Wall clock time and date at job start Tue Mar 31 2020 14:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46880 * 270.00087 * 3 2 1 5 5 H 1.48497 * 109.47281 * 29.99819 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00251 * 3 2 1 7 7 C 1.38808 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 190.49625 * 7 2 1 9 9 N 1.36939 * 120.00006 * 10.49342 * 7 2 1 10 10 C 1.43457 * 118.94274 * 208.82998 * 9 7 2 11 11 C 1.53793 * 107.96659 * 273.65380 * 10 9 7 12 12 C 1.47140 * 111.84118 * 281.67261 * 11 10 9 13 13 N 1.48203 * 110.20247 * 58.37986 * 12 11 10 14 14 C 1.34778 * 119.97213 * 102.38207 * 13 12 11 15 15 O 1.21549 * 119.99571 * 353.30876 * 14 13 12 16 16 C 1.47870 * 120.00250 * 173.31521 * 14 13 12 17 17 C 1.40619 * 119.75217 * 24.75689 * 16 14 13 18 18 C 1.35731 * 120.83513 * 179.97438 * 17 16 14 19 19 C 1.40709 * 120.07717 * 359.97438 * 18 17 16 20 20 N 1.33803 * 120.85313 * 180.02562 * 19 18 17 21 21 C 1.31322 * 119.76002 * 179.97438 * 20 19 18 22 22 C 1.39755 * 120.71309 * 359.97438 * 21 20 19 23 23 N 1.31270 * 120.67586 * 0.02562 * 22 21 20 24 24 C 1.33829 * 119.73480 * 359.97438 * 23 22 21 25 25 C 1.38406 * 119.75586 * 204.48309 * 16 14 13 26 26 C 1.43729 * 119.98391 * 282.18298 * 13 12 11 27 27 C 1.48863 * 118.94002 * 28.85559 * 9 7 2 28 28 H 0.96996 * 120.00233 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.76484 * 154.03509 * 10 9 7 30 30 H 1.09000 * 109.80377 * 33.29801 * 10 9 7 31 31 H 1.08998 * 109.00572 * 161.06196 * 11 10 9 32 32 H 1.09006 * 108.93994 * 42.23760 * 11 10 9 33 33 H 1.09001 * 109.32734 * 178.56333 * 12 11 10 34 34 H 1.09001 * 109.32448 * 298.19985 * 12 11 10 35 35 H 1.08004 * 119.58640 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.96152 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.64259 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.66021 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.24890 * 359.97438 * 25 16 14 40 40 H 1.09008 * 108.97767 * 330.20206 * 26 13 12 41 41 H 1.09005 * 108.86137 * 211.62000 * 26 13 12 42 42 H 1.08996 * 109.48099 * 260.58417 * 27 9 7 43 43 H 1.09005 * 109.47618 * 20.61349 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0767 -1.2099 0.1698 9 7 1.3429 -2.3780 -0.2170 10 6 1.8535 -3.5841 0.3683 11 6 2.8990 -4.1726 -0.5939 12 6 2.2696 -4.8754 -1.7230 13 7 1.3850 -3.9516 -2.4717 14 6 1.7983 -3.4229 -3.6405 15 8 2.9385 -3.6049 -4.0203 16 6 0.8649 -2.6211 -4.4605 17 6 -0.2232 -1.9744 -3.8480 18 6 -1.0931 -1.2326 -4.5796 19 6 -0.9134 -1.1017 -5.9690 20 7 -1.7612 -0.3738 -6.7050 21 6 -1.5728 -0.2657 -8.0001 22 6 -0.4945 -0.9028 -8.6202 23 7 0.3510 -1.6225 -7.9199 24 6 0.1803 -1.7478 -6.5984 25 6 1.0719 -2.5082 -5.8243 26 6 0.0852 -3.6236 -1.9532 27 6 0.1110 -2.3638 -1.0527 28 1 -0.4850 0.8400 0.0004 29 1 1.0415 -4.2970 0.5112 30 1 2.3202 -3.3602 1.3276 31 1 3.5301 -4.8732 -0.0470 32 1 3.5192 -3.3638 -0.9804 33 1 3.0445 -5.2529 -2.3902 34 1 1.6809 -5.7112 -1.3447 35 1 -0.3686 -2.0691 -2.7820 36 1 -1.9238 -0.7416 -4.0945 37 1 -2.2586 0.3220 -8.5925 38 1 -0.3555 -0.8021 -9.6865 39 1 1.9117 -3.0026 -6.2899 40 1 -0.2868 -4.4662 -1.3701 41 1 -0.5928 -3.4465 -2.7881 42 1 -0.7667 -2.3608 -0.4065 43 1 0.1058 -1.4705 -1.6773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989624066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:38 Heat of formation + Delta-G solvation = 116.532250 kcal Electronic energy + Delta-G solvation = -28450.326924 eV Core-core repulsion = 24691.724079 eV Total energy + Delta-G solvation = -3758.602846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48692 -40.18577 -37.27653 -36.98038 -34.81563 -34.37149 -33.23820 -31.21517 -30.65347 -30.36302 -27.98929 -26.15792 -25.23798 -24.31905 -23.74440 -22.77404 -21.73963 -19.92238 -19.82424 -18.75853 -17.73031 -17.00536 -16.71071 -16.11471 -16.01537 -15.36182 -15.11369 -14.90894 -14.56196 -14.27992 -13.99932 -13.85192 -13.59580 -13.22634 -13.07303 -12.66428 -12.50363 -12.19203 -11.96707 -11.82037 -11.72782 -11.71649 -11.53612 -11.09305 -10.89319 -10.73961 -10.57340 -10.31477 -10.16150 -9.91866 -9.77126 -9.52340 -9.17053 -8.88468 -8.61375 -8.49564 -8.13828 -6.74637 -5.88879 -3.34570 0.09619 0.45279 1.85260 2.49690 3.29045 3.34224 3.38068 3.41425 3.43124 3.98204 4.04330 4.08958 4.22829 4.43157 4.65407 4.79076 4.88779 5.05622 5.17186 5.25727 5.33045 5.35259 5.43640 5.56384 5.67049 5.74505 5.86547 5.90709 5.95162 5.97179 6.12759 6.14686 6.24126 6.36244 6.39050 6.46390 6.63985 6.76948 6.78027 6.96369 7.16625 7.18858 7.27385 7.65079 7.74488 7.80713 8.37262 8.48684 9.12189 9.77532 10.23896 11.19569 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.004949 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.705030 B = 5656.531092 C = 6983.847835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.162 3.838 11 C -0.172 4.172 12 C 0.131 3.869 13 N -0.575 5.575 14 C 0.562 3.438 15 O -0.543 6.543 16 C -0.098 4.098 17 C -0.118 4.118 18 C -0.091 4.091 19 C 0.092 3.908 20 N -0.426 5.426 21 C 0.076 3.924 22 C 0.065 3.935 23 N -0.419 5.419 24 C 0.066 3.934 25 C -0.029 4.029 26 C 0.046 3.954 27 C 0.145 3.855 28 H 0.255 0.745 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.205 0.795 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.148 0.852 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -6.359 -11.090 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.034 3.966 11 C -0.213 4.213 12 C 0.010 3.990 13 N -0.305 5.305 14 C 0.351 3.649 15 O -0.422 6.422 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.110 4.110 19 C -0.031 4.031 20 N -0.140 5.140 21 C -0.100 4.100 22 C -0.111 4.111 23 N -0.133 5.133 24 C -0.057 4.057 25 C -0.049 4.049 26 C -0.079 4.079 27 C 0.020 3.980 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.190 0.810 39 H 0.166 0.834 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.433 -6.440 -11.009 13.503 hybrid contribution 0.398 1.194 -0.174 1.271 sum -4.035 -5.246 -11.183 12.995 Atomic orbital electron populations 1.69922 1.05073 1.25674 1.54888 1.25045 0.95421 0.98237 1.00295 0.86324 0.79228 0.83693 0.77814 1.21424 1.21556 1.20367 1.19188 0.91173 0.84187 1.43837 0.91734 1.43512 1.28345 1.03754 1.55185 1.20319 0.93838 0.88464 0.93961 1.21889 1.00897 1.00614 0.97920 1.20613 0.93639 0.90813 0.93922 1.47235 1.17470 1.45697 1.20067 1.18048 0.86723 0.79102 0.81070 1.90729 1.18767 1.60286 1.72454 1.20078 0.96668 0.99870 0.93677 1.23474 0.91592 0.92778 1.05801 1.20810 1.01075 0.98829 0.90300 1.19766 0.92410 0.95305 0.95648 1.68733 1.25688 1.13040 1.06563 1.24081 0.97084 0.97138 0.91697 1.24005 0.91688 0.93835 1.01608 1.68627 1.25694 1.13300 1.05634 1.19370 0.96041 0.99489 0.90812 1.21103 0.96995 0.94997 0.91816 1.23074 0.84226 1.01338 0.99298 1.22270 0.90260 0.93461 0.92054 0.93448 0.94712 0.93313 0.92425 0.91121 0.90378 0.91734 0.77938 0.83603 0.80980 0.80980 0.83386 0.91256 0.89329 0.92992 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.39 10.92 55.49 0.61 -23.79 16 2 C 0.01 0.22 5.02 -17.43 -0.09 0.13 16 3 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.64 9.24 -15.06 -0.14 -6.78 16 8 H 0.06 1.73 7.85 -52.49 -0.41 1.31 16 9 N -0.59 -13.37 2.53 -172.01 -0.43 -13.80 16 10 C 0.16 3.11 5.63 -5.24 -0.03 3.08 16 11 C -0.17 -2.98 5.64 -29.13 -0.16 -3.14 16 12 C 0.13 2.09 5.66 -5.92 -0.03 2.06 16 13 N -0.57 -10.07 2.44 -177.69 -0.43 -10.50 16 14 C 0.56 10.83 7.51 -12.32 -0.09 10.74 16 15 O -0.54 -11.80 16.05 5.32 0.09 -11.71 16 16 C -0.10 -1.72 5.64 -105.00 -0.59 -2.32 16 17 C -0.12 -1.98 7.03 -39.58 -0.28 -2.26 16 18 C -0.09 -1.43 9.95 -39.55 -0.39 -1.83 16 19 C 0.09 1.47 6.59 -84.72 -0.56 0.91 16 20 N -0.43 -6.08 10.46 -10.74 -0.11 -6.20 16 21 C 0.08 0.80 11.21 -17.20 -0.19 0.60 16 22 C 0.06 0.68 11.21 -17.22 -0.19 0.49 16 23 N -0.42 -6.02 10.46 -10.81 -0.11 -6.13 16 24 C 0.07 1.07 6.58 -84.82 -0.56 0.51 16 25 C -0.03 -0.48 9.55 -38.69 -0.37 -0.85 16 26 C 0.05 0.74 4.72 -4.52 -0.02 0.72 16 27 C 0.14 2.98 4.37 -1.75 -0.01 2.97 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.03 0.60 7.59 -51.93 -0.39 0.21 16 30 H 0.05 0.96 8.02 -51.93 -0.42 0.55 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 33 H 0.08 1.26 7.21 -51.93 -0.37 0.89 16 34 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.20 3.54 1.48 -52.51 -0.08 3.46 16 36 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.15 2.42 7.81 -52.49 -0.41 2.01 16 40 H 0.07 0.99 7.73 -51.92 -0.40 0.59 16 41 H 0.09 1.30 4.51 -51.93 -0.23 1.07 16 42 H 0.05 1.13 7.95 -51.93 -0.41 0.71 16 43 H 0.09 2.12 4.38 -51.93 -0.23 1.90 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -31.91 340.42 -9.03 -40.94 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.01 Total: 4.46 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.71 Total: 5.04 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.49 Total: -60.42 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.91 -9.03 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989624066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.468 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds