Wall clock time and date at job start Tue Mar 31 2020 15:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47475 * 299.99880 * 3 2 1 6 6 H 1.48498 * 109.47390 * 60.00426 * 3 2 1 7 7 C 1.38812 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99394 * 177.76563 * 7 2 1 9 9 N 1.36930 * 120.00319 * 357.76694 * 7 2 1 10 10 C 1.43465 * 118.94473 * 213.20217 * 9 7 2 11 11 C 1.53802 * 107.95580 * 273.63347 * 10 9 7 12 12 C 1.47719 * 111.83450 * 281.59105 * 11 10 9 13 13 N 1.48216 * 110.06318 * 58.37182 * 12 11 10 14 14 C 1.34778 * 119.97066 * 102.58979 * 13 12 11 15 15 O 1.21545 * 119.99659 * 4.04283 * 14 13 12 16 16 C 1.47863 * 120.00294 * 184.03831 * 14 13 12 17 17 C 1.38965 * 121.42230 * 302.47689 * 16 14 13 18 18 N 1.32577 * 120.34017 * 179.97438 * 17 16 14 19 19 N 1.28386 * 123.43150 * 0.02562 * 18 17 16 20 20 C 1.33458 * 121.85473 * 359.94415 * 19 18 17 21 21 C 1.40585 * 121.74087 * 179.97438 * 20 19 18 22 22 C 1.36112 * 119.61260 * 180.02562 * 21 20 19 23 23 C 1.39369 * 121.13258 * 0.04102 * 22 21 20 24 24 C 1.36336 * 120.88606 * 359.97438 * 23 22 21 25 25 C 1.39863 * 119.50260 * 359.97438 * 24 23 22 26 26 C 1.43621 * 120.06122 * 282.31453 * 13 12 11 27 27 C 1.48869 * 118.93975 * 33.17975 * 9 7 2 28 28 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.76100 * 33.24031 * 10 9 7 30 30 H 1.08997 * 109.76790 * 153.96359 * 10 9 7 31 31 H 1.08999 * 109.00665 * 42.27400 * 11 10 9 32 32 H 1.08999 * 109.00191 * 161.05437 * 11 10 9 33 33 H 1.08994 * 109.40401 * 298.22907 * 12 11 10 34 34 H 1.09001 * 109.52516 * 178.59108 * 12 11 10 35 35 H 1.07998 * 119.82554 * 359.70240 * 17 16 14 36 36 H 1.08000 * 120.18943 * 0.02935 * 21 20 19 37 37 H 1.08007 * 119.43295 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.55956 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.25340 * 180.02562 * 24 23 22 40 40 H 1.08998 * 108.87505 * 211.70394 * 26 13 12 41 41 H 1.09000 * 108.87424 * 330.24114 * 26 13 12 42 42 H 1.09005 * 109.47632 * 20.63432 * 27 9 7 43 43 H 1.09000 * 109.48593 * 260.61350 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0896 -1.2024 -0.0370 9 7 1.3264 -2.3876 0.0451 10 6 1.9122 -3.5010 0.7346 11 6 2.8307 -4.2402 -0.2531 12 6 2.0640 -5.0979 -1.1797 13 7 1.0874 -4.2810 -1.9384 14 6 1.3444 -3.9394 -3.2166 15 8 2.3407 -4.3619 -3.7700 16 6 0.4143 -3.0507 -3.9458 17 6 -0.9269 -3.3784 -4.1035 18 7 -1.7421 -2.5654 -4.7610 19 7 -1.3643 -1.4546 -5.2821 20 6 -0.1019 -1.0301 -5.1973 21 6 0.3093 0.1865 -5.7693 22 6 1.6083 0.5774 -5.6572 23 6 2.5418 -0.2088 -4.9843 24 6 2.1794 -1.3945 -4.4175 25 6 0.8526 -1.8265 -4.5126 26 6 -0.1352 -3.8580 -1.3148 27 6 -0.0014 -2.4794 -0.6218 28 1 -0.4850 0.8401 0.0004 29 1 2.4954 -3.1435 1.5831 30 1 1.1279 -4.1728 1.0832 31 1 3.3944 -3.5073 -0.8303 32 1 3.5289 -4.8611 0.3082 33 1 1.5317 -5.8603 -0.6109 34 1 2.7472 -5.5830 -1.8768 35 1 -1.3061 -4.3022 -3.6923 36 1 -0.4014 0.8073 -6.2946 37 1 1.9209 1.5128 -6.0974 38 1 3.5659 0.1262 -4.9103 39 1 2.9112 -1.9955 -3.8980 40 1 -0.9154 -3.7970 -2.0735 41 1 -0.4257 -4.5988 -0.5698 42 1 -0.0896 -1.6881 -1.3663 43 1 -0.7904 -2.3683 0.1220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982033385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:12 Heat of formation + Delta-G solvation = 88.135390 kcal Electronic energy + Delta-G solvation = -29286.150243 eV Core-core repulsion = 25526.316017 eV Total energy + Delta-G solvation = -3759.834226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38973 -39.63818 -37.69832 -37.10194 -34.42258 -33.85925 -32.46884 -31.49837 -30.97094 -30.19813 -27.80650 -26.16758 -25.09802 -24.35520 -23.73048 -23.06511 -21.66171 -19.87383 -19.19420 -18.51607 -18.25866 -17.19575 -16.42585 -16.15084 -15.78147 -15.32208 -14.95558 -14.85981 -14.39452 -14.27159 -14.05243 -13.78861 -13.59237 -13.17302 -13.10837 -12.49930 -12.40043 -12.28384 -12.23420 -11.97563 -11.63594 -11.53686 -10.99147 -10.93601 -10.71193 -10.65660 -10.57104 -10.32556 -10.26725 -10.20887 -9.97177 -9.77333 -9.32224 -9.21702 -8.56275 -8.32620 -8.14193 -6.66864 -5.88234 -3.39064 -0.02935 0.76696 1.80463 2.68664 2.90937 3.28320 3.30171 3.36946 3.37886 4.02579 4.09608 4.39364 4.44682 4.45685 4.59463 4.88846 4.94420 5.18743 5.22673 5.24559 5.29276 5.38643 5.55172 5.56468 5.66982 5.70000 5.81764 5.85501 5.95426 6.01472 6.05984 6.19506 6.22622 6.33559 6.35067 6.41174 6.45773 6.72221 6.75057 6.78143 6.95022 7.27475 7.44727 7.70298 7.74066 8.28441 8.41580 8.73091 9.14879 9.78661 10.27851 11.19065 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.007583 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.315517 B = 3691.444520 C = 5128.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.591 5.591 10 C 0.162 3.838 11 C -0.170 4.170 12 C 0.128 3.872 13 N -0.568 5.568 14 C 0.570 3.430 15 O -0.540 6.540 16 C -0.078 4.078 17 C 0.035 3.965 18 N -0.221 5.221 19 N -0.198 5.198 20 C 0.069 3.931 21 C -0.083 4.083 22 C -0.094 4.094 23 C -0.095 4.095 24 C -0.080 4.080 25 C -0.022 4.022 26 C 0.061 3.939 27 C 0.168 3.832 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -5.366 -6.980 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.388 4.388 8 H 0.080 0.920 9 N -0.313 5.313 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.008 3.992 13 N -0.298 5.298 14 C 0.355 3.645 15 O -0.419 6.419 16 C -0.093 4.093 17 C -0.118 4.118 18 N -0.074 5.074 19 N -0.052 5.052 20 C -0.060 4.060 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.099 4.099 25 C -0.031 4.031 26 C -0.065 4.065 27 C 0.043 3.957 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.192 0.808 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.330 -5.249 -7.721 9.342 hybrid contribution 1.791 0.771 0.810 2.111 sum 2.120 -4.478 -6.911 8.504 Atomic orbital electron populations 1.69929 1.05227 1.25407 1.54325 1.25221 0.95431 0.98130 0.99660 0.86325 0.79476 0.84271 0.77466 1.20202 1.21534 1.21429 1.19120 0.90429 0.83388 1.45815 0.92028 1.43589 1.19164 1.08824 1.59675 1.20308 0.94169 0.89533 0.92625 1.22000 0.99908 0.99697 0.99544 1.20789 0.91547 0.92601 0.94305 1.47331 1.21047 1.50928 1.10503 1.17760 0.84784 0.79914 0.81999 1.90755 1.27905 1.55155 1.68042 1.21113 0.95486 0.95202 0.97529 1.24106 0.89642 1.00869 0.97133 1.72940 1.30490 0.98782 1.05140 1.73519 1.13459 1.06474 1.11792 1.20238 0.91239 0.96557 0.97984 1.20715 0.96525 0.93923 0.99206 1.21026 0.92926 0.99724 0.97750 1.21116 1.00417 0.93820 0.96109 1.21033 0.94359 0.96753 0.97727 1.18516 0.95593 0.93078 0.95957 1.22627 0.85025 1.01004 0.97802 1.21937 0.87361 0.90840 0.95605 0.93560 0.93432 0.94796 0.91453 0.92335 0.91499 0.90094 0.80808 0.83917 0.84703 0.84841 0.84189 0.91193 0.91345 0.90475 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 10.59 55.49 0.59 -24.53 16 2 C 0.01 0.39 5.27 -17.43 -0.09 0.30 16 3 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.26 -6.68 9.21 -15.06 -0.14 -6.82 16 8 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 9 N -0.59 -13.59 2.53 -171.99 -0.44 -14.02 16 10 C 0.16 3.10 5.63 -5.23 -0.03 3.07 16 11 C -0.17 -2.85 5.66 -28.87 -0.16 -3.01 16 12 C 0.13 1.98 5.76 -5.65 -0.03 1.94 16 13 N -0.57 -9.76 2.45 -177.46 -0.43 -10.20 16 14 C 0.57 10.53 6.47 -12.32 -0.08 10.45 16 15 O -0.54 -10.92 15.59 5.33 0.08 -10.84 16 16 C -0.08 -1.41 5.08 -104.31 -0.53 -1.94 16 17 C 0.03 0.57 9.05 -16.96 -0.15 0.41 16 18 N -0.22 -3.91 11.47 30.73 0.35 -3.56 16 19 N -0.20 -3.60 11.52 32.21 0.37 -3.23 16 20 C 0.07 1.22 6.69 -84.87 -0.57 0.65 16 21 C -0.08 -1.20 10.01 -39.46 -0.39 -1.59 16 22 C -0.09 -1.22 9.94 -39.93 -0.40 -1.61 16 23 C -0.09 -1.37 9.96 -39.85 -0.40 -1.77 16 24 C -0.08 -1.40 9.33 -39.66 -0.37 -1.77 16 25 C -0.02 -0.41 5.77 -106.50 -0.61 -1.03 16 26 C 0.06 1.03 5.02 -4.58 -0.02 1.01 16 27 C 0.17 3.71 5.14 -1.74 -0.01 3.71 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 30 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 31 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.08 1.25 7.09 -51.93 -0.37 0.88 16 35 H 0.18 2.27 7.00 -52.49 -0.37 1.90 16 36 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.14 2.59 6.77 -52.49 -0.36 2.24 16 40 H 0.07 1.10 4.14 -51.93 -0.22 0.88 16 41 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 42 H 0.08 1.98 6.61 -51.93 -0.34 1.64 16 43 H 0.04 1.01 7.95 -51.93 -0.41 0.59 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -31.06 346.33 -8.61 -39.68 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.34 Total: 3.31 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -3.99 Total: 2.00 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.44 Total: -55.54 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.06 -8.61 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982033385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.811 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds