Wall clock time and date at job start Tue Mar 31 2020 15:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47143 * 239.99558 * 3 2 1 5 5 H 1.48503 * 109.47453 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47338 * 119.99839 * 3 2 1 7 7 C 1.38814 * 119.99558 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00403 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00296 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.46335 * 154.99999 * 10 9 7 12 12 C 1.53188 * 109.31250 * 181.37125 * 11 10 9 13 13 N 1.46925 * 108.77858 * 305.36604 * 12 11 10 14 14 C 1.34780 * 120.62698 * 233.58791 * 13 12 11 15 15 O 1.21537 * 120.00447 * 5.77259 * 14 13 12 16 16 C 1.47867 * 119.99536 * 185.77491 * 14 13 12 17 17 C 1.38956 * 121.42673 * 53.85879 * 16 14 13 18 18 N 1.32575 * 120.33893 * 180.02562 * 17 16 14 19 19 N 1.28383 * 123.43503 * 359.96961 * 18 17 16 20 20 C 1.33459 * 121.85390 * 0.02562 * 19 18 17 21 21 C 1.40588 * 121.74638 * 179.97438 * 20 19 18 22 22 C 1.36118 * 119.61339 * 180.27380 * 21 20 19 23 23 C 1.39373 * 121.12836 * 359.45542 * 22 21 20 24 24 C 1.36343 * 120.88619 * 0.57490 * 23 22 21 25 25 C 1.39861 * 119.49795 * 359.70638 * 24 23 22 26 26 C 1.46925 * 118.73707 * 53.85909 * 13 12 11 27 27 C 1.53042 * 109.44924 * 275.06209 * 10 9 7 28 28 H 0.97004 * 120.00085 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00067 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46049 * 35.02725 * 10 9 7 31 31 H 1.08994 * 109.49627 * 61.41965 * 11 10 9 32 32 H 1.09001 * 109.49635 * 301.32265 * 11 10 9 33 33 H 1.09005 * 109.58542 * 185.57280 * 12 11 10 34 34 H 1.09005 * 109.70646 * 65.22466 * 12 11 10 35 35 H 1.07999 * 119.82490 * 359.97427 * 17 16 14 36 36 H 1.08001 * 120.19394 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.43129 * 179.75135 * 22 21 20 38 38 H 1.07997 * 119.55564 * 180.30988 * 23 22 21 39 39 H 1.07994 * 120.25283 * 179.73419 * 24 23 22 40 40 H 1.08999 * 109.58472 * 65.92839 * 26 13 12 41 41 H 1.09003 * 109.58405 * 186.34846 * 26 13 12 42 42 H 1.09000 * 109.49685 * 298.56869 * 27 10 9 43 43 H 1.08995 * 109.49646 * 58.67121 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.1802 -4.7523 0.6104 12 6 1.9616 -6.0695 0.6401 13 7 2.4409 -6.3659 -0.7168 14 6 2.1726 -7.5531 -1.2958 15 8 1.4419 -8.3492 -0.7396 16 6 2.7675 -7.8869 -2.6077 17 6 4.1389 -7.8167 -2.8204 18 7 4.6491 -8.1205 -4.0057 19 7 3.9376 -8.4895 -5.0086 20 6 2.6096 -8.5953 -4.9292 21 6 1.8326 -8.9992 -6.0290 22 6 0.4803 -9.0871 -5.9012 23 6 -0.1498 -8.7940 -4.6930 24 6 0.5713 -8.3988 -3.6054 25 6 1.9624 -8.2923 -3.7031 26 6 3.2232 -5.3458 -1.4282 27 6 2.4230 -4.0345 -1.4369 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.9683 -3.5506 0.5904 31 1 0.2812 -4.8761 0.0068 32 1 0.9014 -4.4717 1.6261 33 1 1.3094 -6.8736 0.9811 34 1 2.8119 -5.9774 1.3159 35 1 4.7923 -7.5123 -2.0162 36 1 2.3055 -9.2344 -6.9711 37 1 -0.1141 -9.3937 -6.7491 38 1 -1.2240 -8.8770 -4.6185 39 1 0.0722 -8.1702 -2.6755 40 1 4.1743 -5.1932 -0.9181 41 1 3.4038 -5.6722 -2.4524 42 1 1.5121 -4.1652 -2.0212 43 1 3.0286 -3.2431 -1.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997037998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:51 Heat of formation + Delta-G solvation = 42.030353 kcal Electronic energy + Delta-G solvation = -27242.218678 eV Core-core repulsion = 23480.385187 eV Total energy + Delta-G solvation = -3761.833491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73860 -41.09979 -39.00626 -38.79052 -36.25573 -35.08615 -33.80895 -32.78268 -32.22515 -31.46369 -30.95670 -27.53547 -26.31650 -25.55510 -24.61738 -24.43012 -23.47767 -21.86514 -20.57896 -19.77174 -19.51662 -19.11354 -18.45455 -17.51918 -16.83471 -16.71529 -16.47290 -16.16045 -16.02586 -15.53603 -15.47243 -15.39230 -15.15404 -14.95329 -14.61756 -14.43841 -13.90525 -13.53446 -13.46214 -13.37089 -13.20053 -12.91396 -12.81528 -12.67340 -12.31779 -12.22869 -12.05121 -12.02527 -11.93177 -11.75823 -11.59920 -11.35444 -10.92398 -10.74325 -10.49950 -9.88258 -9.50802 -9.02145 -7.93911 -5.22720 -1.39876 -0.52818 0.47991 1.24806 1.48397 1.50384 1.56313 1.59909 1.78574 2.56373 2.72322 2.79447 2.97809 3.13094 3.27152 3.39258 3.65060 3.74752 3.76719 3.80876 3.97503 4.05555 4.08649 4.13278 4.26517 4.32470 4.33582 4.44401 4.55442 4.67249 4.72373 4.77898 4.79218 4.83397 4.92305 4.97430 5.01969 5.18375 5.22494 5.27134 5.41608 5.51584 5.53892 5.62936 6.09106 6.27726 6.75409 7.34030 7.36818 8.09523 8.31935 9.29455 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.002974 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.070523 B = 9414.035549 C = 9604.150134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.738 5.738 10 C 0.174 3.826 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.590 5.590 14 C 0.570 3.430 15 O -0.556 6.556 16 C -0.111 4.111 17 C 0.050 3.950 18 N -0.242 5.242 19 N -0.208 5.208 20 C 0.047 3.953 21 C -0.082 4.082 22 C -0.083 4.083 23 C -0.069 4.069 24 C -0.130 4.130 25 C -0.043 4.043 26 C 0.112 3.888 27 C -0.140 4.140 28 H 0.250 0.750 29 H 0.370 0.630 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.202 0.798 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.167 0.833 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -20.668 -9.344 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.167 4.167 12 C 0.001 3.999 13 N -0.321 5.321 14 C 0.357 3.643 15 O -0.435 6.435 16 C -0.127 4.127 17 C -0.102 4.102 18 N -0.093 5.093 19 N -0.061 5.061 20 C -0.083 4.083 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.088 4.088 24 C -0.149 4.149 25 C -0.052 4.052 26 C -0.011 4.011 27 C -0.181 4.181 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.219 0.781 36 H 0.186 0.814 37 H 0.199 0.801 38 H 0.184 0.816 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.891 -21.051 -9.857 23.753 hybrid contribution -1.417 1.514 1.073 2.334 sum 3.474 -19.537 -8.784 21.701 Atomic orbital electron populations 1.69813 1.06672 1.25998 1.59729 1.25533 0.96273 1.01047 1.03986 0.85268 0.77194 0.79425 0.78226 1.20455 1.22614 1.20272 1.19603 0.91535 0.85067 1.40698 0.90216 1.42648 1.05400 1.01034 1.88589 1.20425 0.94674 0.84765 0.93604 1.22066 0.98472 0.94335 1.01838 1.21716 0.99809 0.96714 0.81706 1.48146 1.52945 1.13877 1.17144 1.17935 0.80353 0.82049 0.83989 1.90781 1.37704 1.49967 1.65023 1.21120 0.95908 1.00990 0.94640 1.24579 0.92658 0.95564 0.97399 1.72983 1.30996 1.08006 0.97363 1.73502 1.04478 1.06943 1.21204 1.20693 0.92451 1.00459 0.94660 1.21212 0.93965 0.97637 0.97428 1.21572 0.94082 0.95926 0.98754 1.21670 1.02486 0.93088 0.91602 1.21133 0.91526 1.01221 1.01049 1.18858 0.96077 0.97355 0.92955 1.22098 0.94956 0.86548 0.97479 1.22537 0.99477 0.96133 0.99931 0.94175 0.79833 0.92520 0.93243 0.90260 0.88984 0.88317 0.78120 0.81366 0.80081 0.81555 0.85449 0.87736 0.89963 0.94122 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.06 21.65 0.28 -58.30 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.57 9.93 84.03 0.83 -11.74 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -35.39 5.12 -322.82 -1.65 -37.04 16 10 C 0.17 6.17 2.73 45.02 0.12 6.29 16 11 C -0.13 -3.86 5.55 30.67 0.17 -3.69 16 12 C 0.12 2.95 6.44 86.36 0.56 3.51 16 13 N -0.59 -14.47 2.97 -821.46 -2.44 -16.90 16 14 C 0.57 15.32 6.59 86.79 0.57 15.89 16 15 O -0.56 -17.81 15.32 -3.83 -0.06 -17.87 16 16 C -0.11 -2.77 4.66 -19.66 -0.09 -2.86 16 17 C 0.05 1.12 9.10 84.75 0.77 1.89 16 18 N -0.24 -6.20 11.47 -56.68 -0.65 -6.85 16 19 N -0.21 -5.37 11.52 -51.99 -0.60 -5.97 16 20 C 0.05 1.09 6.69 40.38 0.27 1.36 16 21 C -0.08 -1.25 10.01 22.35 0.22 -1.03 16 22 C -0.08 -0.90 9.94 22.05 0.22 -0.68 16 23 C -0.07 -0.97 9.96 22.10 0.22 -0.75 16 24 C -0.13 -2.85 9.30 22.22 0.21 -2.64 16 25 C -0.04 -1.07 5.77 -21.08 -0.12 -1.19 16 26 C 0.11 2.59 5.66 86.51 0.49 3.08 16 27 C -0.14 -4.44 5.67 30.82 0.17 -4.26 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.37 19.53 7.80 -92.71 -0.72 18.81 16 30 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.09 2.29 7.00 -2.38 -0.02 2.27 16 34 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.20 3.21 7.78 -2.91 -0.02 3.19 16 36 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.13 3.13 6.64 -2.91 -0.02 3.11 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 1.82 5.38 -2.39 -0.01 1.81 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.73 355.67 2.32 -69.40 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.33 Total: 27.10 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 5.08 Total: -0.62 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.06 Total: -125.07 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.06 Total: -17.87 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.73 2.32 -69.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997037998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.431 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds