Wall clock time and date at job start Tue Mar 31 2020 14:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47004 * 270.00354 * 3 2 1 5 5 H 1.48498 * 109.46909 * 29.99809 * 3 2 1 6 6 H 1.48497 * 109.46925 * 150.00053 * 3 2 1 7 7 C 1.38814 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99311 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99687 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46153 * 204.99774 * 10 9 7 12 12 C 1.53191 * 109.31222 * 178.62940 * 11 10 9 13 13 N 1.46921 * 108.77588 * 54.64018 * 12 11 10 14 14 C 1.34775 * 120.63025 * 126.36887 * 13 12 11 15 15 O 1.21491 * 120.00483 * 0.07358 * 14 13 12 16 16 C 1.48356 * 119.99657 * 180.02562 * 14 13 12 17 17 C 1.40173 * 119.20240 * 157.93481 * 16 14 13 18 18 C 1.36623 * 119.71019 * 179.70481 * 17 16 14 19 19 C 1.40598 * 118.20574 * 0.27326 * 18 17 16 20 20 C 1.40732 * 121.37885 * 179.97438 * 19 18 17 21 21 C 1.36590 * 118.13209 * 180.02562 * 20 19 18 22 22 C 1.39424 * 119.84896 * 359.97438 * 21 20 19 23 23 N 1.31017 * 121.83993 * 359.97438 * 22 21 20 24 24 C 1.33860 * 121.42396 * 0.02562 * 23 22 21 25 25 N 1.31881 * 119.20712 * 338.21737 * 16 14 13 26 26 C 1.46930 * 118.73605 * 306.63737 * 13 12 11 27 27 C 1.52759 * 109.00565 * 53.31467 * 26 13 12 28 28 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00592 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46220 * 324.97718 * 10 9 7 31 31 H 1.09002 * 109.49466 * 58.68170 * 11 10 9 32 32 H 1.08995 * 109.52733 * 298.60023 * 11 10 9 33 33 H 1.09001 * 109.58584 * 294.84831 * 12 11 10 34 34 H 1.09003 * 109.70252 * 174.49964 * 12 11 10 35 35 H 1.08005 * 120.14518 * 359.97100 * 17 16 14 36 36 H 1.07994 * 120.89456 * 180.25947 * 18 17 16 37 37 H 1.08003 * 120.93196 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.07001 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.07864 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.58395 * 173.14145 * 26 13 12 41 41 H 1.08996 * 109.58675 * 293.57123 * 26 13 12 42 42 H 1.08997 * 109.56639 * 185.55184 * 27 26 13 43 43 H 1.09005 * 109.36214 * 65.49603 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.1799 -4.7519 -0.6112 12 6 1.9613 -6.0692 -0.6421 13 7 2.4415 -6.3661 0.7143 14 6 2.1730 -7.5532 1.2932 15 8 1.5293 -8.3904 0.6925 16 6 2.6643 -7.8380 2.6638 17 6 2.0250 -8.8236 3.4285 18 6 2.4727 -9.0985 4.6896 19 6 3.5690 -8.3673 5.1797 20 6 4.0844 -8.5953 6.4693 21 6 5.1510 -7.8465 6.8783 22 6 5.6960 -6.8898 6.0229 23 7 5.2141 -6.6812 4.8226 24 6 4.1705 -7.3793 4.3585 25 7 3.6884 -7.1538 3.1354 26 6 3.2148 -5.3421 1.4298 27 6 2.4241 -4.0351 1.4354 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.9679 -3.5503 -0.5921 31 1 0.9003 -4.4709 -1.6266 32 1 0.2809 -4.8763 -0.0076 33 1 2.8111 -5.9742 -1.3181 34 1 1.3109 -6.8744 -0.9840 35 1 1.1850 -9.3664 3.0208 36 1 1.9972 -9.8569 5.2939 37 1 3.6482 -9.3409 7.1177 38 1 5.5717 -7.9958 7.8616 39 1 6.5390 -6.3045 6.3591 40 1 3.3892 -5.6664 2.4558 41 1 4.1690 -5.1866 0.9263 42 1 3.0300 -3.2438 1.8767 43 1 1.5137 -4.1660 2.0203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996618900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:41 Heat of formation + Delta-G solvation = 47.972455 kcal Electronic energy + Delta-G solvation = -27036.025112 eV Core-core repulsion = 23274.449290 eV Total energy + Delta-G solvation = -3761.575822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48465 -41.15856 -39.06622 -38.45144 -36.27212 -35.22059 -33.87896 -32.57414 -32.09041 -31.67648 -30.97453 -27.39148 -26.19452 -25.34731 -24.49806 -24.04382 -23.54235 -22.14083 -20.84044 -19.70860 -19.21382 -18.85078 -18.14692 -17.48622 -16.95041 -16.76000 -16.71405 -15.84678 -15.78789 -15.56935 -15.44412 -15.25222 -15.17978 -14.91430 -14.52562 -14.37555 -14.00463 -13.94366 -13.38503 -13.26798 -13.09890 -12.87808 -12.84912 -12.69590 -12.29641 -12.19704 -12.09171 -12.07724 -11.82541 -11.62090 -11.36493 -11.13567 -10.83416 -10.10366 -9.98666 -9.79303 -9.75374 -9.00680 -7.94880 -5.23918 -1.00744 -0.55085 0.81464 1.25176 1.46301 1.48111 1.56588 1.75205 2.01174 2.51466 2.56056 3.01165 3.24634 3.37310 3.38455 3.62450 3.71630 3.77331 3.86931 3.93795 4.02704 4.10327 4.15868 4.24072 4.35649 4.39290 4.47460 4.57761 4.65076 4.75756 4.78143 4.84428 4.94164 4.97892 4.98223 5.11102 5.13830 5.21239 5.31038 5.42835 5.50503 5.55423 5.66219 6.11566 6.25694 6.27009 6.84126 7.05803 7.32701 8.07196 8.31855 9.28743 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.003161 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.041895 B = 8856.669499 C =10363.446410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.174 3.826 11 C -0.126 4.126 12 C 0.118 3.882 13 N -0.583 5.583 14 C 0.563 3.437 15 O -0.559 6.559 16 C 0.126 3.874 17 C -0.145 4.145 18 C -0.021 4.021 19 C -0.154 4.154 20 C -0.040 4.040 21 C -0.163 4.163 22 C 0.159 3.841 23 N -0.511 5.511 24 C 0.264 3.736 25 N -0.455 5.455 26 C 0.091 3.909 27 C -0.136 4.136 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.164 0.836 36 H 0.199 0.801 37 H 0.189 0.811 38 H 0.189 0.811 39 H 0.196 0.804 40 H 0.138 0.862 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -23.891 17.109 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.065 3.935 11 C -0.164 4.164 12 C -0.004 4.004 13 N -0.313 5.313 14 C 0.350 3.650 15 O -0.438 6.438 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.047 4.047 19 C -0.159 4.159 20 C -0.066 4.066 21 C -0.182 4.182 22 C -0.017 4.017 23 N -0.221 5.221 24 C 0.027 3.973 25 N -0.169 5.169 26 C -0.032 4.032 27 C -0.177 4.177 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.181 0.819 36 H 0.216 0.784 37 H 0.206 0.794 38 H 0.206 0.794 39 H 0.212 0.788 40 H 0.154 0.846 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.626 -22.897 15.629 29.690 hybrid contribution -0.895 0.478 0.501 1.131 sum 9.732 -22.419 16.130 29.283 Atomic orbital electron populations 1.69825 1.06644 1.25991 1.59738 1.25561 0.96369 1.01074 1.03876 0.85152 0.77706 0.79533 0.77471 1.21320 1.22251 1.19446 1.19622 0.91408 0.85182 1.40790 0.90671 1.42632 1.05361 1.00941 1.88655 1.20417 0.94383 0.84996 0.93696 1.22044 0.98398 0.94131 1.01875 1.21713 0.99444 0.96967 0.82290 1.48140 1.52075 1.14489 1.16567 1.18251 0.79537 0.82158 0.85077 1.90732 1.41838 1.46939 1.64322 1.21336 0.93010 0.94052 0.94457 1.21938 1.01922 0.97374 0.95338 1.21974 0.92023 0.96554 0.94152 1.20041 0.99038 0.98808 0.98011 1.22035 0.94194 0.97984 0.92355 1.22544 0.96867 0.95715 1.03055 1.23865 0.97224 0.93851 0.86790 1.67631 1.10787 1.26277 1.17427 1.19686 0.93650 0.93347 0.90616 1.67326 1.11999 1.23307 1.14250 1.22729 0.92940 0.86059 1.01456 1.22379 0.99268 0.96515 0.99566 0.94076 0.79732 0.93434 0.90080 0.92878 0.89499 0.88563 0.81863 0.78409 0.79405 0.79425 0.78757 0.84565 0.91156 0.92435 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.90 13.06 21.65 0.28 -60.61 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 8 H 0.08 4.13 7.83 -2.92 -0.02 4.11 16 9 N -0.74 -38.70 5.12 -322.82 -1.65 -40.35 16 10 C 0.17 7.26 2.73 45.02 0.12 7.38 16 11 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 12 C 0.12 3.63 6.43 86.36 0.56 4.19 16 13 N -0.58 -19.00 2.98 -822.57 -2.45 -21.45 16 14 C 0.56 18.24 7.61 86.94 0.66 18.90 16 15 O -0.56 -19.67 15.91 -3.69 -0.06 -19.73 16 16 C 0.13 3.54 6.46 42.30 0.27 3.81 16 17 C -0.14 -2.93 9.53 22.36 0.21 -2.72 16 18 C -0.02 -0.28 9.89 22.47 0.22 -0.05 16 19 C -0.15 -2.56 5.75 -21.20 -0.12 -2.68 16 20 C -0.04 -0.31 9.90 22.49 0.22 -0.09 16 21 C -0.16 -1.08 10.04 22.17 0.22 -0.86 16 22 C 0.16 2.13 11.14 85.10 0.95 3.08 16 23 N -0.51 -12.48 10.43 -193.76 -2.02 -14.50 16 24 C 0.26 6.76 7.62 135.12 1.03 7.78 16 25 N -0.45 -13.53 6.38 -182.97 -1.17 -14.70 16 26 C 0.09 3.06 5.94 86.22 0.51 3.57 16 27 C -0.14 -5.37 5.64 30.53 0.17 -5.20 16 28 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.37 20.99 7.80 -92.71 -0.72 20.26 16 30 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.80 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 2.88 7.00 -2.39 -0.02 2.87 16 35 H 0.16 2.88 7.77 -2.91 -0.02 2.86 16 36 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 37 H 0.19 -0.21 8.06 -2.91 -0.02 -0.23 16 38 H 0.19 -0.37 8.06 -2.91 -0.02 -0.40 16 39 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.14 4.70 4.00 -56.97 -0.23 4.47 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -80.39 356.29 1.57 -78.82 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.11 Total: 27.29 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.51 Total: 16.02 kcal Atomic # 7 Polarization: -144.61 SS G_CDS: -7.01 Total: -151.62 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -80.39 1.57 -78.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996618900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.788 kcal (2) G-P(sol) polarization free energy of solvation -80.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds