Wall clock time and date at job start Tue Mar 31 2020 14:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47004 * 270.00354 * 3 2 1 5 5 H 1.48498 * 109.46909 * 29.99809 * 3 2 1 6 6 H 1.48497 * 109.46925 * 150.00053 * 3 2 1 7 7 C 1.38814 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99311 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99687 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46153 * 204.99774 * 10 9 7 12 12 C 1.53191 * 109.31222 * 178.62940 * 11 10 9 13 13 N 1.46921 * 108.77588 * 54.64018 * 12 11 10 14 14 C 1.34775 * 120.63025 * 126.36887 * 13 12 11 15 15 O 1.21491 * 120.00483 * 0.07358 * 14 13 12 16 16 C 1.48356 * 119.99657 * 180.02562 * 14 13 12 17 17 C 1.40173 * 119.20240 * 157.93481 * 16 14 13 18 18 C 1.36623 * 119.71019 * 179.70481 * 17 16 14 19 19 C 1.40598 * 118.20574 * 0.27326 * 18 17 16 20 20 C 1.40732 * 121.37885 * 179.97438 * 19 18 17 21 21 C 1.36590 * 118.13209 * 180.02562 * 20 19 18 22 22 C 1.39424 * 119.84896 * 359.97438 * 21 20 19 23 23 N 1.31017 * 121.83993 * 359.97438 * 22 21 20 24 24 C 1.33860 * 121.42396 * 0.02562 * 23 22 21 25 25 N 1.31881 * 119.20712 * 338.21737 * 16 14 13 26 26 C 1.46930 * 118.73605 * 306.63737 * 13 12 11 27 27 C 1.52759 * 109.00565 * 53.31467 * 26 13 12 28 28 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00592 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46220 * 324.97718 * 10 9 7 31 31 H 1.09002 * 109.49466 * 58.68170 * 11 10 9 32 32 H 1.08995 * 109.52733 * 298.60023 * 11 10 9 33 33 H 1.09001 * 109.58584 * 294.84831 * 12 11 10 34 34 H 1.09003 * 109.70252 * 174.49964 * 12 11 10 35 35 H 1.08005 * 120.14518 * 359.97100 * 17 16 14 36 36 H 1.07994 * 120.89456 * 180.25947 * 18 17 16 37 37 H 1.08003 * 120.93196 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.07001 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.07864 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.58395 * 173.14145 * 26 13 12 41 41 H 1.08996 * 109.58675 * 293.57123 * 26 13 12 42 42 H 1.08997 * 109.56639 * 185.55184 * 27 26 13 43 43 H 1.09005 * 109.36214 * 65.49603 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.1799 -4.7519 -0.6112 12 6 1.9613 -6.0692 -0.6421 13 7 2.4415 -6.3661 0.7143 14 6 2.1730 -7.5532 1.2932 15 8 1.5293 -8.3904 0.6925 16 6 2.6643 -7.8380 2.6638 17 6 2.0250 -8.8236 3.4285 18 6 2.4727 -9.0985 4.6896 19 6 3.5690 -8.3673 5.1797 20 6 4.0844 -8.5953 6.4693 21 6 5.1510 -7.8465 6.8783 22 6 5.6960 -6.8898 6.0229 23 7 5.2141 -6.6812 4.8226 24 6 4.1705 -7.3793 4.3585 25 7 3.6884 -7.1538 3.1354 26 6 3.2148 -5.3421 1.4298 27 6 2.4241 -4.0351 1.4354 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.9679 -3.5503 -0.5921 31 1 0.9003 -4.4709 -1.6266 32 1 0.2809 -4.8763 -0.0076 33 1 2.8111 -5.9742 -1.3181 34 1 1.3109 -6.8744 -0.9840 35 1 1.1850 -9.3664 3.0208 36 1 1.9972 -9.8569 5.2939 37 1 3.6482 -9.3409 7.1177 38 1 5.5717 -7.9958 7.8616 39 1 6.5390 -6.3045 6.3591 40 1 3.3892 -5.6664 2.4558 41 1 4.1690 -5.1866 0.9263 42 1 3.0300 -3.2438 1.8767 43 1 1.5137 -4.1660 2.0203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996618900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:42 Heat of formation + Delta-G solvation = 70.920726 kcal Electronic energy + Delta-G solvation = -27035.030000 eV Core-core repulsion = 23274.449290 eV Total energy + Delta-G solvation = -3760.580710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69457 -40.04599 -38.00683 -37.24857 -34.77271 -34.25468 -32.19626 -31.49764 -31.31764 -30.48319 -29.18445 -26.29646 -24.85658 -24.38005 -23.18363 -22.69821 -22.51942 -20.82868 -19.53513 -18.88034 -17.95423 -17.42531 -17.00470 -16.48106 -15.89491 -15.73096 -15.16915 -14.82167 -14.76143 -14.58585 -14.28505 -13.81551 -13.58626 -13.48999 -13.43403 -13.36053 -12.99683 -12.65217 -12.30393 -12.12356 -11.88819 -11.64086 -11.43589 -10.97845 -10.86365 -10.74893 -10.64358 -10.37390 -10.18514 -10.07460 -9.76152 -9.63663 -9.34361 -9.30566 -9.07118 -8.71848 -8.45162 -6.91692 -5.73460 -3.02000 -0.30778 0.13305 1.47375 2.08152 2.87362 2.92932 3.37369 3.45787 3.50975 3.52597 3.76576 3.99098 4.18205 4.21433 4.33903 4.40945 4.61728 4.63400 4.83928 4.93406 5.21426 5.27235 5.37692 5.40605 5.45757 5.49556 5.59791 5.68352 5.70853 5.76407 5.78837 5.93710 6.05540 6.13442 6.25493 6.37135 6.48312 6.56835 6.58814 6.72919 6.93870 6.99505 7.13790 7.48778 7.70384 7.73530 8.09895 8.45093 9.56198 10.14253 10.49248 11.49304 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003161 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.041895 B = 8856.669499 C =10363.446410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.138 4.138 12 C 0.113 3.887 13 N -0.576 5.576 14 C 0.564 3.436 15 O -0.539 6.539 16 C 0.152 3.848 17 C -0.129 4.129 18 C -0.046 4.046 19 C -0.144 4.144 20 C -0.046 4.046 21 C -0.174 4.174 22 C 0.160 3.840 23 N -0.456 5.456 24 C 0.296 3.704 25 N -0.421 5.421 26 C 0.077 3.923 27 C -0.150 4.150 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -21.840 14.269 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.177 4.177 12 C -0.009 4.009 13 N -0.306 5.306 14 C 0.349 3.651 15 O -0.417 6.417 16 C -0.004 4.004 17 C -0.150 4.150 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.194 4.194 22 C -0.018 4.018 23 N -0.165 5.165 24 C 0.058 3.942 25 N -0.134 5.134 26 C -0.046 4.046 27 C -0.191 4.191 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.149 0.851 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.108 -20.803 12.791 26.064 hybrid contribution -0.566 -0.060 1.194 1.323 sum 8.542 -20.863 13.985 26.530 Atomic orbital electron populations 1.69664 1.05116 1.25577 1.57886 1.24739 0.95497 0.97663 1.03148 0.86206 0.78681 0.83932 0.77499 1.21757 1.21851 1.20733 1.19254 0.91010 0.84112 1.42401 0.91145 1.42437 1.05763 0.99751 1.88537 1.20214 0.94359 0.85966 0.92757 1.22200 0.99158 0.94029 1.02303 1.21747 0.99020 0.98259 0.81923 1.48108 1.51850 1.14264 1.16402 1.17856 0.80238 0.82758 0.84203 1.90768 1.40924 1.46516 1.63460 1.21559 0.91805 0.92048 0.95025 1.21810 1.01341 0.97555 0.94251 1.21460 0.93467 0.97148 0.95193 1.19729 0.98761 0.99596 0.96811 1.21500 0.94565 0.97562 0.93654 1.22073 0.97744 0.97604 1.01974 1.23183 0.97166 0.93602 0.87812 1.67675 1.09508 1.24342 1.14945 1.19445 0.92611 0.91636 0.90493 1.67689 1.11237 1.21973 1.12528 1.22885 0.93568 0.87506 1.00594 1.22600 0.99929 0.95439 1.01163 0.93574 0.78340 0.93368 0.90398 0.91841 0.91076 0.89194 0.82670 0.83218 0.83813 0.83755 0.81337 0.85085 0.91438 0.90689 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.44 5.12 -53.39 -0.27 -18.71 16 10 C 0.18 3.60 2.73 -67.89 -0.19 3.41 16 11 C -0.14 -2.39 5.55 -26.61 -0.15 -2.53 16 12 C 0.11 1.72 6.43 -3.71 -0.02 1.69 16 13 N -0.58 -9.14 2.98 -173.95 -0.52 -9.66 16 14 C 0.56 8.89 7.61 -12.10 -0.09 8.79 16 15 O -0.54 -9.31 15.91 5.37 0.09 -9.22 16 16 C 0.15 2.09 6.46 -82.95 -0.54 1.55 16 17 C -0.13 -1.36 9.53 -39.44 -0.38 -1.74 16 18 C -0.05 -0.37 9.89 -39.28 -0.39 -0.76 16 19 C -0.14 -1.38 5.75 -106.68 -0.61 -1.99 16 20 C -0.05 -0.29 9.90 -39.24 -0.39 -0.68 16 21 C -0.17 -0.97 10.04 -39.74 -0.40 -1.37 16 22 C 0.16 1.26 11.14 -17.46 -0.19 1.06 16 23 N -0.46 -5.64 10.43 -12.59 -0.13 -5.77 16 24 C 0.30 3.82 7.62 -157.90 -1.20 2.61 16 25 N -0.42 -6.07 6.38 -9.18 -0.06 -6.13 16 26 C 0.08 1.24 5.94 -3.93 -0.02 1.22 16 27 C -0.15 -2.83 5.64 -26.83 -0.15 -2.99 16 28 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.38 10.40 7.80 -40.82 -0.32 10.09 16 30 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 35 H 0.16 1.43 7.77 -52.48 -0.41 1.02 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.14 0.42 8.06 -52.48 -0.42 -0.01 16 38 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 39 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 2.15 4.00 -79.57 -0.32 1.83 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.96 356.29 -10.39 -45.36 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.60 Total: 7.99 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.97 Total: 0.99 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.26 Total: -68.11 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.96 -10.39 -45.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996618900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.276 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds