Wall clock time and date at job start Tue Mar 31 2020 15:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47475 * 299.99880 * 3 2 1 6 6 H 1.48498 * 109.47390 * 60.00426 * 3 2 1 7 7 C 1.38812 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99394 * 177.76563 * 7 2 1 9 9 N 1.36930 * 120.00319 * 357.76694 * 7 2 1 10 10 C 1.43465 * 118.94473 * 213.20217 * 9 7 2 11 11 C 1.53802 * 107.95580 * 273.63347 * 10 9 7 12 12 C 1.47719 * 111.83450 * 281.59105 * 11 10 9 13 13 N 1.48216 * 110.06318 * 58.37182 * 12 11 10 14 14 C 1.34778 * 119.97066 * 102.58979 * 13 12 11 15 15 O 1.21545 * 119.99659 * 4.04283 * 14 13 12 16 16 C 1.47863 * 120.00294 * 184.03831 * 14 13 12 17 17 C 1.38965 * 121.42230 * 302.47689 * 16 14 13 18 18 N 1.32577 * 120.34017 * 179.97438 * 17 16 14 19 19 N 1.28386 * 123.43150 * 0.02562 * 18 17 16 20 20 C 1.33458 * 121.85473 * 359.94415 * 19 18 17 21 21 C 1.40585 * 121.74087 * 179.97438 * 20 19 18 22 22 C 1.36112 * 119.61260 * 180.02562 * 21 20 19 23 23 C 1.39369 * 121.13258 * 0.04102 * 22 21 20 24 24 C 1.36336 * 120.88606 * 359.97438 * 23 22 21 25 25 C 1.39863 * 119.50260 * 359.97438 * 24 23 22 26 26 C 1.43621 * 120.06122 * 282.31453 * 13 12 11 27 27 C 1.48869 * 118.93975 * 33.17975 * 9 7 2 28 28 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.76100 * 33.24031 * 10 9 7 30 30 H 1.08997 * 109.76790 * 153.96359 * 10 9 7 31 31 H 1.08999 * 109.00665 * 42.27400 * 11 10 9 32 32 H 1.08999 * 109.00191 * 161.05437 * 11 10 9 33 33 H 1.08994 * 109.40401 * 298.22907 * 12 11 10 34 34 H 1.09001 * 109.52516 * 178.59108 * 12 11 10 35 35 H 1.07998 * 119.82554 * 359.70240 * 17 16 14 36 36 H 1.08000 * 120.18943 * 0.02935 * 21 20 19 37 37 H 1.08007 * 119.43295 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.55956 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.25340 * 180.02562 * 24 23 22 40 40 H 1.08998 * 108.87505 * 211.70394 * 26 13 12 41 41 H 1.09000 * 108.87424 * 330.24114 * 26 13 12 42 42 H 1.09005 * 109.47632 * 20.63432 * 27 9 7 43 43 H 1.09000 * 109.48593 * 260.61350 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0896 -1.2024 -0.0370 9 7 1.3264 -2.3876 0.0451 10 6 1.9122 -3.5010 0.7346 11 6 2.8307 -4.2402 -0.2531 12 6 2.0640 -5.0979 -1.1797 13 7 1.0874 -4.2810 -1.9384 14 6 1.3444 -3.9394 -3.2166 15 8 2.3407 -4.3619 -3.7700 16 6 0.4143 -3.0507 -3.9458 17 6 -0.9269 -3.3784 -4.1035 18 7 -1.7421 -2.5654 -4.7610 19 7 -1.3643 -1.4546 -5.2821 20 6 -0.1019 -1.0301 -5.1973 21 6 0.3093 0.1865 -5.7693 22 6 1.6083 0.5774 -5.6572 23 6 2.5418 -0.2088 -4.9843 24 6 2.1794 -1.3945 -4.4175 25 6 0.8526 -1.8265 -4.5126 26 6 -0.1352 -3.8580 -1.3148 27 6 -0.0014 -2.4794 -0.6218 28 1 -0.4850 0.8401 0.0004 29 1 2.4954 -3.1435 1.5831 30 1 1.1279 -4.1728 1.0832 31 1 3.3944 -3.5073 -0.8303 32 1 3.5289 -4.8611 0.3082 33 1 1.5317 -5.8603 -0.6109 34 1 2.7472 -5.5830 -1.8768 35 1 -1.3061 -4.3022 -3.6923 36 1 -0.4014 0.8073 -6.2946 37 1 1.9209 1.5128 -6.0974 38 1 3.5659 0.1262 -4.9103 39 1 2.9112 -1.9955 -3.8980 40 1 -0.9154 -3.7970 -2.0735 41 1 -0.4257 -4.5988 -0.5698 42 1 -0.0896 -1.6881 -1.3663 43 1 -0.7904 -2.3683 0.1220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982033385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:11 Heat of formation + Delta-G solvation = 69.470132 kcal Electronic energy + Delta-G solvation = -29286.959629 eV Core-core repulsion = 25526.316017 eV Total energy + Delta-G solvation = -3760.643612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68813 -41.03262 -38.93488 -38.64750 -36.06326 -35.24009 -33.96040 -32.76913 -32.72717 -31.43983 -29.42558 -27.66215 -26.55093 -25.75413 -25.33063 -24.39314 -23.03873 -21.53371 -20.52669 -19.76898 -19.57062 -18.80592 -18.03868 -17.57078 -17.19112 -16.79283 -16.31874 -16.17283 -15.95128 -15.72873 -15.48890 -15.34057 -15.02933 -14.59046 -14.57851 -13.95758 -13.90531 -13.67158 -13.46382 -13.34225 -13.22615 -12.89130 -12.86794 -12.54557 -12.40392 -12.08243 -11.97943 -11.94856 -11.80790 -11.68179 -11.54738 -11.45798 -10.71298 -10.54704 -10.44129 -9.73440 -9.42785 -8.55488 -7.88548 -5.40414 -1.31944 -0.48262 0.54942 1.27948 1.37526 1.41071 1.49106 1.66172 1.98760 2.46343 2.76607 2.84174 3.11369 3.19311 3.28785 3.34163 3.66932 3.69971 3.76941 4.01307 4.05672 4.14861 4.16512 4.26865 4.34590 4.43782 4.47658 4.55607 4.65721 4.72528 4.78894 4.82827 4.90668 4.98209 5.02614 5.17826 5.21680 5.24984 5.26865 5.44235 5.59563 5.64455 5.68318 5.70400 6.26156 6.41552 6.88360 7.18145 7.40555 7.92359 8.34316 9.14991 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.007583 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.315517 B = 3691.444520 C = 5128.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.034 4.034 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.256 4.256 8 H 0.053 0.947 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.155 4.155 12 C 0.125 3.875 13 N -0.567 5.567 14 C 0.571 3.429 15 O -0.564 6.564 16 C -0.101 4.101 17 C 0.040 3.960 18 N -0.238 5.238 19 N -0.211 5.211 20 C 0.049 3.951 21 C -0.087 4.087 22 C -0.086 4.086 23 C -0.082 4.082 24 C -0.118 4.118 25 C -0.043 4.043 26 C 0.073 3.927 27 C 0.180 3.820 28 H 0.246 0.754 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.206 0.794 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -5.774 -7.260 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.230 4.230 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.387 4.387 8 H 0.070 0.930 9 N -0.327 5.327 10 C 0.030 3.970 11 C -0.196 4.196 12 C 0.005 3.995 13 N -0.296 5.296 14 C 0.357 3.643 15 O -0.444 6.444 16 C -0.116 4.116 17 C -0.112 4.112 18 N -0.089 5.089 19 N -0.065 5.065 20 C -0.081 4.081 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.052 4.052 26 C -0.052 4.052 27 C 0.054 3.946 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.188 0.812 37 H 0.200 0.800 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.904 -5.692 -7.988 9.850 hybrid contribution 1.706 0.927 0.903 2.141 sum 2.610 -4.765 -7.086 8.929 Atomic orbital electron populations 1.70106 1.06219 1.25197 1.55958 1.25786 0.96075 1.00674 1.00470 0.85510 0.78864 0.81163 0.76957 1.19337 1.21631 1.21860 1.19257 0.90242 0.84806 1.44356 0.92970 1.43794 1.19222 1.09095 1.60608 1.20491 0.94962 0.88893 0.92669 1.21796 0.99684 0.99168 0.98949 1.20996 0.91666 0.92721 0.94161 1.47437 1.21373 1.50642 1.10143 1.17866 0.84443 0.79536 0.82437 1.90724 1.28864 1.56058 1.68732 1.21230 0.96247 0.95618 0.98548 1.24491 0.88930 1.01453 0.96341 1.72871 1.30991 0.99125 1.05956 1.73427 1.13952 1.06885 1.12188 1.20648 0.90912 0.97822 0.98718 1.21178 0.97898 0.92968 0.98693 1.21531 0.91828 1.00800 0.96394 1.21597 1.02250 0.92352 0.93919 1.21011 0.93932 0.98514 1.00194 1.18806 0.96281 0.93681 0.96390 1.22420 0.85428 0.98716 0.98648 1.21595 0.86281 0.92650 0.94064 0.94440 0.94344 0.92339 0.95277 0.88977 0.87529 0.90004 0.77766 0.81233 0.80046 0.81960 0.86307 0.89800 0.87949 0.94697 0.96397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.05 10.59 21.65 0.23 -52.82 16 2 C -0.03 -1.85 5.27 84.86 0.45 -1.41 16 3 Si 0.95 44.07 29.55 68.60 2.03 46.10 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.26 -13.50 9.21 84.03 0.77 -12.73 16 8 H 0.05 2.81 7.83 -2.91 -0.02 2.78 16 9 N -0.60 -27.93 2.53 -698.04 -1.77 -29.70 16 10 C 0.16 5.77 5.63 87.21 0.49 6.27 16 11 C -0.16 -4.92 5.66 29.21 0.17 -4.75 16 12 C 0.12 3.51 5.76 84.40 0.49 4.00 16 13 N -0.57 -18.77 2.45 -833.63 -2.04 -20.81 16 14 C 0.57 21.18 6.47 86.79 0.56 21.74 16 15 O -0.56 -23.12 15.59 -3.86 -0.06 -23.18 16 16 C -0.10 -3.71 5.08 -19.66 -0.10 -3.81 16 17 C 0.04 1.31 9.05 84.75 0.77 2.07 16 18 N -0.24 -8.46 11.47 -56.68 -0.65 -9.11 16 19 N -0.21 -7.73 11.52 -51.99 -0.60 -8.33 16 20 C 0.05 1.73 6.69 40.38 0.27 2.00 16 21 C -0.09 -2.38 10.01 22.35 0.22 -2.15 16 22 C -0.09 -2.00 9.94 22.05 0.22 -1.78 16 23 C -0.08 -2.26 9.96 22.10 0.22 -2.04 16 24 C -0.12 -4.22 9.33 22.22 0.21 -4.01 16 25 C -0.04 -1.61 5.77 -21.08 -0.12 -1.73 16 26 C 0.07 2.38 5.02 87.55 0.44 2.82 16 27 C 0.18 8.03 5.14 86.56 0.44 8.48 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.04 1.47 8.02 -2.39 -0.02 1.45 16 30 H 0.06 1.88 7.59 -2.39 -0.02 1.86 16 31 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 2.23 8.05 -2.39 -0.02 2.21 16 34 H 0.08 2.36 7.09 -2.39 -0.02 2.34 16 35 H 0.21 5.05 7.00 -2.91 -0.02 5.03 16 36 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.12 4.66 6.77 -2.91 -0.02 4.64 16 40 H 0.08 2.52 4.14 -2.39 -0.01 2.51 16 41 H 0.10 2.69 7.72 -2.39 -0.02 2.67 16 42 H 0.03 1.85 6.61 -2.38 -0.02 1.83 16 43 H 0.02 0.88 7.95 -2.39 -0.02 0.86 16 Total: -1.00 -71.30 346.33 3.68 -67.62 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.04 Total: 17.28 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.50 Total: 12.95 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -4.83 Total: -120.77 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.30 3.68 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982033385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.089 kcal (2) G-P(sol) polarization free energy of solvation -71.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds