Wall clock time and date at job start Tue Mar 31 2020 15:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47143 * 239.99558 * 3 2 1 5 5 H 1.48503 * 109.47453 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47338 * 119.99839 * 3 2 1 7 7 C 1.38814 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00403 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00296 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.46335 * 154.99999 * 10 9 7 12 12 C 1.53188 * 109.31250 * 181.37125 * 11 10 9 13 13 N 1.46925 * 108.77858 * 305.36604 * 12 11 10 14 14 C 1.34780 * 120.62698 * 233.58791 * 13 12 11 15 15 O 1.21537 * 120.00447 * 5.77259 * 14 13 12 16 16 C 1.47867 * 119.99536 * 185.77491 * 14 13 12 17 17 C 1.38956 * 121.42673 * 53.85879 * 16 14 13 18 18 N 1.32575 * 120.33893 * 180.02562 * 17 16 14 19 19 N 1.28383 * 123.43503 * 359.96961 * 18 17 16 20 20 C 1.33459 * 121.85390 * 0.02562 * 19 18 17 21 21 C 1.40588 * 121.74638 * 179.97438 * 20 19 18 22 22 C 1.36118 * 119.61339 * 180.27380 * 21 20 19 23 23 C 1.39373 * 121.12836 * 359.45542 * 22 21 20 24 24 C 1.36343 * 120.88619 * 0.57490 * 23 22 21 25 25 C 1.39861 * 119.49795 * 359.70638 * 24 23 22 26 26 C 1.46925 * 118.73707 * 53.85909 * 13 12 11 27 27 C 1.53042 * 109.44924 * 275.06209 * 10 9 7 28 28 H 0.97004 * 120.00085 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00067 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46049 * 35.02725 * 10 9 7 31 31 H 1.08994 * 109.49627 * 61.41965 * 11 10 9 32 32 H 1.09001 * 109.49635 * 301.32265 * 11 10 9 33 33 H 1.09005 * 109.58542 * 185.57280 * 12 11 10 34 34 H 1.09005 * 109.70646 * 65.22466 * 12 11 10 35 35 H 1.07999 * 119.82490 * 359.97427 * 17 16 14 36 36 H 1.08001 * 120.19394 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.43129 * 179.75135 * 22 21 20 38 38 H 1.07997 * 119.55564 * 180.30988 * 23 22 21 39 39 H 1.07994 * 120.25283 * 179.73419 * 24 23 22 40 40 H 1.08999 * 109.58472 * 65.92839 * 26 13 12 41 41 H 1.09003 * 109.58405 * 186.34846 * 26 13 12 42 42 H 1.09000 * 109.49685 * 298.56869 * 27 10 9 43 43 H 1.08995 * 109.49646 * 58.67121 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.1802 -4.7523 0.6104 12 6 1.9616 -6.0695 0.6401 13 7 2.4409 -6.3659 -0.7168 14 6 2.1726 -7.5531 -1.2958 15 8 1.4419 -8.3492 -0.7396 16 6 2.7675 -7.8869 -2.6077 17 6 4.1389 -7.8167 -2.8204 18 7 4.6491 -8.1205 -4.0057 19 7 3.9376 -8.4895 -5.0086 20 6 2.6096 -8.5953 -4.9292 21 6 1.8326 -8.9992 -6.0290 22 6 0.4803 -9.0871 -5.9012 23 6 -0.1498 -8.7940 -4.6930 24 6 0.5713 -8.3988 -3.6054 25 6 1.9624 -8.2923 -3.7031 26 6 3.2232 -5.3458 -1.4282 27 6 2.4230 -4.0345 -1.4369 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.9683 -3.5506 0.5904 31 1 0.2812 -4.8761 0.0068 32 1 0.9014 -4.4717 1.6261 33 1 1.3094 -6.8736 0.9811 34 1 2.8119 -5.9774 1.3159 35 1 4.7923 -7.5123 -2.0162 36 1 2.3055 -9.2344 -6.9711 37 1 -0.1141 -9.3937 -6.7491 38 1 -1.2240 -8.8770 -4.6185 39 1 0.0722 -8.1702 -2.6755 40 1 4.1743 -5.1932 -0.9181 41 1 3.4038 -5.6722 -2.4524 42 1 1.5121 -4.1652 -2.0212 43 1 3.0286 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997037998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:52 Heat of formation + Delta-G solvation = 62.723169 kcal Electronic energy + Delta-G solvation = -27241.321370 eV Core-core repulsion = 23480.385187 eV Total energy + Delta-G solvation = -3760.936183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85684 -40.02855 -38.18724 -37.55242 -34.72178 -34.09061 -32.15128 -31.97645 -31.11823 -30.51770 -29.34321 -26.45499 -24.95193 -24.64495 -23.43599 -23.14349 -22.32596 -20.62377 -19.47053 -18.90163 -18.63434 -17.55734 -17.11536 -16.44944 -15.93419 -15.55604 -15.40940 -15.01293 -14.90862 -14.65517 -14.21460 -13.94191 -13.83421 -13.61878 -13.46474 -13.18306 -12.77624 -12.71680 -12.53491 -12.20508 -12.07001 -11.69787 -11.19663 -11.14849 -11.02358 -10.94506 -10.89556 -10.68834 -10.52981 -10.32825 -9.93658 -9.79670 -9.74570 -9.72230 -8.98807 -8.78953 -8.68978 -7.05977 -5.84075 -3.13947 -0.54465 0.27334 1.27951 2.26680 2.46030 2.74898 3.38867 3.43730 3.44612 3.53805 3.62355 3.92416 3.96236 4.09268 4.41360 4.51397 4.52642 4.72771 4.79251 4.88205 5.02477 5.17527 5.19417 5.22682 5.25735 5.41554 5.42806 5.47792 5.54999 5.59190 5.73296 5.80130 5.82967 5.86362 5.96811 6.09573 6.20397 6.26204 6.28976 6.37402 6.45850 6.75963 6.91807 7.16722 7.61610 7.81462 8.26475 8.33878 9.45282 10.01512 10.36076 11.38243 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.002974 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.070523 B = 9414.035549 C = 9604.150134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.592 5.592 14 C 0.563 3.437 15 O -0.529 6.529 16 C -0.092 4.092 17 C 0.045 3.955 18 N -0.220 5.220 19 N -0.193 5.193 20 C 0.064 3.936 21 C -0.078 4.078 22 C -0.096 4.096 23 C -0.088 4.088 24 C -0.097 4.097 25 C -0.030 4.030 26 C 0.101 3.899 27 C -0.150 4.150 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -19.410 -8.223 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.068 3.932 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.324 5.324 14 C 0.349 3.651 15 O -0.406 6.406 16 C -0.108 4.108 17 C -0.107 4.107 18 N -0.072 5.072 19 N -0.047 5.047 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.116 4.116 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.039 4.039 26 C -0.022 4.022 27 C -0.191 4.191 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.195 0.805 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.948 -19.756 -8.728 21.956 hybrid contribution -1.054 1.242 0.805 1.817 sum 2.894 -18.514 -7.924 20.346 Atomic orbital electron populations 1.69651 1.05153 1.25897 1.57266 1.24753 0.95502 0.97752 1.02739 0.86278 0.78554 0.83513 0.77883 1.21231 1.21672 1.21196 1.19181 0.90955 0.84060 1.43278 0.91172 1.42412 1.05803 0.99644 1.88477 1.20167 0.94558 0.86177 0.92250 1.22213 0.99204 0.93859 1.02526 1.21748 0.99154 0.98503 0.81233 1.48145 1.53079 1.13967 1.17166 1.17838 0.81022 0.82301 0.83917 1.90803 1.36459 1.49054 1.64268 1.21172 0.95309 0.99363 0.94973 1.24296 0.92786 0.96362 0.97305 1.73042 1.30509 1.06788 0.96834 1.73605 1.03698 1.06644 1.20759 1.20325 0.92651 0.99791 0.93808 1.20815 0.93287 0.98252 0.97496 1.21105 0.94470 0.97913 0.98123 1.21216 1.01070 0.96212 0.92278 1.21126 0.91703 0.98450 1.00305 1.18618 0.95374 0.97293 0.92638 1.22156 0.94861 0.88883 0.96346 1.22771 0.99960 0.94334 1.02035 0.93383 0.78229 0.93200 0.91728 0.90180 0.89015 0.90849 0.80478 0.83569 0.84304 0.84449 0.83880 0.90568 0.90884 0.92178 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.14 5.12 -53.39 -0.27 -17.41 16 10 C 0.18 3.22 2.73 -67.89 -0.19 3.03 16 11 C -0.14 -2.12 5.55 -26.61 -0.15 -2.26 16 12 C 0.12 1.48 6.44 -3.71 -0.02 1.45 16 13 N -0.59 -7.61 2.97 -173.61 -0.51 -8.13 16 14 C 0.56 7.70 6.59 -12.32 -0.08 7.62 16 15 O -0.53 -8.46 15.32 5.33 0.08 -8.38 16 16 C -0.09 -1.17 4.66 -104.31 -0.49 -1.66 16 17 C 0.04 0.52 9.10 -16.96 -0.15 0.36 16 18 N -0.22 -2.88 11.47 30.73 0.35 -2.53 16 19 N -0.19 -2.55 11.52 32.21 0.37 -2.18 16 20 C 0.06 0.76 6.69 -84.87 -0.57 0.19 16 21 C -0.08 -0.69 10.01 -39.46 -0.39 -1.08 16 22 C -0.10 -0.69 9.94 -39.92 -0.40 -1.08 16 23 C -0.09 -0.73 9.96 -39.84 -0.40 -1.13 16 24 C -0.10 -1.08 9.30 -39.66 -0.37 -1.45 16 25 C -0.03 -0.38 5.77 -106.50 -0.61 -0.99 16 26 C 0.10 1.25 5.66 -3.49 -0.02 1.23 16 27 C -0.15 -2.41 5.67 -26.39 -0.15 -2.56 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 30 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.18 1.58 7.78 -52.49 -0.41 1.17 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.14 1.71 6.64 -52.49 -0.35 1.36 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.86 5.38 -51.93 -0.28 0.58 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -32.15 355.67 -8.64 -40.79 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.49 Total: 7.76 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.23 Total: -5.34 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.66 Total: -56.96 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.15 -8.64 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997037998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.517 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds