479 -0.0804 6.2564 19 6 0.6399 -0.1011 7.4027 20 6 0.1655 1.0713 7.9098 21 6 0.4731 2.2882 7.3053 22 6 1.2551 2.3441 6.1911 23 6 1.7629 1.1583 5.6385 24 7 2.5342 1.1679 4.5450 25 7 2.9992 0.0833 4.0379 26 6 4.6612 -0.8930 2.5028 27 6 3.7510 -0.2214 1.4399 28 1 -0.4850 -0.8367 0.0747 29 1 3.9239 -2.5231 -1.0507 30 1 5.2067 -1.9493 0.0470 31 1 2.9010 -3.6539 1.0566 32 1 4.3438 -4.4002 0.3436 33 1 4.4754 -4.2846 2.7601 34 1 5.7392 -3.3089 1.9769 35 1 1.7495 -2.2277 6.1102 36 1 0.3958 -1.0388 7.8796 37 1 -0.4565 1.0570 8.7926 38 1 0.0849 3.2034 7.7273 39 1 1.4830 3.2963 5.7354 40 1 4.6983 -0.2577 3.3878 41 1 5.6676 -0.9841 2.0942 42 1 4.3086 0.5564 0.9182 43 1 2.8837 0.2201 1.9308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981725122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = 78.810867 kcal Electronic energy + Delta-G solvation = -28773.951492 eV Core-core repulsion = 25013.712924 eV Total energy + Delta-G solvation = -3760.238568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60274 -41.12965 -38.90750 -38.74457 -36.16410 -34.92225 -34.44481 -33.44047 -32.50695 -31.50562 -29.36285 -27.69190 -26.44383 -26.04099 -24.94445 -23.93933 -23.40244 -21.69944 -21.03143 -19.79693 -19.65410 -18.89813 -18.03983 -17.50022 -17.17995 -16.80855 -16.64675 -16.31005 -15.76650 -15.65436 -15.53494 -15.32946 -15.03106 -14.84004 -14.52573 -14.49286 -14.03812 -13.76530 -13.58010 -13.41334 -13.24080 -13.00200 -12.77907 -12.57634 -12.08337 -11.99953 -11.94416 -11.89156 -11.57822 -11.51731 -11.28251 -11.07305 -10.79112 -10.64463 -10.39146 -9.73987 -9.42790 -8.93784 -8.58351 -5.48743 -1.16195 -0.73105 0.63576 1.21664 1.45189 1.55691 1.68449 1.80789 2.09847 2.56096 2.68894 2.82601 3.05851 3.20850 3.25502 3.41625 3.49355 3.71224 3.75149 4.00696 4.11092 4.12315 4.16497 4.20543 4.36328 4.41879 4.46042 4.50106 4.62232 4.65262 4.76985 4.89398 4.90212 4.94327 4.99302 5.07204 5.15121 5.17872 5.24049 5.30653 5.38508 5.62900 5.71376 5.78137 6.23316 6.28938 6.86699 6.92168 7.38995 7.72532 8.04744 8.83669 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.005737 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.156543 B = 4879.486093 C = 6251.200828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.065 4.065 3 Si 1.090 2.910 4 H -0.271 1.271 5 H -0.313 1.313 6 H -0.259 1.259 7 C -0.324 4.324 8 H 0.023 0.977 9 N -0.614 5.614 10 C 0.154 3.846 11 C -0.156 4.156 12 C 0.125 3.875 13 N -0.567 5.567 14 C 0.573 3.427 15 O -0.571 6.571 16 C -0.037 4.037 17 C -0.032 4.032 18 C -0.086 4.086 19 C -0.101 4.101 20 C -0.083 4.083 21 C -0.070 4.070 22 C -0.104 4.104 23 C 0.052 3.948 24 N -0.237 5.237 25 N -0.197 5.197 26 C 0.101 3.899 27 C 0.102 3.898 28 H 0.242 0.758 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.015 0.985 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 2.306 19.119 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.916 3.084 4 H -0.197 1.197 5 H -0.243 1.243 6 H -0.184 1.184 7 C -0.454 4.454 8 H 0.041 0.959 9 N -0.337 5.337 10 C 0.027 3.973 11 C -0.196 4.196 12 C 0.004 3.996 13 N -0.296 5.296 14 C 0.360 3.640 15 O -0.451 6.451 16 C -0.170 4.170 17 C -0.062 4.062 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.076 4.076 24 N -0.092 5.092 25 N -0.054 5.054 26 C -0.025 4.025 27 C -0.023 4.023 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.197 0.803 39 H 0.170 0.830 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.344 4.098 18.068 20.319 hybrid contribution -1.320 -2.799 0.221 3.102 sum 7.024 1.299 18.288 19.634 Atomic orbital electron populations 1.70980 1.07754 1.28081 1.53324 1.27228 0.96246 1.04344 0.98083 0.83554 0.74572 0.72874 0.77399 1.19741 1.24267 1.18391 1.20020 0.90604 0.94011 1.40784 0.95949 1.44134 1.09379 1.32721 1.47512 1.20556 0.94095 0.87481 0.95130 1.21674 0.99183 1.01119 0.97648 1.20880 0.99754 0.86860 0.92060 1.47411 1.42917 1.09155 1.30068 1.17784 0.78812 0.86899 0.80529 1.90682 1.62113 1.26391 1.65918 1.22534 1.02414 0.94456 0.97569 1.22747 0.90427 1.00805 0.92191 1.19109 0.99623 0.92124 0.98611 1.21413 0.95521 1.01966 0.93029 1.21680 0.97250 0.90927 1.00313 1.21643 0.93744 1.00693 0.92921 1.21114 0.97988 0.96268 0.97130 1.20953 0.96924 0.95919 0.93804 1.73819 1.07747 1.19643 1.07970 1.73595 1.14893 0.95216 1.21735 1.22125 0.97543 0.83165 0.99644 1.22730 0.98616 0.91283 0.89640 0.94899 0.94251 0.90667 0.96612 0.88721 0.90132 0.86984 0.80526 0.81537 0.80186 0.80348 0.83035 0.87951 0.88197 0.93819 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.11 13.70 21.65 0.30 -64.82 16 2 C -0.07 -4.08 5.14 84.86 0.44 -3.65 16 3 Si 1.09 57.02 24.43 68.60 1.68 58.70 16 4 H -0.27 -13.70 6.74 99.48 0.67 -13.03 16 5 H -0.31 -16.69 7.11 99.48 0.71 -15.99 16 6 H -0.26 -12.21 6.47 99.48 0.64 -11.57 16 7 C -0.32 -19.63 9.54 84.03 0.80 -18.83 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 9 N -0.61 -30.24 2.32 -697.37 -1.62 -31.86 16 10 C 0.15 6.07 5.63 87.21 0.49 6.56 16 11 C -0.16 -5.58 5.64 29.04 0.16 -5.42 16 12 C 0.12 3.92 5.73 84.23 0.48 4.40 16 13 N -0.57 -21.05 2.46 -833.83 -2.05 -23.10 16 14 C 0.57 23.44 7.63 86.81 0.66 24.10 16 15 O -0.57 -24.75 15.80 -3.87 -0.06 -24.81 16 16 C -0.04 -1.43 6.60 41.62 0.27 -1.16 16 17 C -0.03 -1.02 9.51 23.03 0.22 -0.80 16 18 C -0.09 -2.41 5.75 -21.28 -0.12 -2.53 16 19 C -0.10 -1.76 9.81 22.30 0.22 -1.55 16 20 C -0.08 -0.98 9.96 22.07 0.22 -0.76 16 21 C -0.07 -0.95 9.94 22.06 0.22 -0.73 16 22 C -0.10 -2.34 10.00 22.31 0.22 -2.11 16 23 C 0.05 1.63 6.69 40.27 0.27 1.90 16 24 N -0.24 -9.22 11.55 -51.93 -0.60 -9.82 16 25 N -0.20 -8.06 5.28 -48.75 -0.26 -8.32 16 26 C 0.10 3.56 4.75 87.68 0.42 3.98 16 27 C 0.10 4.58 4.19 86.69 0.36 4.94 16 28 H 0.24 16.77 8.73 -92.71 -0.81 15.96 16 29 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 30 H 0.08 2.41 7.59 -2.39 -0.02 2.39 16 31 H 0.01 0.71 7.91 -2.39 -0.02 0.69 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.58 7.08 -2.39 -0.02 2.57 16 34 H 0.11 2.57 8.05 -2.39 -0.02 2.55 16 35 H 0.18 4.86 7.70 -2.91 -0.02 4.84 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.10 3.59 5.39 -2.39 -0.01 3.58 16 41 H 0.10 2.75 7.73 -2.39 -0.02 2.73 16 42 H 0.04 1.88 5.83 -2.39 -0.01 1.87 16 43 H 0.06 3.25 3.59 -2.39 -0.01 3.24 16 Total: -1.00 -87.28 338.39 3.63 -83.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.91 Total: 12.03 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.34 Total: 8.34 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -4.23 Total: -137.91 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 57.02 SS G_CDS: 1.68 Total: 58.70 kcal Total: -87.28 3.63 -83.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981725122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.461 kcal (2) G-P(sol) polarization free energy of solvation -87.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds