Wall clock time and date at job start Tue Mar 31 2020 14:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47099 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47136 * 30.00211 * 3 2 1 6 6 H 1.48504 * 109.47067 * 149.99979 * 3 2 1 7 7 C 1.38809 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99711 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49927 * 325.06415 * 10 9 7 12 12 C 1.53044 * 109.49687 * 204.99462 * 10 9 7 13 13 C 1.53035 * 109.53571 * 178.65224 * 12 10 9 14 14 C 1.53192 * 109.34064 * 61.35529 * 13 12 10 15 15 N 1.46936 * 108.76747 * 305.40914 * 14 13 12 16 16 C 1.34775 * 120.60539 * 233.57325 * 15 14 13 17 17 O 1.21489 * 120.00294 * 172.76375 * 16 15 14 18 18 C 1.48358 * 119.99997 * 352.76672 * 16 15 14 19 19 C 1.40175 * 119.20228 * 164.54678 * 18 16 15 20 20 C 1.36620 * 119.70276 * 179.71786 * 19 18 16 21 21 C 1.40599 * 118.20890 * 0.53870 * 20 19 18 22 22 C 1.40740 * 121.37458 * 179.75352 * 21 20 19 23 23 C 1.36586 * 118.13167 * 179.97438 * 22 21 20 24 24 C 1.39426 * 119.84628 * 359.97438 * 23 22 21 25 25 N 1.31017 * 121.84338 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42311 * 359.97438 * 25 24 23 27 27 N 1.31882 * 119.20092 * 344.81714 * 18 16 15 28 28 C 1.46922 * 118.76629 * 53.55917 * 15 14 13 29 29 H 0.97002 * 120.00025 * 0.02562 * 1 2 3 30 30 H 0.96991 * 120.00306 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.45737 * 58.63704 * 12 10 9 32 32 H 1.08994 * 109.46179 * 298.67289 * 12 10 9 33 33 H 1.09006 * 109.49828 * 181.31767 * 13 12 10 34 34 H 1.08996 * 109.50198 * 301.38259 * 13 12 10 35 35 H 1.08996 * 109.58999 * 65.16889 * 14 13 12 36 36 H 1.09001 * 109.58675 * 185.59363 * 14 13 12 37 37 H 1.07999 * 120.14766 * 0.02562 * 19 18 16 38 38 H 1.08002 * 120.89582 * 180.28877 * 20 19 18 39 39 H 1.07999 * 120.93230 * 359.96994 * 22 21 20 40 40 H 1.07997 * 120.07126 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.07797 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.59128 * 186.61972 * 28 15 14 43 43 H 1.09005 * 109.70395 * 66.26228 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9695 -3.5506 -0.5878 12 6 1.1812 -4.7529 -0.6090 13 6 1.9578 -6.0712 -0.6403 14 6 2.3191 -6.4812 0.7908 15 7 3.0375 -5.3721 1.4333 16 6 4.2407 -5.5741 2.0060 17 8 4.8842 -4.6292 2.4170 18 6 4.7793 -6.9505 2.1347 19 6 6.1396 -7.1284 2.4224 20 6 6.6452 -8.3913 2.5488 21 6 5.7709 -9.4781 2.3715 22 6 6.2218 -10.8067 2.4815 23 6 5.3154 -11.8117 2.2970 24 6 3.9864 -11.5034 2.0094 25 7 3.5705 -10.2652 1.9078 26 6 4.4053 -9.2325 2.0766 27 7 3.9677 -7.9770 1.9702 28 6 2.4200 -4.0389 1.4393 29 1 -0.4850 0.8401 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 0.9020 -4.4718 -1.6245 32 1 0.2816 -4.8756 -0.0060 33 1 1.3411 -6.8460 -1.0959 34 1 2.8698 -5.9426 -1.2231 35 1 1.4089 -6.6988 1.3495 36 1 2.9563 -7.3653 0.7678 37 1 6.7840 -6.2710 2.5485 38 1 7.6892 -8.5506 2.7747 39 1 7.2554 -11.0255 2.7054 40 1 5.6274 -12.8428 2.3747 41 1 3.2803 -12.3079 1.8655 42 1 3.1239 -3.3120 1.8445 43 1 1.5180 -4.0545 2.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999210333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:51 Heat of formation + Delta-G solvation = 47.684623 kcal Electronic energy + Delta-G solvation = -27030.284483 eV Core-core repulsion = 23268.696180 eV Total energy + Delta-G solvation = -3761.588303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47480 -41.14429 -39.05469 -38.40764 -36.31594 -35.19638 -33.94546 -32.80253 -32.18436 -32.01403 -29.99282 -27.52230 -25.92197 -25.79337 -25.08608 -23.67860 -23.23447 -22.22391 -20.84820 -19.69111 -19.17724 -18.86210 -18.13609 -17.39972 -16.99533 -16.94213 -16.47560 -15.93989 -15.80172 -15.58498 -15.54284 -15.20877 -15.15246 -15.01102 -14.47972 -14.09510 -14.07758 -13.97189 -13.66712 -13.30851 -13.08213 -12.89605 -12.85752 -12.57460 -12.33318 -12.21309 -12.08756 -11.94466 -11.83119 -11.58459 -11.39959 -11.11894 -10.94178 -10.10253 -9.97118 -9.81837 -9.75049 -9.04858 -7.99225 -5.29311 -1.02238 -0.54534 0.82119 1.25654 1.43927 1.45727 1.54873 1.75703 2.03861 2.49837 2.53634 3.02653 3.27708 3.33661 3.38000 3.62408 3.71177 3.75806 3.92396 3.95670 4.02584 4.04045 4.18796 4.26842 4.33481 4.36709 4.48777 4.63375 4.67193 4.68661 4.79602 4.84013 4.95690 4.99835 5.04169 5.10327 5.15951 5.24370 5.32031 5.39504 5.43887 5.53771 5.65762 6.12237 6.22725 6.32276 6.86946 7.06145 7.29372 7.99913 8.26806 9.23508 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.002740 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.863562 B =10217.379467 C =11082.214674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.728 5.728 10 C 0.170 3.830 11 H 0.034 0.966 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.086 3.914 15 N -0.581 5.581 16 C 0.553 3.447 17 O -0.569 6.569 18 C 0.130 3.870 19 C -0.147 4.147 20 C -0.020 4.020 21 C -0.153 4.153 22 C -0.041 4.041 23 C -0.161 4.161 24 C 0.162 3.838 25 N -0.506 5.506 26 C 0.267 3.733 27 N -0.450 5.450 28 C 0.104 3.896 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.197 0.803 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.199 0.801 42 H 0.058 0.942 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.791 -32.373 4.327 35.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.061 3.939 11 H 0.052 0.948 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.035 4.035 15 N -0.312 5.312 16 C 0.340 3.660 17 O -0.448 6.448 18 C -0.024 4.024 19 C -0.168 4.168 20 C -0.046 4.046 21 C -0.158 4.158 22 C -0.067 4.067 23 C -0.180 4.180 24 C -0.015 4.015 25 N -0.216 5.216 26 C 0.029 3.971 27 N -0.164 5.164 28 C -0.021 4.021 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.214 0.786 39 H 0.204 0.796 40 H 0.206 0.794 41 H 0.216 0.784 42 H 0.076 0.924 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.447 -31.333 4.143 34.347 hybrid contribution 1.066 1.496 0.422 1.885 sum 14.512 -29.837 4.565 33.492 Atomic orbital electron populations 1.69803 1.06402 1.26224 1.59031 1.25530 0.96431 1.00924 1.03281 0.85181 0.77627 0.79602 0.77616 1.20975 1.21701 1.20054 1.19539 0.91127 0.85334 1.41794 0.91493 1.42502 1.05517 1.00511 1.88283 1.20590 0.94680 0.86055 0.92615 0.94767 1.21742 0.98430 0.94291 1.01069 1.21902 1.00483 0.96973 0.96573 1.22887 0.98510 0.89886 0.92209 1.48199 1.18150 1.11060 1.53776 1.18512 0.81240 0.87818 0.78463 1.90756 1.59128 1.43233 1.51681 1.21158 0.92424 0.91172 0.97605 1.21907 0.94064 1.00662 1.00138 1.21949 1.01801 0.89287 0.91558 1.20036 0.94891 0.97799 1.03042 1.22017 1.02759 0.88996 0.92893 1.22555 0.93394 1.03082 0.99005 1.23901 0.96354 0.92404 0.88802 1.67645 1.37843 1.00088 1.16025 1.19672 0.88958 0.90634 0.97808 1.67395 1.37091 0.98705 1.13203 1.22376 0.96891 0.82504 1.00360 0.93797 0.78990 0.91700 0.91625 0.87891 0.92295 0.91298 0.84311 0.82593 0.78579 0.79640 0.79418 0.78414 0.92360 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 13.06 21.65 0.28 -60.21 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 48.36 29.55 68.60 2.03 50.38 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.25 -14.53 9.93 84.03 0.83 -13.69 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.73 -38.96 5.13 -322.56 -1.65 -40.61 16 10 C 0.17 7.49 2.92 45.07 0.13 7.62 16 11 H 0.03 1.61 8.08 -2.39 -0.02 1.59 16 12 C -0.12 -4.10 5.36 30.62 0.16 -3.93 16 13 C -0.12 -3.43 6.08 30.67 0.19 -3.24 16 14 C 0.09 2.62 5.82 86.36 0.50 3.13 16 15 N -0.58 -21.37 2.97 -821.70 -2.44 -23.81 16 16 C 0.55 20.49 7.63 86.94 0.66 21.15 16 17 O -0.57 -24.62 15.81 -3.68 -0.06 -24.68 16 18 C 0.13 3.81 6.49 42.30 0.27 4.08 16 19 C -0.15 -3.18 9.53 22.36 0.21 -2.96 16 20 C -0.02 -0.26 9.89 22.47 0.22 -0.04 16 21 C -0.15 -2.32 5.75 -21.20 -0.12 -2.44 16 22 C -0.04 -0.25 9.90 22.50 0.22 -0.02 16 23 C -0.16 -0.67 10.04 22.17 0.22 -0.45 16 24 C 0.16 1.63 11.14 85.10 0.95 2.58 16 25 N -0.51 -10.55 10.43 -193.75 -2.02 -12.57 16 26 C 0.27 6.19 7.62 135.12 1.03 7.22 16 27 N -0.45 -12.71 6.33 -182.97 -1.16 -13.87 16 28 C 0.10 4.46 6.03 86.37 0.52 4.99 16 29 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.38 21.15 7.80 -92.72 -0.72 20.43 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.14 4.13 4.21 -45.72 -0.19 3.94 16 37 H 0.16 3.26 7.68 -2.91 -0.02 3.24 16 38 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.19 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.19 -0.82 8.06 -2.91 -0.02 -0.85 16 41 H 0.20 0.54 8.06 -2.91 -0.02 0.51 16 42 H 0.06 2.87 7.00 -2.39 -0.02 2.85 16 43 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -82.41 356.23 1.60 -80.81 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.14 Total: 24.23 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.48 Total: 20.32 kcal Atomic # 7 Polarization: -144.08 SS G_CDS: -6.99 Total: -151.07 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -82.41 1.60 -80.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999210333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.497 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds