Wall clock time and date at job start Tue Mar 31 2020 14:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 119.99679 * 2 1 4 4 H 1.48501 * 109.47198 * 270.00149 * 3 2 1 5 5 H 1.48501 * 109.46990 * 30.00142 * 3 2 1 6 6 H 1.48499 * 109.46991 * 150.00198 * 3 2 1 7 7 C 1.38807 * 120.00642 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99580 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00216 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99829 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45883 * 154.99446 * 10 9 7 12 12 C 1.53193 * 109.31313 * 181.38393 * 11 10 9 13 13 N 1.46926 * 108.77221 * 305.36635 * 12 11 10 14 14 C 1.34777 * 120.62914 * 233.57955 * 13 12 11 15 15 O 1.21555 * 119.99932 * 184.37670 * 14 13 12 16 16 C 1.47859 * 120.00284 * 4.37958 * 14 13 12 17 17 C 1.40621 * 119.75238 * 309.37426 * 16 14 13 18 18 C 1.35733 * 120.83252 * 179.97438 * 17 16 14 19 19 C 1.40706 * 120.08047 * 0.04220 * 18 17 16 20 20 N 1.33798 * 120.85154 * 179.97438 * 19 18 17 21 21 C 1.31331 * 119.76093 * 179.97438 * 20 19 18 22 22 C 1.39749 * 120.71179 * 0.28102 * 21 20 19 23 23 N 1.31284 * 120.67233 * 359.39714 * 22 21 20 24 24 C 1.33818 * 119.73530 * 0.61494 * 23 22 21 25 25 C 1.38412 * 119.75801 * 129.34806 * 16 14 13 26 26 C 1.46931 * 118.73956 * 53.86580 * 13 12 11 27 27 C 1.53041 * 109.45833 * 275.06274 * 10 9 7 28 28 H 0.96998 * 120.00608 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99916 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.45788 * 35.02748 * 10 9 7 31 31 H 1.09006 * 109.49334 * 61.43302 * 11 10 9 32 32 H 1.08998 * 109.50028 * 301.33811 * 11 10 9 33 33 H 1.08995 * 109.58430 * 185.58082 * 12 11 10 34 34 H 1.09001 * 109.70325 * 65.22246 * 12 11 10 35 35 H 1.07997 * 119.58228 * 359.95102 * 17 16 14 36 36 H 1.07999 * 119.95455 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.64330 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.66276 * 179.69744 * 22 21 20 39 39 H 1.08002 * 120.24790 * 0.02562 * 25 16 14 40 40 H 1.08996 * 109.59024 * 65.91498 * 26 13 12 41 41 H 1.08995 * 109.58828 * 186.35058 * 26 13 12 42 42 H 1.08996 * 109.49811 * 298.57244 * 27 10 9 43 43 H 1.09007 * 109.49337 * 58.66976 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2019 0.0000 10 6 4.1123 -2.4707 0.0000 11 6 5.4999 -2.2581 -0.6094 12 6 6.2500 -3.5935 -0.6395 13 7 6.2666 -4.1571 0.7173 14 6 7.4286 -4.5188 1.2965 15 8 7.4228 -5.0570 2.3864 16 6 8.7105 -4.2610 0.6061 17 6 8.8773 -4.6660 -0.7301 18 6 10.0444 -4.4399 -1.3851 19 6 11.1080 -3.7938 -0.7283 20 7 12.2653 -3.5636 -1.3589 21 6 13.2437 -2.9584 -0.7255 22 6 13.0921 -2.5562 0.6043 23 7 11.9641 -2.7652 1.2427 24 6 10.9526 -3.3803 0.6189 25 6 9.7372 -3.6224 1.2798 26 6 4.9917 -4.3249 1.4282 27 6 4.2564 -2.9762 1.4373 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3618 0.0004 30 1 3.5652 -3.2058 -0.5903 31 1 6.0566 -1.5416 -0.0053 32 1 5.3967 -1.8759 -1.6249 33 1 7.2725 -3.4306 -0.9800 34 1 5.7452 -4.2834 -1.3156 35 1 8.0666 -5.1635 -1.2416 36 1 10.1573 -4.7573 -2.4112 37 1 14.1770 -2.7732 -1.2365 38 1 13.9095 -2.0642 1.1104 39 1 9.6049 -3.3130 2.3060 40 1 4.3842 -5.0720 0.9177 41 1 5.1838 -4.6448 2.4523 42 1 4.8247 -2.2529 2.0221 43 1 3.2679 -3.1051 1.8784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997266276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:15 Heat of formation + Delta-G solvation = 34.295088 kcal Electronic energy + Delta-G solvation = -26842.480404 eV Core-core repulsion = 23080.311487 eV Total energy + Delta-G solvation = -3762.168917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53731 -41.39329 -39.00667 -38.14640 -36.31703 -35.85649 -33.98987 -32.72715 -31.82181 -31.70854 -31.27429 -27.28695 -26.40745 -25.53476 -24.36985 -24.01298 -23.38999 -22.10391 -20.91049 -19.97827 -19.54178 -18.90181 -18.21534 -17.56057 -17.05386 -16.72667 -16.38416 -16.05949 -15.89965 -15.76063 -15.38663 -15.27660 -15.04078 -14.90358 -14.61309 -14.47343 -14.14512 -13.70575 -13.57591 -13.34247 -12.94842 -12.94748 -12.84802 -12.82370 -12.74262 -12.58103 -12.21082 -12.14673 -11.93948 -11.78286 -11.49888 -11.07857 -10.94531 -10.18145 -10.04324 -9.84424 -9.68920 -9.31484 -8.01803 -5.34929 -0.98314 -0.63216 0.73221 1.27139 1.37189 1.39837 1.46908 1.64486 1.97794 2.48120 2.89170 2.95694 3.08654 3.17093 3.29095 3.29530 3.53060 3.72836 3.79033 3.88887 3.96323 4.05981 4.11076 4.16317 4.29712 4.36753 4.41994 4.53733 4.64056 4.69072 4.69544 4.77815 4.81024 4.86230 4.92969 5.02328 5.08008 5.15953 5.24117 5.42745 5.49334 5.53564 5.78667 6.18899 6.22480 6.24724 6.65464 6.91290 7.08526 7.85159 8.02893 9.19647 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002839 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.915149 B = 9860.012554 C =10621.132603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.257 1.257 7 C -0.224 4.224 8 H 0.061 0.939 9 N -0.752 5.752 10 C 0.176 3.824 11 C -0.136 4.136 12 C 0.104 3.896 13 N -0.594 5.594 14 C 0.559 3.441 15 O -0.575 6.575 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.075 4.075 19 C 0.073 3.927 20 N -0.447 5.447 21 C 0.094 3.906 22 C 0.085 3.915 23 N -0.456 5.456 24 C 0.054 3.946 25 C -0.044 4.044 26 C 0.121 3.879 27 C -0.141 4.141 28 H 0.256 0.744 29 H 0.363 0.637 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.222 0.778 38 H 0.217 0.783 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.365 -8.798 -5.399 32.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.182 1.182 7 C -0.355 4.355 8 H 0.079 0.921 9 N -0.395 5.395 10 C 0.068 3.932 11 C -0.175 4.175 12 C -0.018 4.018 13 N -0.325 5.325 14 C 0.348 3.652 15 O -0.455 6.455 16 C -0.110 4.110 17 C -0.094 4.094 18 C -0.094 4.094 19 C -0.050 4.050 20 N -0.161 5.161 21 C -0.082 4.082 22 C -0.092 4.092 23 N -0.170 5.170 24 C -0.069 4.069 25 C -0.064 4.064 26 C -0.001 4.001 27 C -0.182 4.182 28 H 0.065 0.935 29 H 0.196 0.804 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.239 0.761 38 H 0.234 0.766 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 29.850 -9.256 -4.852 31.627 hybrid contribution -0.364 1.383 0.687 1.586 sum 29.487 -7.873 -4.165 30.802 Atomic orbital electron populations 1.69871 1.07077 1.26528 1.60025 1.25463 0.96033 1.01095 1.03045 0.85451 0.78399 0.80029 0.78098 1.20156 1.22731 1.18234 1.19036 0.82568 0.93393 1.40543 0.92133 1.42852 1.02490 1.03974 1.90151 1.20427 0.91807 0.87353 0.93630 1.22166 0.94904 0.97916 1.02484 1.22292 1.03150 0.94470 0.81896 1.48151 1.05774 1.60938 1.17656 1.18524 0.84154 0.77982 0.84539 1.90783 1.87571 1.44608 1.22542 1.19831 0.93528 1.01806 0.95837 1.21286 0.98961 0.97763 0.91394 1.20980 0.89968 0.96771 1.01721 1.19912 0.94694 0.98770 0.91621 1.68820 0.99756 1.11060 1.36442 1.24961 0.99209 0.90784 0.93259 1.24907 0.95480 0.95042 0.93758 1.68691 1.00849 1.10166 1.37318 1.19440 0.94702 0.99732 0.92995 1.21013 0.89991 0.95765 0.99678 1.21689 0.83123 0.97144 0.98171 1.22528 0.99547 0.96157 0.99931 0.93468 0.80387 0.92526 0.92431 0.88959 0.86995 0.87740 0.81072 0.81042 0.76149 0.76633 0.85064 0.89306 0.90267 0.93529 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 3 Si 0.95 45.18 27.74 68.60 1.90 47.08 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.26 -11.17 6.52 99.48 0.65 -10.53 16 7 C -0.22 -12.37 10.41 84.03 0.87 -11.50 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 9 N -0.75 -33.42 4.93 -322.80 -1.59 -35.01 16 10 C 0.18 5.99 2.73 45.02 0.12 6.11 16 11 C -0.14 -3.41 5.55 30.67 0.17 -3.24 16 12 C 0.10 1.91 5.34 86.36 0.46 2.37 16 13 N -0.59 -14.30 2.97 -821.45 -2.44 -16.73 16 14 C 0.56 15.01 7.21 86.79 0.63 15.64 16 15 O -0.57 -19.96 16.46 -3.89 -0.06 -20.02 16 16 C -0.11 -2.29 5.02 -20.11 -0.10 -2.39 16 17 C -0.07 -1.10 7.24 22.27 0.16 -0.94 16 18 C -0.08 -1.09 9.95 22.29 0.22 -0.87 16 19 C 0.07 1.37 6.59 40.32 0.27 1.64 16 20 N -0.45 -7.18 10.46 -187.89 -1.96 -9.14 16 21 C 0.09 0.87 11.21 85.13 0.95 1.83 16 22 C 0.08 0.92 11.21 85.14 0.95 1.87 16 23 N -0.46 -9.18 10.46 -188.12 -1.97 -11.15 16 24 C 0.05 1.18 6.58 40.25 0.27 1.44 16 25 C -0.04 -1.05 9.69 22.85 0.22 -0.83 16 26 C 0.12 3.29 6.45 86.51 0.56 3.85 16 27 C -0.14 -4.67 5.67 30.82 0.17 -4.49 16 28 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.36 15.73 5.66 -92.71 -0.52 15.21 16 30 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.11 1.61 4.50 -2.39 -0.01 1.60 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.17 1.56 7.01 -2.91 -0.02 1.54 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.22 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.34 7.03 -2.39 -0.02 2.32 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 2.17 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -80.34 353.79 1.05 -79.30 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.47 Total: 20.78 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.40 Total: 7.18 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -7.66 Total: -134.33 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Total: -80.34 1.05 -79.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997266276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.591 kcal (2) G-P(sol) polarization free energy of solvation -80.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds