Wall clock time and date at job start Tue Mar 31 2020 14:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46880 * 270.00087 * 3 2 1 5 5 H 1.48497 * 109.47281 * 29.99819 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00251 * 3 2 1 7 7 C 1.38808 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 190.49625 * 7 2 1 9 9 N 1.36939 * 120.00006 * 10.49342 * 7 2 1 10 10 C 1.43457 * 118.94274 * 208.82998 * 9 7 2 11 11 C 1.53793 * 107.96659 * 273.65380 * 10 9 7 12 12 C 1.47140 * 111.84118 * 281.67261 * 11 10 9 13 13 N 1.48203 * 110.20247 * 58.37986 * 12 11 10 14 14 C 1.34778 * 119.97213 * 102.38207 * 13 12 11 15 15 O 1.21549 * 119.99571 * 353.30876 * 14 13 12 16 16 C 1.47870 * 120.00250 * 173.31521 * 14 13 12 17 17 C 1.40619 * 119.75217 * 24.75689 * 16 14 13 18 18 C 1.35731 * 120.83513 * 179.97438 * 17 16 14 19 19 C 1.40709 * 120.07717 * 359.97438 * 18 17 16 20 20 N 1.33803 * 120.85313 * 180.02562 * 19 18 17 21 21 C 1.31322 * 119.76002 * 179.97438 * 20 19 18 22 22 C 1.39755 * 120.71309 * 359.97438 * 21 20 19 23 23 N 1.31270 * 120.67586 * 0.02562 * 22 21 20 24 24 C 1.33829 * 119.73480 * 359.97438 * 23 22 21 25 25 C 1.38406 * 119.75586 * 204.48309 * 16 14 13 26 26 C 1.43729 * 119.98391 * 282.18298 * 13 12 11 27 27 C 1.48863 * 118.94002 * 28.85559 * 9 7 2 28 28 H 0.96996 * 120.00233 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.76484 * 154.03509 * 10 9 7 30 30 H 1.09000 * 109.80377 * 33.29801 * 10 9 7 31 31 H 1.08998 * 109.00572 * 161.06196 * 11 10 9 32 32 H 1.09006 * 108.93994 * 42.23760 * 11 10 9 33 33 H 1.09001 * 109.32734 * 178.56333 * 12 11 10 34 34 H 1.09001 * 109.32448 * 298.19985 * 12 11 10 35 35 H 1.08004 * 119.58640 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.96152 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.64259 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.66021 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.24890 * 359.97438 * 25 16 14 40 40 H 1.09008 * 108.97767 * 330.20206 * 26 13 12 41 41 H 1.09005 * 108.86137 * 211.62000 * 26 13 12 42 42 H 1.08996 * 109.48099 * 260.58417 * 27 9 7 43 43 H 1.09005 * 109.47618 * 20.61349 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0767 -1.2099 0.1698 9 7 1.3429 -2.3780 -0.2170 10 6 1.8535 -3.5841 0.3683 11 6 2.8990 -4.1726 -0.5939 12 6 2.2696 -4.8754 -1.7230 13 7 1.3850 -3.9516 -2.4717 14 6 1.7983 -3.4229 -3.6405 15 8 2.9385 -3.6049 -4.0203 16 6 0.8649 -2.6211 -4.4605 17 6 -0.2232 -1.9744 -3.8480 18 6 -1.0931 -1.2326 -4.5796 19 6 -0.9134 -1.1017 -5.9690 20 7 -1.7612 -0.3738 -6.7050 21 6 -1.5728 -0.2657 -8.0001 22 6 -0.4945 -0.9028 -8.6202 23 7 0.3510 -1.6225 -7.9199 24 6 0.1803 -1.7478 -6.5984 25 6 1.0719 -2.5082 -5.8243 26 6 0.0852 -3.6236 -1.9532 27 6 0.1110 -2.3638 -1.0527 28 1 -0.4850 0.8400 0.0004 29 1 1.0415 -4.2970 0.5112 30 1 2.3202 -3.3602 1.3276 31 1 3.5301 -4.8732 -0.0470 32 1 3.5192 -3.3638 -0.9804 33 1 3.0445 -5.2529 -2.3902 34 1 1.6809 -5.7112 -1.3447 35 1 -0.3686 -2.0691 -2.7820 36 1 -1.9238 -0.7416 -4.0945 37 1 -2.2586 0.3220 -8.5925 38 1 -0.3555 -0.8021 -9.6865 39 1 1.9117 -3.0026 -6.2899 40 1 -0.2868 -4.4662 -1.3701 41 1 -0.5928 -3.4465 -2.7881 42 1 -0.7667 -2.3608 -0.4065 43 1 0.1058 -1.4705 -1.6773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989624066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:37 Heat of formation + Delta-G solvation = 95.911774 kcal Electronic energy + Delta-G solvation = -28451.221095 eV Core-core repulsion = 24691.724079 eV Total energy + Delta-G solvation = -3759.497017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61388 -41.51784 -38.77407 -38.27690 -36.06397 -35.83398 -34.67373 -32.98134 -31.86712 -31.57954 -29.55602 -27.54644 -26.61075 -25.61570 -25.25998 -24.05811 -23.05530 -21.50995 -21.10502 -20.07452 -18.95741 -18.42256 -18.11916 -17.54887 -17.27940 -16.87178 -16.40807 -16.24507 -15.99629 -15.68433 -15.42747 -15.12178 -15.06573 -14.66690 -14.41365 -14.08993 -13.96859 -13.58917 -13.37217 -13.20108 -12.99948 -12.90021 -12.83503 -12.75090 -12.64159 -12.42692 -12.11345 -12.02454 -11.70283 -11.54281 -11.43940 -10.95823 -10.55200 -10.17734 -10.03097 -9.79395 -9.54050 -8.60264 -7.88019 -5.33955 -1.01649 -0.62945 0.70818 1.29514 1.38768 1.43114 1.48362 1.96913 2.07524 2.47614 2.89108 2.98605 3.08563 3.18839 3.25601 3.37537 3.65273 3.76076 3.90807 3.99722 4.04887 4.17834 4.21422 4.26040 4.41331 4.45350 4.55350 4.63084 4.67047 4.70976 4.79477 4.91793 4.95429 5.05628 5.07331 5.16634 5.20418 5.26957 5.47966 5.50739 5.57856 5.66134 5.75356 6.19016 6.38063 6.41877 6.65558 7.04555 7.18412 7.93512 8.31908 9.16168 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.004949 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.705030 B = 5656.531092 C = 6983.847835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.032 4.032 3 Si 0.943 3.057 4 H -0.297 1.297 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.259 4.259 8 H 0.049 0.951 9 N -0.602 5.602 10 C 0.158 3.842 11 C -0.157 4.157 12 C 0.126 3.874 13 N -0.574 5.574 14 C 0.555 3.445 15 O -0.580 6.580 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.090 4.090 19 C 0.077 3.923 20 N -0.453 5.453 21 C 0.096 3.904 22 C 0.085 3.915 23 N -0.447 5.447 24 C 0.049 3.951 25 C -0.031 4.031 26 C 0.056 3.944 27 C 0.150 3.850 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.197 0.803 36 H 0.155 0.845 37 H 0.226 0.774 38 H 0.225 0.775 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -6.765 -13.135 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.225 1.225 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.390 4.390 8 H 0.067 0.933 9 N -0.324 5.324 10 C 0.031 3.969 11 C -0.198 4.198 12 C 0.006 3.994 13 N -0.302 5.302 14 C 0.344 3.656 15 O -0.462 6.462 16 C -0.121 4.121 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.045 4.045 20 N -0.167 5.167 21 C -0.081 4.081 22 C -0.092 4.092 23 N -0.162 5.162 24 C -0.072 4.072 25 C -0.052 4.052 26 C -0.069 4.069 27 C 0.025 3.975 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.213 0.787 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.907 -6.895 -12.988 15.847 hybrid contribution 0.797 1.403 0.220 1.628 sum -5.111 -5.492 -12.768 14.809 Atomic orbital electron populations 1.70019 1.05493 1.25626 1.55827 1.25493 0.96122 1.00055 1.01137 0.85635 0.78539 0.81512 0.77004 1.22479 1.21276 1.20125 1.19279 0.90809 0.85897 1.43049 0.93325 1.43747 1.28670 1.03850 1.56143 1.20481 0.94945 0.87808 0.93683 1.21705 1.00131 0.99831 0.98159 1.20804 0.94149 0.91355 0.93098 1.47378 1.17979 1.45273 1.19601 1.18410 0.86531 0.78946 0.81682 1.90689 1.20173 1.61833 1.73456 1.19981 0.97167 1.01011 0.93982 1.23261 0.92045 0.93932 1.05299 1.20926 1.00915 0.98293 0.90807 1.19808 0.92914 0.95957 0.95800 1.68805 1.25836 1.13664 1.08376 1.25066 0.97026 0.95324 0.90645 1.24991 0.89871 0.90727 1.03603 1.68687 1.27421 1.15174 1.04889 1.19359 0.96136 0.99924 0.91816 1.21115 0.97107 0.95200 0.91741 1.22925 0.84165 1.00216 0.99565 1.22132 0.88760 0.94781 0.91812 0.93873 0.91898 0.94381 0.89243 0.95591 0.90750 0.87620 0.78747 0.82781 0.75766 0.75828 0.83954 0.88115 0.87525 0.94327 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.61 10.92 21.65 0.24 -50.37 16 2 C -0.03 -1.72 5.02 84.86 0.43 -1.29 16 3 Si 0.94 45.45 29.57 68.60 2.03 47.48 16 4 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.26 -13.97 9.24 84.03 0.78 -13.20 16 8 H 0.05 2.72 7.85 -2.91 -0.02 2.69 16 9 N -0.60 -27.83 2.53 -698.11 -1.76 -29.59 16 10 C 0.16 5.94 5.63 87.21 0.49 6.43 16 11 C -0.16 -5.35 5.64 29.04 0.16 -5.18 16 12 C 0.13 3.85 5.66 84.23 0.48 4.33 16 13 N -0.57 -19.97 2.44 -834.38 -2.04 -22.01 16 14 C 0.55 22.05 7.51 86.79 0.65 22.70 16 15 O -0.58 -26.23 16.05 -3.87 -0.06 -26.29 16 16 C -0.12 -4.26 5.64 -20.11 -0.11 -4.38 16 17 C -0.13 -4.39 7.03 22.27 0.16 -4.23 16 18 C -0.09 -2.89 9.95 22.29 0.22 -2.67 16 19 C 0.08 2.41 6.59 40.32 0.27 2.68 16 20 N -0.45 -11.88 10.46 -187.89 -1.96 -13.85 16 21 C 0.10 1.59 11.21 85.14 0.95 2.55 16 22 C 0.09 1.43 11.21 85.14 0.95 2.38 16 23 N -0.45 -12.04 10.46 -188.12 -1.97 -14.01 16 24 C 0.05 1.57 6.58 40.25 0.27 1.83 16 25 C -0.03 -1.08 9.55 22.85 0.22 -0.86 16 26 C 0.06 1.77 4.72 87.53 0.41 2.18 16 27 C 0.15 6.26 4.37 86.56 0.38 6.64 16 28 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 29 H 0.06 2.02 7.59 -2.39 -0.02 2.00 16 30 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.03 1.10 7.90 -2.38 -0.02 1.08 16 33 H 0.07 2.36 7.21 -2.39 -0.02 2.34 16 34 H 0.11 2.40 8.05 -2.39 -0.02 2.38 16 35 H 0.20 7.01 1.48 -2.93 0.00 7.01 16 36 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.23 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.14 4.92 7.81 -2.91 -0.02 4.90 16 40 H 0.10 2.58 7.73 -2.38 -0.02 2.57 16 41 H 0.11 3.09 4.51 -2.38 -0.01 3.08 16 42 H 0.04 1.70 7.95 -2.39 -0.02 1.68 16 43 H 0.07 3.20 4.38 -2.38 -0.01 3.19 16 Total: -1.00 -73.61 340.42 2.23 -71.38 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.06 Total: 17.37 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.70 Total: 19.90 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -7.50 Total: -129.83 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.61 2.23 -71.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989624066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.289 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds