Wall clock time and date at job start Tue Mar 31 2020 14:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47099 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47136 * 30.00211 * 3 2 1 6 6 H 1.48504 * 109.47067 * 149.99979 * 3 2 1 7 7 C 1.38809 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99711 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49927 * 325.06415 * 10 9 7 12 12 C 1.53044 * 109.49687 * 204.99462 * 10 9 7 13 13 C 1.53035 * 109.53571 * 178.65224 * 12 10 9 14 14 C 1.53192 * 109.34064 * 61.35529 * 13 12 10 15 15 N 1.46936 * 108.76747 * 305.40914 * 14 13 12 16 16 C 1.34775 * 120.60539 * 233.57325 * 15 14 13 17 17 O 1.21489 * 120.00294 * 172.76375 * 16 15 14 18 18 C 1.48358 * 119.99997 * 352.76672 * 16 15 14 19 19 C 1.40175 * 119.20228 * 164.54678 * 18 16 15 20 20 C 1.36620 * 119.70276 * 179.71786 * 19 18 16 21 21 C 1.40599 * 118.20890 * 0.53870 * 20 19 18 22 22 C 1.40740 * 121.37458 * 179.75352 * 21 20 19 23 23 C 1.36586 * 118.13167 * 179.97438 * 22 21 20 24 24 C 1.39426 * 119.84628 * 359.97438 * 23 22 21 25 25 N 1.31017 * 121.84338 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42311 * 359.97438 * 25 24 23 27 27 N 1.31882 * 119.20092 * 344.81714 * 18 16 15 28 28 C 1.46922 * 118.76629 * 53.55917 * 15 14 13 29 29 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00306 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.45737 * 58.63704 * 12 10 9 32 32 H 1.08994 * 109.46179 * 298.67289 * 12 10 9 33 33 H 1.09006 * 109.49828 * 181.31767 * 13 12 10 34 34 H 1.08996 * 109.50198 * 301.38259 * 13 12 10 35 35 H 1.08996 * 109.58999 * 65.16889 * 14 13 12 36 36 H 1.09001 * 109.58675 * 185.59363 * 14 13 12 37 37 H 1.07999 * 120.14766 * 0.02562 * 19 18 16 38 38 H 1.08002 * 120.89582 * 180.28877 * 20 19 18 39 39 H 1.07999 * 120.93230 * 359.96994 * 22 21 20 40 40 H 1.07997 * 120.07126 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.07797 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.59128 * 186.61972 * 28 15 14 43 43 H 1.09005 * 109.70395 * 66.26228 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9695 -3.5506 -0.5878 12 6 1.1812 -4.7529 -0.6090 13 6 1.9578 -6.0712 -0.6403 14 6 2.3191 -6.4812 0.7908 15 7 3.0375 -5.3721 1.4333 16 6 4.2407 -5.5741 2.0060 17 8 4.8842 -4.6292 2.4170 18 6 4.7793 -6.9505 2.1347 19 6 6.1396 -7.1284 2.4224 20 6 6.6452 -8.3913 2.5488 21 6 5.7709 -9.4781 2.3715 22 6 6.2218 -10.8067 2.4815 23 6 5.3154 -11.8117 2.2970 24 6 3.9864 -11.5034 2.0094 25 7 3.5705 -10.2652 1.9078 26 6 4.4053 -9.2325 2.0766 27 7 3.9677 -7.9770 1.9702 28 6 2.4200 -4.0389 1.4393 29 1 -0.4850 0.8401 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 0.9020 -4.4718 -1.6245 32 1 0.2816 -4.8756 -0.0060 33 1 1.3411 -6.8460 -1.0959 34 1 2.8698 -5.9426 -1.2231 35 1 1.4089 -6.6988 1.3495 36 1 2.9563 -7.3653 0.7678 37 1 6.7840 -6.2710 2.5485 38 1 7.6892 -8.5506 2.7747 39 1 7.2554 -11.0255 2.7054 40 1 5.6274 -12.8428 2.3747 41 1 3.2803 -12.3079 1.8655 42 1 3.1239 -3.3120 1.8445 43 1 1.5180 -4.0545 2.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999210333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:52 Heat of formation + Delta-G solvation = 70.985235 kcal Electronic energy + Delta-G solvation = -27029.274093 eV Core-core repulsion = 23268.696180 eV Total energy + Delta-G solvation = -3760.577913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69178 -39.94677 -38.00010 -37.13907 -34.79268 -34.19416 -32.33740 -31.48257 -31.30122 -30.99074 -28.22768 -26.42265 -24.90433 -24.28208 -23.82635 -22.97550 -21.73777 -20.93671 -19.49668 -18.87788 -17.87584 -17.39375 -17.02169 -16.40668 -15.81873 -15.72179 -15.16954 -14.84944 -14.70615 -14.46951 -14.24562 -14.01161 -13.62844 -13.53104 -13.44685 -13.33251 -12.74390 -12.53475 -12.30938 -12.24935 -12.11933 -11.57003 -11.41105 -11.03703 -10.84470 -10.77777 -10.50509 -10.31214 -10.15634 -10.04498 -9.76176 -9.64782 -9.35425 -9.31764 -9.03444 -8.91337 -8.27256 -6.95502 -5.74616 -3.04163 -0.32605 0.11784 1.45267 2.09619 2.96068 3.05344 3.37447 3.47698 3.52877 3.55440 3.77284 3.97387 4.17787 4.21259 4.32917 4.41000 4.62577 4.63029 4.84815 4.90583 5.19549 5.25095 5.33693 5.37725 5.44138 5.48765 5.55176 5.70189 5.75037 5.78042 5.90853 5.96942 6.08859 6.18952 6.25657 6.30112 6.36852 6.48268 6.56970 6.82314 6.88983 6.92894 7.07307 7.62124 7.70720 7.75777 8.26223 8.43741 9.55346 10.09913 10.45562 11.47694 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.002740 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.863562 B =10217.379467 C =11082.214674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.084 3.916 15 N -0.577 5.577 16 C 0.557 3.443 17 O -0.529 6.529 18 C 0.155 3.845 19 C -0.128 4.128 20 C -0.047 4.047 21 C -0.145 4.145 22 C -0.045 4.045 23 C -0.176 4.176 24 C 0.158 3.842 25 N -0.458 5.458 26 C 0.295 3.705 27 N -0.425 5.425 28 C 0.089 3.911 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.091 0.909 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 -28.118 4.206 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.039 4.039 15 N -0.308 5.308 16 C 0.342 3.658 17 O -0.406 6.406 18 C -0.002 4.002 19 C -0.149 4.149 20 C -0.074 4.074 21 C -0.150 4.150 22 C -0.072 4.072 23 C -0.196 4.196 24 C -0.019 4.019 25 N -0.167 5.167 26 C 0.057 3.943 27 N -0.139 5.139 28 C -0.035 4.035 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.110 0.890 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.137 -27.027 4.029 29.508 hybrid contribution 1.725 0.532 0.415 1.852 sum 12.862 -26.496 4.444 29.786 Atomic orbital electron populations 1.69664 1.05114 1.25713 1.57566 1.24748 0.95517 0.97735 1.02772 0.86189 0.78812 0.83739 0.77504 1.21717 1.21764 1.20591 1.19284 0.91119 0.83981 1.42829 0.91013 1.42388 1.05827 0.99579 1.88046 1.20478 0.94976 0.86472 0.92230 0.93110 1.21845 0.98754 0.94273 1.01634 1.21934 1.00481 0.97907 0.96684 1.22728 0.98465 0.90401 0.92271 1.48184 1.17648 1.11817 1.53140 1.17902 0.81889 0.86291 0.79736 1.90806 1.58130 1.41395 1.50232 1.21737 0.91086 0.93118 0.94211 1.21878 0.95414 0.99042 0.98517 1.21473 1.00010 0.91091 0.94784 1.19733 0.96081 0.95642 1.03556 1.21507 1.00542 0.90848 0.94270 1.22053 0.94763 1.01026 1.01765 1.23157 0.94367 0.93173 0.91203 1.67662 1.36680 0.98800 1.13513 1.19454 0.87150 0.91207 0.96451 1.67762 1.36261 0.97652 1.12177 1.22904 0.97906 0.81222 1.01469 0.93494 0.78045 0.91580 0.92028 0.91089 0.92143 0.91448 0.85371 0.82507 0.83246 0.83851 0.83822 0.81431 0.89020 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.72 -18.35 5.13 -53.31 -0.27 -18.62 16 10 C 0.17 3.54 2.92 -67.80 -0.20 3.34 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.18 5.36 -26.69 -0.14 -2.32 16 13 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 14 C 0.08 1.24 5.82 -3.71 -0.02 1.22 16 15 N -0.58 -9.99 2.97 -173.68 -0.52 -10.50 16 16 C 0.56 9.64 7.63 -12.10 -0.09 9.54 16 17 O -0.53 -10.59 15.81 5.38 0.09 -10.51 16 18 C 0.15 2.17 6.49 -82.95 -0.54 1.63 16 19 C -0.13 -1.39 9.53 -39.44 -0.38 -1.77 16 20 C -0.05 -0.38 9.89 -39.28 -0.39 -0.77 16 21 C -0.15 -1.32 5.75 -106.68 -0.61 -1.94 16 22 C -0.04 -0.26 9.90 -39.23 -0.39 -0.65 16 23 C -0.18 -0.85 10.04 -39.74 -0.40 -1.25 16 24 C 0.16 1.08 11.14 -17.46 -0.19 0.89 16 25 N -0.46 -5.14 10.43 -12.59 -0.13 -5.28 16 26 C 0.30 3.58 7.62 -157.90 -1.20 2.38 16 27 N -0.43 -5.90 6.33 -9.18 -0.06 -5.96 16 28 C 0.09 1.78 6.03 -3.71 -0.02 1.76 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.39 10.35 7.80 -40.82 -0.32 10.03 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.13 1.87 4.21 -73.88 -0.31 1.56 16 37 H 0.16 1.58 7.68 -52.49 -0.40 1.18 16 38 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.14 0.22 8.06 -52.49 -0.42 -0.21 16 41 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.09 2.07 7.00 -51.93 -0.36 1.71 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -34.94 356.23 -10.40 -45.34 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.59 Total: 7.37 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -4.98 Total: 2.59 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -0.25 Total: -68.11 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.94 -10.40 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999210333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.329 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds