Wall clock time and date at job start Tue Mar 31 2020 14:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00135 * 2 1 4 4 H 1.48503 * 109.47267 * 270.26988 * 3 2 1 5 5 H 1.48503 * 109.47317 * 30.27053 * 3 2 1 6 6 H 1.48502 * 109.47364 * 150.27157 * 3 2 1 7 7 C 1.38813 * 119.99841 * 180.26898 * 2 1 3 8 8 H 1.08004 * 120.00029 * 359.72776 * 7 2 1 9 9 N 1.36933 * 120.00208 * 179.72943 * 7 2 1 10 10 C 1.46498 * 120.00255 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.49917 * 34.93578 * 10 9 7 12 12 C 1.53038 * 109.49691 * 154.99936 * 10 9 7 13 13 C 1.53042 * 109.53732 * 181.31676 * 12 10 9 14 14 C 1.53196 * 109.31438 * 298.63695 * 13 12 10 15 15 N 1.46927 * 108.77628 * 54.62877 * 14 13 12 16 16 C 1.34776 * 120.62785 * 126.41279 * 15 14 13 17 17 O 1.21493 * 120.00221 * 179.84560 * 16 15 14 18 18 C 1.48350 * 120.00196 * 359.84977 * 16 15 14 19 19 C 1.40169 * 119.20743 * 203.12001 * 18 16 15 20 20 C 1.36624 * 119.71025 * 179.97438 * 19 18 16 21 21 C 1.40589 * 118.20739 * 0.02562 * 20 19 18 22 22 C 1.40736 * 121.38126 * 179.97438 * 21 20 19 23 23 C 1.36591 * 118.13419 * 180.02562 * 22 21 20 24 24 C 1.39426 * 119.84787 * 359.97438 * 23 22 21 25 25 N 1.31013 * 121.84095 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42182 * 359.97438 * 25 24 23 27 27 N 1.31888 * 119.20411 * 22.84917 * 18 16 15 28 28 C 1.46919 * 118.74113 * 306.39697 * 15 14 13 29 29 H 0.97005 * 120.00187 * 359.73510 * 1 2 3 30 30 H 0.96998 * 119.99844 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46360 * 301.33798 * 12 10 9 32 32 H 1.08997 * 109.46228 * 61.31212 * 12 10 9 33 33 H 1.08996 * 109.49987 * 58.58231 * 13 12 10 34 34 H 1.08999 * 109.49780 * 178.68659 * 13 12 10 35 35 H 1.08996 * 109.59102 * 174.42036 * 14 13 12 36 36 H 1.09003 * 109.58144 * 294.84951 * 14 13 12 37 37 H 1.07997 * 120.14569 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.89474 * 180.02562 * 20 19 18 39 39 H 1.08006 * 120.93226 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.07392 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.07713 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.59212 * 293.81611 * 28 15 14 43 43 H 1.09004 * 109.58925 * 173.38976 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4920 2.0497 -1.4001 5 1 1.4505 2.6510 0.7058 6 1 3.5506 1.4385 0.6943 7 6 2.0102 -1.2022 -0.0056 8 1 1.4702 -2.1375 -0.0056 9 7 3.3795 -1.2022 -0.0112 10 6 4.1120 -2.4709 -0.0178 11 1 3.5620 -3.2055 -0.6059 12 6 5.4972 -2.2579 -0.6325 13 6 6.2508 -3.5893 -0.6699 14 6 6.4311 -4.1098 0.7596 15 7 5.1141 -4.1798 1.4071 16 6 4.6902 -5.3240 1.9793 17 8 3.6001 -5.3684 2.5140 18 6 5.5546 -6.5294 1.9563 19 6 4.9673 -7.7950 2.0912 20 6 5.7537 -8.9121 2.0710 21 6 7.1408 -8.7455 1.9139 22 6 8.0128 -9.8497 1.8844 23 6 9.3488 -9.6114 1.7292 24 6 9.8102 -8.3016 1.6052 25 7 8.9953 -7.2761 1.6332 26 6 7.6748 -7.4379 1.7823 27 7 6.8567 -6.3848 1.8041 28 6 4.2681 -2.9786 1.4192 29 1 -0.4851 0.8401 0.0039 30 1 3.8645 -0.3622 -0.0109 31 1 5.3892 -1.8732 -1.6466 32 1 6.0556 -1.5415 -0.0300 33 1 5.6809 -4.3138 -1.2515 34 1 7.2282 -3.4413 -1.1291 35 1 6.8785 -5.1033 0.7332 36 1 7.0765 -3.4308 1.3169 37 1 3.8979 -7.8867 2.2106 38 1 5.3213 -9.8965 2.1729 39 1 7.6362 -10.8573 1.9817 40 1 10.0460 -10.4357 1.7019 41 1 10.8691 -8.1275 1.4827 42 1 4.7370 -2.2075 2.0303 43 1 3.2882 -3.2259 1.8278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999210344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:55 Heat of formation + Delta-G solvation = 74.956388 kcal Electronic energy + Delta-G solvation = -27086.289462 eV Core-core repulsion = 23325.883752 eV Total energy + Delta-G solvation = -3760.405710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71693 -39.99554 -38.05506 -37.22112 -34.87187 -34.29222 -32.36734 -31.52801 -31.34457 -31.17340 -28.72722 -26.48722 -24.93374 -24.35721 -23.68274 -22.98725 -21.63272 -20.97842 -19.64640 -18.91321 -17.91557 -17.50529 -17.41424 -16.46408 -15.86968 -15.72184 -15.18798 -14.85743 -14.73764 -14.51174 -14.37388 -14.07691 -13.81449 -13.61004 -13.51841 -13.08274 -12.80518 -12.54145 -12.46616 -12.30820 -12.29375 -11.75385 -11.47801 -11.15913 -10.99523 -10.86559 -10.63703 -10.35458 -10.27069 -10.04429 -9.84257 -9.56441 -9.37292 -9.33301 -9.08014 -8.94624 -8.35349 -7.26834 -5.74815 -3.11853 -0.33764 0.10588 1.43781 2.09074 2.91706 2.98206 3.36131 3.39563 3.42177 3.47498 3.74325 3.96098 4.15946 4.19141 4.31416 4.38818 4.60627 4.61415 4.82432 4.89027 5.05832 5.18162 5.25290 5.29970 5.39000 5.43835 5.48500 5.59842 5.69229 5.73184 5.78060 5.86032 6.01636 6.02783 6.12224 6.18488 6.27235 6.38100 6.45958 6.73420 6.75690 6.90091 6.95072 7.57257 7.66965 8.01110 8.22749 8.44063 9.21312 9.93104 10.12048 11.43210 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002798 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.887230 B =10005.059356 C =10766.383805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.174 3.826 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.077 3.923 15 N -0.578 5.578 16 C 0.559 3.441 17 O -0.526 6.526 18 C 0.157 3.843 19 C -0.128 4.128 20 C -0.045 4.045 21 C -0.145 4.145 22 C -0.044 4.044 23 C -0.176 4.176 24 C 0.159 3.841 25 N -0.459 5.459 26 C 0.295 3.705 27 N -0.427 5.427 28 C 0.089 3.911 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.065 0.935 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.022 -23.034 2.571 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.045 4.045 15 N -0.309 5.309 16 C 0.343 3.657 17 O -0.402 6.402 18 C 0.001 3.999 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.150 4.150 22 C -0.071 4.071 23 C -0.196 4.196 24 C -0.019 4.019 25 N -0.168 5.168 26 C 0.058 3.942 27 N -0.140 5.140 28 C -0.035 4.035 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.083 0.917 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.798 -21.320 2.668 30.607 hybrid contribution -0.011 -0.337 0.203 0.393 sum 21.788 -21.656 2.871 30.854 Atomic orbital electron populations 1.69707 1.05113 1.25834 1.57205 1.24681 0.95234 0.97207 1.01834 0.86550 0.79245 0.84989 0.77745 1.21079 1.21733 1.20264 1.19107 0.80393 0.94865 1.43300 0.89036 1.42742 1.04127 1.01745 1.89793 1.20452 0.91120 0.89454 0.92643 0.92218 1.21887 0.96627 0.96779 1.01582 1.21914 1.00505 0.97663 0.96837 1.22816 0.83505 1.05967 0.92240 1.48147 1.18704 1.10626 1.53444 1.17892 0.85363 0.82259 0.80172 1.90830 1.20704 1.83390 1.45247 1.21699 0.89484 0.94692 0.94071 1.21870 1.02976 0.91264 0.98750 1.21479 0.91430 0.99901 0.94407 1.19721 0.95722 0.95738 1.03825 1.21513 0.93182 0.98456 0.93940 1.22053 0.96586 0.99004 1.01993 1.23152 0.99963 0.87576 0.91178 1.67657 1.01886 1.34673 1.12536 1.19433 0.90834 0.87129 0.96838 1.67642 1.03494 1.31198 1.11694 1.22824 0.95581 0.84140 1.00922 0.93029 0.80434 0.91470 0.92133 0.91943 0.91021 0.84938 0.91428 0.82502 0.83179 0.83813 0.83810 0.81441 0.91710 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 7 C -0.25 -7.07 10.41 -15.06 -0.16 -7.23 16 8 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 9 N -0.74 -17.77 4.93 -53.31 -0.26 -18.03 16 10 C 0.17 3.47 2.92 -67.81 -0.20 3.27 16 11 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 12 C -0.13 -2.08 5.35 -26.69 -0.14 -2.23 16 13 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 14 C 0.08 1.10 5.97 -3.71 -0.02 1.08 16 15 N -0.58 -9.73 2.97 -173.69 -0.52 -10.25 16 16 C 0.56 9.54 7.60 -12.10 -0.09 9.45 16 17 O -0.53 -10.54 15.93 5.37 0.09 -10.45 16 18 C 0.16 2.17 6.45 -82.96 -0.53 1.63 16 19 C -0.13 -1.39 9.53 -39.44 -0.38 -1.76 16 20 C -0.05 -0.36 9.89 -39.28 -0.39 -0.75 16 21 C -0.15 -1.30 5.75 -106.69 -0.61 -1.92 16 22 C -0.04 -0.25 9.90 -39.23 -0.39 -0.64 16 23 C -0.18 -0.83 10.04 -39.73 -0.40 -1.23 16 24 C 0.16 1.06 11.14 -17.46 -0.19 0.86 16 25 N -0.46 -5.05 10.43 -12.59 -0.13 -5.18 16 26 C 0.30 3.52 7.62 -157.90 -1.20 2.32 16 27 N -0.43 -5.82 6.42 -9.19 -0.06 -5.87 16 28 C 0.09 1.73 6.02 -3.71 -0.02 1.71 16 29 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 30 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.13 1.87 4.02 -77.74 -0.31 1.56 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.16 1.58 7.78 -52.49 -0.41 1.17 16 38 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 0.35 8.06 -52.48 -0.42 -0.08 16 40 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 41 H 0.17 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.10 2.16 7.00 -51.93 -0.36 1.80 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -36.00 353.29 -10.04 -46.04 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.55 Total: 6.96 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -4.99 Total: 2.74 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -0.19 Total: -68.22 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.00 -10.04 -46.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999210344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.996 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds