Wall clock time and date at job start Tue Mar 31 2020 14:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00135 * 2 1 4 4 H 1.48503 * 109.47267 * 270.26988 * 3 2 1 5 5 H 1.48503 * 109.47317 * 30.27053 * 3 2 1 6 6 H 1.48502 * 109.47364 * 150.27157 * 3 2 1 7 7 C 1.38813 * 119.99841 * 180.26898 * 2 1 3 8 8 H 1.08004 * 120.00029 * 359.72776 * 7 2 1 9 9 N 1.36933 * 120.00208 * 179.72943 * 7 2 1 10 10 C 1.46498 * 120.00255 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.49917 * 34.93578 * 10 9 7 12 12 C 1.53038 * 109.49691 * 154.99936 * 10 9 7 13 13 C 1.53042 * 109.53732 * 181.31676 * 12 10 9 14 14 C 1.53196 * 109.31438 * 298.63695 * 13 12 10 15 15 N 1.46927 * 108.77628 * 54.62877 * 14 13 12 16 16 C 1.34776 * 120.62785 * 126.41279 * 15 14 13 17 17 O 1.21493 * 120.00221 * 179.84560 * 16 15 14 18 18 C 1.48350 * 120.00196 * 359.84977 * 16 15 14 19 19 C 1.40169 * 119.20743 * 203.12001 * 18 16 15 20 20 C 1.36624 * 119.71025 * 179.97438 * 19 18 16 21 21 C 1.40589 * 118.20739 * 0.02562 * 20 19 18 22 22 C 1.40736 * 121.38126 * 179.97438 * 21 20 19 23 23 C 1.36591 * 118.13419 * 180.02562 * 22 21 20 24 24 C 1.39426 * 119.84787 * 359.97438 * 23 22 21 25 25 N 1.31013 * 121.84095 * 0.02562 * 24 23 22 26 26 C 1.33867 * 121.42182 * 359.97438 * 25 24 23 27 27 N 1.31888 * 119.20411 * 22.84917 * 18 16 15 28 28 C 1.46919 * 118.74113 * 306.39697 * 15 14 13 29 29 H 0.97005 * 120.00187 * 359.73510 * 1 2 3 30 30 H 0.96998 * 119.99844 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.46360 * 301.33798 * 12 10 9 32 32 H 1.08997 * 109.46228 * 61.31212 * 12 10 9 33 33 H 1.08996 * 109.49987 * 58.58231 * 13 12 10 34 34 H 1.08999 * 109.49780 * 178.68659 * 13 12 10 35 35 H 1.08996 * 109.59102 * 174.42036 * 14 13 12 36 36 H 1.09003 * 109.58144 * 294.84951 * 14 13 12 37 37 H 1.07997 * 120.14569 * 359.97438 * 19 18 16 38 38 H 1.08002 * 120.89474 * 180.02562 * 20 19 18 39 39 H 1.08006 * 120.93226 * 0.02562 * 22 21 20 40 40 H 1.07997 * 120.07392 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.07713 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.59212 * 293.81611 * 28 15 14 43 43 H 1.09004 * 109.58925 * 173.38976 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4920 2.0497 -1.4001 5 1 1.4505 2.6510 0.7058 6 1 3.5506 1.4385 0.6943 7 6 2.0102 -1.2022 -0.0056 8 1 1.4702 -2.1375 -0.0056 9 7 3.3795 -1.2022 -0.0112 10 6 4.1120 -2.4709 -0.0178 11 1 3.5620 -3.2055 -0.6059 12 6 5.4972 -2.2579 -0.6325 13 6 6.2508 -3.5893 -0.6699 14 6 6.4311 -4.1098 0.7596 15 7 5.1141 -4.1798 1.4071 16 6 4.6902 -5.3240 1.9793 17 8 3.6001 -5.3684 2.5140 18 6 5.5546 -6.5294 1.9563 19 6 4.9673 -7.7950 2.0912 20 6 5.7537 -8.9121 2.0710 21 6 7.1408 -8.7455 1.9139 22 6 8.0128 -9.8497 1.8844 23 6 9.3488 -9.6114 1.7292 24 6 9.8102 -8.3016 1.6052 25 7 8.9953 -7.2761 1.6332 26 6 7.6748 -7.4379 1.7823 27 7 6.8567 -6.3848 1.8041 28 6 4.2681 -2.9786 1.4192 29 1 -0.4851 0.8401 0.0039 30 1 3.8645 -0.3622 -0.0109 31 1 5.3892 -1.8732 -1.6466 32 1 6.0556 -1.5415 -0.0300 33 1 5.6809 -4.3138 -1.2515 34 1 7.2282 -3.4413 -1.1291 35 1 6.8785 -5.1033 0.7332 36 1 7.0765 -3.4308 1.3169 37 1 3.8979 -7.8867 2.2106 38 1 5.3213 -9.8965 2.1729 39 1 7.6362 -10.8573 1.9817 40 1 10.0460 -10.4357 1.7019 41 1 10.8691 -8.1275 1.4827 42 1 4.7370 -2.2075 2.0303 43 1 3.2882 -3.2259 1.8278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999210344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:54 Heat of formation + Delta-G solvation = 49.909562 kcal Electronic energy + Delta-G solvation = -27087.375574 eV Core-core repulsion = 23325.883752 eV Total energy + Delta-G solvation = -3761.491822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49185 -41.16726 -39.11088 -38.43993 -36.42723 -35.21018 -34.02092 -32.98687 -32.23391 -32.04679 -30.41053 -27.55165 -25.80759 -25.73214 -25.07313 -23.66427 -23.12912 -22.32275 -20.97606 -19.73567 -19.55617 -18.91109 -18.15312 -17.44311 -17.00097 -16.93854 -16.51487 -15.97971 -15.87919 -15.68984 -15.50130 -15.25115 -15.10981 -14.88822 -14.51391 -14.31498 -14.07549 -13.98145 -13.88331 -13.48733 -13.14080 -12.97701 -12.87629 -12.58639 -12.33652 -12.16036 -12.08971 -11.96757 -11.85641 -11.60275 -11.41936 -11.14239 -10.95625 -10.11648 -9.99468 -9.87037 -9.77887 -9.30554 -8.05460 -5.41918 -1.02276 -0.55269 0.81636 1.24964 1.36437 1.41277 1.48166 1.72272 1.99199 2.46234 2.50902 3.01250 3.24634 3.26073 3.37123 3.49378 3.61479 3.71686 3.88521 3.93736 4.01319 4.01544 4.14455 4.23447 4.27864 4.30227 4.48255 4.62537 4.63760 4.67310 4.78027 4.81781 4.95041 4.97527 5.03450 5.08800 5.15671 5.22356 5.29374 5.36884 5.49080 5.63788 5.73091 6.10861 6.17763 6.29613 6.85917 7.02556 7.04607 7.74829 7.97668 9.16130 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.002798 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.887230 B =10005.059356 C =10766.383805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.238 4.238 8 H 0.047 0.953 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.035 0.965 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.077 3.923 15 N -0.581 5.581 16 C 0.552 3.448 17 O -0.571 6.571 18 C 0.133 3.867 19 C -0.149 4.149 20 C -0.019 4.019 21 C -0.153 4.153 22 C -0.041 4.041 23 C -0.161 4.161 24 C 0.163 3.837 25 N -0.505 5.505 26 C 0.268 3.732 27 N -0.449 5.449 28 C 0.101 3.899 29 H 0.259 0.741 30 H 0.371 0.629 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.154 0.846 38 H 0.197 0.803 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.200 0.800 42 H 0.070 0.930 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.856 -25.496 2.170 37.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.369 4.369 8 H 0.066 0.934 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.053 0.947 12 C -0.159 4.159 13 C -0.160 4.160 14 C -0.044 4.044 15 N -0.311 5.311 16 C 0.339 3.661 17 O -0.450 6.450 18 C -0.021 4.021 19 C -0.170 4.170 20 C -0.045 4.045 21 C -0.158 4.158 22 C -0.067 4.067 23 C -0.180 4.180 24 C -0.014 4.014 25 N -0.215 5.215 26 C 0.030 3.970 27 N -0.163 5.163 28 C -0.024 4.024 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.158 0.842 36 H 0.093 0.907 37 H 0.172 0.828 38 H 0.214 0.786 39 H 0.203 0.797 40 H 0.206 0.794 41 H 0.217 0.783 42 H 0.088 0.912 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.705 -23.817 2.257 35.854 hybrid contribution -1.320 0.126 0.347 1.371 sum 25.385 -23.691 2.604 34.820 Atomic orbital electron populations 1.69908 1.07331 1.26884 1.59182 1.25591 0.96201 1.01576 1.02088 0.85315 0.78624 0.78911 0.78329 1.19919 1.22218 1.17335 1.18970 0.82544 0.93300 1.42086 0.93449 1.42648 1.02450 1.03541 1.89903 1.20579 0.93021 0.87279 0.92796 0.94727 1.21804 0.93845 0.98624 1.01592 1.21891 1.01732 0.95911 0.96421 1.23014 0.81993 1.06907 0.92458 1.48195 1.19271 1.09851 1.53816 1.18524 0.85324 0.83244 0.78999 1.90780 1.22842 1.84335 1.47062 1.21116 0.89607 0.93877 0.97538 1.21892 1.03269 0.91215 1.00642 1.21940 0.90870 1.00624 0.91077 1.20021 0.96619 0.95774 1.03382 1.22016 0.93076 0.99055 0.92521 1.22558 0.97075 0.99246 0.99156 1.23909 1.00966 0.87917 0.88582 1.67648 1.01841 1.36996 1.15019 1.19662 0.91303 0.87925 0.98111 1.67302 1.03335 1.33060 1.12569 1.22360 0.94289 0.85548 1.00202 0.93194 0.79537 0.90841 0.90668 0.92530 0.87577 0.84155 0.90744 0.82843 0.78643 0.79703 0.79412 0.78316 0.91226 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.44 13.97 21.65 0.30 -65.14 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.96 46.66 27.74 68.60 1.90 48.56 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 7 C -0.24 -14.35 10.41 84.03 0.88 -13.47 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.74 -36.38 4.93 -322.57 -1.59 -37.97 16 10 C 0.17 7.17 2.92 45.07 0.13 7.30 16 11 H 0.03 1.60 8.08 -2.39 -0.02 1.58 16 12 C -0.12 -3.72 5.35 30.62 0.16 -3.56 16 13 C -0.12 -3.13 6.08 30.67 0.19 -2.94 16 14 C 0.08 2.21 5.97 86.36 0.52 2.72 16 15 N -0.58 -20.79 2.97 -821.73 -2.44 -23.23 16 16 C 0.55 20.55 7.60 86.94 0.66 21.21 16 17 O -0.57 -25.36 15.93 -3.69 -0.06 -25.42 16 18 C 0.13 3.88 6.45 42.30 0.27 4.15 16 19 C -0.15 -3.31 9.53 22.36 0.21 -3.10 16 20 C -0.02 -0.26 9.89 22.47 0.22 -0.04 16 21 C -0.15 -2.32 5.75 -21.20 -0.12 -2.44 16 22 C -0.04 -0.24 9.90 22.50 0.22 -0.02 16 23 C -0.16 -0.62 10.04 22.17 0.22 -0.40 16 24 C 0.16 1.54 11.14 85.10 0.95 2.49 16 25 N -0.50 -10.19 10.43 -193.76 -2.02 -12.21 16 26 C 0.27 6.10 7.62 135.12 1.03 7.13 16 27 N -0.45 -12.46 6.42 -182.97 -1.17 -13.64 16 28 C 0.10 4.19 6.02 86.37 0.52 4.71 16 29 H 0.26 16.32 8.31 -92.70 -0.77 15.55 16 30 H 0.37 16.94 5.66 -92.71 -0.52 16.42 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.14 4.00 4.02 -53.35 -0.21 3.78 16 36 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.15 3.35 7.78 -2.91 -0.02 3.33 16 38 H 0.20 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.19 -0.40 8.06 -2.91 -0.02 -0.43 16 40 H 0.19 -0.87 8.06 -2.91 -0.02 -0.90 16 41 H 0.20 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.05 2.69 7.00 -2.39 -0.02 2.67 16 Total: -1.00 -87.48 353.29 1.71 -85.77 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.26 Total: 22.92 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 6.53 Total: 20.35 kcal Atomic # 7 Polarization: -145.26 SS G_CDS: -6.92 Total: -152.19 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Total: -87.48 1.71 -85.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999210344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.678 kcal (2) G-P(sol) polarization free energy of solvation -87.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds