Wall clock time and date at job start Tue Mar 31 2020 14:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 119.99679 * 2 1 4 4 H 1.48501 * 109.47198 * 270.00149 * 3 2 1 5 5 H 1.48501 * 109.46990 * 30.00142 * 3 2 1 6 6 H 1.48499 * 109.46991 * 150.00198 * 3 2 1 7 7 C 1.38807 * 120.00642 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99580 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00216 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99829 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45883 * 154.99446 * 10 9 7 12 12 C 1.53193 * 109.31313 * 181.38393 * 11 10 9 13 13 N 1.46926 * 108.77221 * 305.36635 * 12 11 10 14 14 C 1.34777 * 120.62914 * 233.57955 * 13 12 11 15 15 O 1.21555 * 119.99932 * 184.37670 * 14 13 12 16 16 C 1.47859 * 120.00284 * 4.37958 * 14 13 12 17 17 C 1.40621 * 119.75238 * 309.37426 * 16 14 13 18 18 C 1.35733 * 120.83252 * 179.97438 * 17 16 14 19 19 C 1.40706 * 120.08047 * 0.04220 * 18 17 16 20 20 N 1.33798 * 120.85154 * 179.97438 * 19 18 17 21 21 C 1.31331 * 119.76093 * 179.97438 * 20 19 18 22 22 C 1.39749 * 120.71179 * 0.28102 * 21 20 19 23 23 N 1.31284 * 120.67233 * 359.39714 * 22 21 20 24 24 C 1.33818 * 119.73530 * 0.61494 * 23 22 21 25 25 C 1.38412 * 119.75801 * 129.34806 * 16 14 13 26 26 C 1.46931 * 118.73956 * 53.86580 * 13 12 11 27 27 C 1.53041 * 109.45833 * 275.06274 * 10 9 7 28 28 H 0.96998 * 120.00608 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99916 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.45788 * 35.02748 * 10 9 7 31 31 H 1.09006 * 109.49334 * 61.43302 * 11 10 9 32 32 H 1.08998 * 109.50028 * 301.33811 * 11 10 9 33 33 H 1.08995 * 109.58430 * 185.58082 * 12 11 10 34 34 H 1.09001 * 109.70325 * 65.22246 * 12 11 10 35 35 H 1.07997 * 119.58228 * 359.95102 * 17 16 14 36 36 H 1.07999 * 119.95455 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.64330 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.66276 * 179.69744 * 22 21 20 39 39 H 1.08002 * 120.24790 * 0.02562 * 25 16 14 40 40 H 1.08996 * 109.59024 * 65.91498 * 26 13 12 41 41 H 1.08995 * 109.58828 * 186.35058 * 26 13 12 42 42 H 1.08996 * 109.49811 * 298.57244 * 27 10 9 43 43 H 1.09007 * 109.49337 * 58.66976 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2019 0.0000 10 6 4.1123 -2.4707 0.0000 11 6 5.4999 -2.2581 -0.6094 12 6 6.2500 -3.5935 -0.6395 13 7 6.2666 -4.1571 0.7173 14 6 7.4286 -4.5188 1.2965 15 8 7.4228 -5.0570 2.3864 16 6 8.7105 -4.2610 0.6061 17 6 8.8773 -4.6660 -0.7301 18 6 10.0444 -4.4399 -1.3851 19 6 11.1080 -3.7938 -0.7283 20 7 12.2653 -3.5636 -1.3589 21 6 13.2437 -2.9584 -0.7255 22 6 13.0921 -2.5562 0.6043 23 7 11.9641 -2.7652 1.2427 24 6 10.9526 -3.3803 0.6189 25 6 9.7372 -3.6224 1.2798 26 6 4.9917 -4.3249 1.4282 27 6 4.2564 -2.9762 1.4373 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3618 0.0004 30 1 3.5652 -3.2058 -0.5903 31 1 6.0566 -1.5416 -0.0053 32 1 5.3967 -1.8759 -1.6249 33 1 7.2725 -3.4306 -0.9800 34 1 5.7452 -4.2834 -1.3156 35 1 8.0666 -5.1635 -1.2416 36 1 10.1573 -4.7573 -2.4112 37 1 14.1770 -2.7732 -1.2365 38 1 13.9095 -2.0642 1.1104 39 1 9.6049 -3.3130 2.3060 40 1 4.3842 -5.0720 0.9177 41 1 5.1838 -4.6448 2.4523 42 1 4.8247 -2.2529 2.0221 43 1 3.2679 -3.1051 1.8784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997266276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:16 Heat of formation + Delta-G solvation = 59.281455 kcal Electronic energy + Delta-G solvation = -26841.396914 eV Core-core repulsion = 23080.311487 eV Total energy + Delta-G solvation = -3761.085427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86014 -40.38497 -37.86627 -37.24651 -35.21712 -34.72856 -32.27603 -31.65819 -31.07747 -30.63128 -29.79963 -26.33088 -25.35037 -24.56723 -23.30003 -22.62123 -22.42772 -20.89800 -19.75737 -19.05989 -18.31021 -17.55199 -17.45476 -16.63002 -16.08977 -15.55310 -15.27877 -15.12313 -14.86776 -14.59353 -14.44150 -14.15978 -14.05494 -13.59658 -13.36872 -13.05389 -12.81884 -12.58683 -12.50658 -12.26310 -12.15053 -12.09217 -11.95604 -11.80313 -11.10325 -11.05837 -10.95200 -10.58523 -10.36011 -10.13496 -9.91747 -9.63756 -9.56118 -9.33886 -9.04071 -8.97329 -8.67922 -7.33479 -5.81885 -3.18157 -0.30757 0.00690 1.44213 2.04671 2.58201 2.91362 3.33783 3.36665 3.42145 3.55760 3.56981 3.68596 3.80570 4.12090 4.35991 4.45470 4.54544 4.57065 4.72330 4.85345 4.92122 4.96298 5.15294 5.24867 5.28045 5.40035 5.42718 5.50993 5.53501 5.63406 5.67916 5.73348 5.79235 5.81561 6.03189 6.05957 6.10558 6.16672 6.38593 6.41108 6.75881 6.79556 6.88722 7.25570 7.27373 7.93268 7.96547 8.36989 9.14923 9.87631 10.06894 11.36262 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002839 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.915149 B = 9860.012554 C =10621.132603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.144 4.144 12 C 0.100 3.900 13 N -0.596 5.596 14 C 0.558 3.442 15 O -0.533 6.533 16 C -0.099 4.099 17 C -0.075 4.075 18 C -0.085 4.085 19 C 0.089 3.911 20 N -0.426 5.426 21 C 0.081 3.919 22 C 0.075 3.925 23 N -0.418 5.418 24 C 0.075 3.925 25 C -0.028 4.028 26 C 0.112 3.888 27 C -0.151 4.151 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.177 0.823 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.523 -8.861 -3.271 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.183 4.183 12 C -0.023 4.023 13 N -0.329 5.329 14 C 0.345 3.655 15 O -0.410 6.410 16 C -0.104 4.104 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.035 4.035 20 N -0.140 5.140 21 C -0.094 4.094 22 C -0.101 4.101 23 N -0.132 5.132 24 C -0.049 4.049 25 C -0.048 4.048 26 C -0.010 4.010 27 C -0.191 4.191 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.166 0.834 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.980 -9.280 -2.702 27.720 hybrid contribution 0.641 1.447 0.006 1.582 sum 26.621 -7.833 -2.696 27.880 Atomic orbital electron populations 1.69691 1.05108 1.25889 1.57322 1.24672 0.95214 0.97214 1.01926 0.86567 0.79214 0.85061 0.77753 1.21074 1.21733 1.20400 1.19058 0.80494 0.94705 1.43237 0.89133 1.42795 1.04045 1.01922 1.90244 1.20150 0.89983 0.89483 0.93015 1.22261 0.97538 0.96120 1.02400 1.22104 1.01747 0.95706 0.82708 1.48119 1.06486 1.61267 1.16985 1.18166 0.83331 0.78902 0.85109 1.90809 1.86953 1.42651 1.20636 1.19994 0.94989 1.00731 0.94683 1.21118 0.97921 0.97811 0.92697 1.20689 0.90755 0.98061 1.00880 1.19655 0.93622 0.98351 0.91871 1.68733 0.99452 1.09829 1.36000 1.24154 0.98567 0.93330 0.93385 1.24121 0.95853 0.96765 0.93390 1.68690 0.99644 1.08801 1.36065 1.19402 0.94606 0.98635 0.92260 1.21076 0.89006 0.94590 1.00123 1.21880 0.82505 0.98636 0.97939 1.22727 1.00609 0.94803 1.01007 0.93009 0.80665 0.92371 0.91827 0.90226 0.89463 0.90481 0.83667 0.83494 0.80604 0.80580 0.83352 0.91117 0.89323 0.92292 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 2 C 0.01 0.16 5.50 -17.44 -0.10 0.07 16 3 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.65 10.41 -15.06 -0.16 -6.81 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 N -0.75 -16.81 4.93 -53.38 -0.26 -17.08 16 10 C 0.18 3.20 2.73 -67.89 -0.19 3.02 16 11 C -0.14 -1.98 5.55 -26.61 -0.15 -2.13 16 12 C 0.10 1.08 5.34 -3.71 -0.02 1.06 16 13 N -0.60 -7.59 2.97 -173.61 -0.51 -8.11 16 14 C 0.56 7.60 7.21 -12.32 -0.09 7.51 16 15 O -0.53 -9.04 16.46 5.32 0.09 -8.95 16 16 C -0.10 -1.12 5.02 -105.00 -0.53 -1.64 16 17 C -0.08 -0.66 7.24 -39.58 -0.29 -0.94 16 18 C -0.08 -0.73 9.95 -39.55 -0.39 -1.12 16 19 C 0.09 0.93 6.59 -84.73 -0.56 0.37 16 20 N -0.43 -4.06 10.46 -10.74 -0.11 -4.17 16 21 C 0.08 0.53 11.21 -17.20 -0.19 0.34 16 22 C 0.07 0.52 11.21 -17.22 -0.19 0.32 16 23 N -0.42 -4.44 10.46 -10.81 -0.11 -4.55 16 24 C 0.07 0.85 6.58 -84.82 -0.56 0.29 16 25 C -0.03 -0.32 9.69 -38.69 -0.37 -0.70 16 26 C 0.11 1.55 6.45 -3.48 -0.02 1.53 16 27 C -0.15 -2.47 5.67 -26.39 -0.15 -2.62 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 30 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.79 4.50 -51.93 -0.23 0.55 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.15 0.95 7.01 -52.49 -0.37 0.58 16 36 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 38 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.29 7.03 -51.93 -0.36 0.92 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -35.04 353.79 -8.91 -43.95 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.44 Total: 6.01 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.95 Total: -1.46 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.23 Total: -61.92 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.04 -8.91 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997266276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.236 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds