Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47235 * 270.00101 * 3 2 1 5 5 H 1.48506 * 109.47044 * 29.99867 * 3 2 1 6 6 H 1.48498 * 109.47182 * 149.99632 * 3 2 1 7 7 C 1.38821 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99746 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99670 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49771 * 324.99976 * 10 9 7 12 12 C 1.53036 * 109.52195 * 204.91626 * 10 9 7 13 13 C 1.53045 * 109.53869 * 178.67007 * 12 10 9 14 14 C 1.53199 * 109.31226 * 61.36023 * 13 12 10 15 15 N 1.46919 * 108.77601 * 305.36945 * 14 13 12 16 16 C 1.34783 * 120.63044 * 233.62774 * 15 14 13 17 17 O 1.21500 * 120.00322 * 172.29595 * 16 15 14 18 18 C 1.48236 * 119.99464 * 352.29678 * 16 15 14 19 19 C 1.40579 * 119.74254 * 170.62048 * 18 16 15 20 20 N 1.31260 * 120.56817 * 179.65545 * 19 18 16 21 21 C 1.33782 * 119.80599 * 0.65882 * 20 19 18 22 22 C 1.40541 * 121.00131 * 179.62700 * 21 20 19 23 23 C 1.36073 * 119.75482 * 179.97438 * 22 21 20 24 24 C 1.39477 * 121.01903 * 0.03701 * 23 22 21 25 25 C 1.35998 * 120.98013 * 359.97438 * 24 23 22 26 26 C 1.40826 * 119.69722 * 359.97438 * 25 24 23 27 27 N 1.32164 * 119.75084 * 350.89362 * 18 16 15 28 28 C 1.46925 * 118.74120 * 53.60783 * 15 14 13 29 29 H 0.96997 * 120.00376 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00130 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.45937 * 298.68467 * 12 10 9 32 32 H 1.08996 * 109.46406 * 58.64963 * 12 10 9 33 33 H 1.09004 * 109.49644 * 301.41512 * 13 12 10 34 34 H 1.08999 * 109.52835 * 181.33345 * 13 12 10 35 35 H 1.09002 * 109.58025 * 185.57725 * 14 13 12 36 36 H 1.08998 * 109.58463 * 65.15987 * 14 13 12 37 37 H 1.08000 * 119.71765 * 359.97438 * 19 18 16 38 38 H 1.08009 * 120.12232 * 359.95173 * 22 21 20 39 39 H 1.07998 * 119.49236 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.51404 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.14725 * 179.97438 * 25 24 23 42 42 H 1.09003 * 109.59041 * 186.60109 * 28 15 14 43 43 H 1.09002 * 109.58550 * 66.17950 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9689 -3.5511 -0.5888 12 6 1.1809 -4.7538 -0.6071 13 6 1.9577 -6.0721 -0.6377 14 6 2.3199 -6.4801 0.7938 15 7 3.0392 -5.3705 1.4341 16 6 4.2432 -5.5715 2.0056 17 8 4.8908 -4.6251 2.4069 18 6 4.7773 -6.9473 2.1443 19 6 6.1074 -7.1409 2.5560 20 7 6.5949 -8.3522 2.6907 21 6 5.8249 -9.4126 2.4218 22 6 6.3235 -10.7203 2.5500 23 6 5.5179 -11.7807 2.2704 24 6 4.1996 -11.5921 1.8558 25 6 3.6806 -10.3424 1.7195 26 6 4.4825 -9.2194 2.0006 27 7 4.0009 -7.9824 1.8749 28 6 2.4213 -4.0375 1.4393 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.2819 -4.8761 -0.0031 32 1 0.9006 -4.4739 -1.6226 33 1 2.8695 -5.9436 -1.2211 34 1 1.3413 -6.8478 -1.0922 35 1 2.9570 -7.3642 0.7716 36 1 1.4099 -6.6969 1.3533 37 1 6.7320 -6.2858 2.7682 38 1 7.3425 -10.8831 2.8691 39 1 5.9053 -12.7838 2.3707 40 1 3.5817 -12.4511 1.6399 41 1 2.6581 -10.2120 1.3972 42 1 3.1254 -3.3099 1.8431 43 1 1.5196 -4.0551 2.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999358917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = 68.956655 kcal Electronic energy + Delta-G solvation = -27041.238411 eV Core-core repulsion = 23280.572533 eV Total energy + Delta-G solvation = -3760.665878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94685 -39.85745 -37.85800 -37.19811 -35.49459 -34.29864 -32.32441 -31.38076 -31.08361 -30.97142 -28.26850 -26.52453 -25.25198 -24.32760 -23.89552 -22.71189 -21.81447 -21.00040 -19.54051 -18.75094 -18.60209 -17.14642 -17.04559 -16.33941 -15.86220 -15.85187 -15.25360 -14.84173 -14.77974 -14.53729 -14.21277 -14.17904 -13.84352 -13.51705 -13.39279 -12.89184 -12.60744 -12.45278 -12.34600 -12.23882 -12.20539 -12.05176 -11.89426 -11.22296 -10.90082 -10.81996 -10.57260 -10.44285 -10.26262 -10.18755 -9.81379 -9.69646 -9.38394 -9.12426 -9.05695 -8.95082 -8.34629 -6.99298 -5.77790 -3.07498 -0.37137 0.04358 1.42269 2.13189 2.93014 2.97588 3.45738 3.51266 3.52851 3.54138 3.67827 3.70336 3.84552 4.30806 4.41070 4.52040 4.59986 4.68589 4.79912 4.91403 5.16057 5.24798 5.35355 5.38859 5.44347 5.50354 5.60256 5.67408 5.70726 5.83354 5.85803 5.92142 6.07355 6.13688 6.19301 6.23874 6.27762 6.39823 6.50358 6.72399 6.77435 6.83222 7.01045 7.23621 7.58053 7.73031 8.17449 8.40411 9.52203 10.06128 10.41599 11.44452 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.002738 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.438635 B =10222.358520 C =11109.496020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.170 3.830 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.074 3.926 15 N -0.578 5.578 16 C 0.563 3.437 17 O -0.526 6.526 18 C 0.071 3.929 19 C 0.129 3.871 20 N -0.425 5.425 21 C 0.091 3.909 22 C -0.087 4.087 23 C -0.092 4.092 24 C -0.102 4.102 25 C -0.076 4.076 26 C 0.069 3.931 27 N -0.384 5.384 28 C 0.089 3.911 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.189 0.811 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -27.700 3.224 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.049 4.049 15 N -0.309 5.309 16 C 0.347 3.653 17 O -0.402 6.402 18 C -0.084 4.084 19 C -0.046 4.046 20 N -0.138 5.138 21 C -0.034 4.034 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.095 4.095 26 C -0.056 4.056 27 N -0.102 5.102 28 C -0.035 4.035 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.206 0.794 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.111 0.889 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.592 -27.175 3.432 28.707 hybrid contribution -0.059 1.015 0.013 1.017 sum 8.534 -26.160 3.445 27.731 Atomic orbital electron populations 1.69662 1.05128 1.25765 1.57484 1.24754 0.95520 0.97767 1.02679 0.86186 0.78831 0.83675 0.77532 1.21691 1.21749 1.20552 1.19286 0.91134 0.83954 1.42952 0.90981 1.42386 1.05815 0.99576 1.88036 1.20475 0.94992 0.86484 0.92229 0.93074 1.21846 0.98718 0.94280 1.01690 1.21926 1.00543 0.97954 0.96535 1.22916 0.98444 0.90997 0.92523 1.48170 1.17617 1.11806 1.53322 1.17683 0.81944 0.85958 0.79704 1.90821 1.57777 1.41235 1.50403 1.22732 0.93399 0.94345 0.97967 1.24017 0.93090 0.95808 0.91661 1.68841 1.34937 0.98413 1.11651 1.19802 0.91298 0.94443 0.97873 1.20837 1.00970 0.89395 0.99463 1.21099 0.93736 0.99468 0.96891 1.21054 0.95626 0.97369 0.98132 1.20913 1.00074 0.90180 0.98367 1.19833 0.93081 0.92578 1.00130 1.68722 1.33953 0.98252 1.09312 1.22932 0.97868 0.81189 1.01514 0.93471 0.78054 0.92062 0.91540 0.92030 0.91122 0.84882 0.91660 0.79419 0.84076 0.84527 0.84434 0.83819 0.88918 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -17.94 5.13 -53.31 -0.27 -18.21 16 10 C 0.17 3.41 2.92 -67.81 -0.20 3.22 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.06 5.36 -26.69 -0.14 -2.20 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.07 0.97 5.89 -3.71 -0.02 0.94 16 15 N -0.58 -9.36 2.97 -173.73 -0.52 -9.88 16 16 C 0.56 9.27 7.66 -12.15 -0.09 9.18 16 17 O -0.53 -10.17 15.79 5.37 0.08 -10.09 16 18 C 0.07 0.96 6.60 -82.73 -0.55 0.42 16 19 C 0.13 1.60 10.75 -16.91 -0.18 1.42 16 20 N -0.43 -5.10 10.45 -10.53 -0.11 -5.21 16 21 C 0.09 0.97 6.60 -84.70 -0.56 0.41 16 22 C -0.09 -0.66 9.98 -39.49 -0.39 -1.06 16 23 C -0.09 -0.48 9.95 -39.90 -0.40 -0.88 16 24 C -0.10 -0.53 9.95 -39.92 -0.40 -0.93 16 25 C -0.08 -0.57 9.99 -39.41 -0.39 -0.96 16 26 C 0.07 0.73 6.60 -84.79 -0.56 0.18 16 27 N -0.38 -4.66 6.22 -7.38 -0.05 -4.71 16 28 C 0.09 1.71 6.03 -3.71 -0.02 1.69 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 1.62 4.01 -84.75 -0.34 1.28 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.19 2.09 7.65 -52.49 -0.40 1.69 16 38 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -33.00 356.02 -9.72 -42.73 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.62 Total: 7.46 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -4.31 Total: 2.21 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.22 Total: -65.39 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.00 -9.72 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999358917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.686 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds