Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47235 * 270.00101 * 3 2 1 5 5 H 1.48506 * 109.47044 * 29.99867 * 3 2 1 6 6 H 1.48498 * 109.47182 * 149.99632 * 3 2 1 7 7 C 1.38821 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99746 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99670 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49771 * 324.99976 * 10 9 7 12 12 C 1.53036 * 109.52195 * 204.91626 * 10 9 7 13 13 C 1.53045 * 109.53869 * 178.67007 * 12 10 9 14 14 C 1.53199 * 109.31226 * 61.36023 * 13 12 10 15 15 N 1.46919 * 108.77601 * 305.36945 * 14 13 12 16 16 C 1.34783 * 120.63044 * 233.62774 * 15 14 13 17 17 O 1.21500 * 120.00322 * 172.29595 * 16 15 14 18 18 C 1.48236 * 119.99464 * 352.29678 * 16 15 14 19 19 C 1.40579 * 119.74254 * 170.62048 * 18 16 15 20 20 N 1.31260 * 120.56817 * 179.65545 * 19 18 16 21 21 C 1.33782 * 119.80599 * 0.65882 * 20 19 18 22 22 C 1.40541 * 121.00131 * 179.62700 * 21 20 19 23 23 C 1.36073 * 119.75482 * 179.97438 * 22 21 20 24 24 C 1.39477 * 121.01903 * 0.03701 * 23 22 21 25 25 C 1.35998 * 120.98013 * 359.97438 * 24 23 22 26 26 C 1.40826 * 119.69722 * 359.97438 * 25 24 23 27 27 N 1.32164 * 119.75084 * 350.89362 * 18 16 15 28 28 C 1.46925 * 118.74120 * 53.60783 * 15 14 13 29 29 H 0.96997 * 120.00376 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00130 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.45937 * 298.68467 * 12 10 9 32 32 H 1.08996 * 109.46406 * 58.64963 * 12 10 9 33 33 H 1.09004 * 109.49644 * 301.41512 * 13 12 10 34 34 H 1.08999 * 109.52835 * 181.33345 * 13 12 10 35 35 H 1.09002 * 109.58025 * 185.57725 * 14 13 12 36 36 H 1.08998 * 109.58463 * 65.15987 * 14 13 12 37 37 H 1.08000 * 119.71765 * 359.97438 * 19 18 16 38 38 H 1.08009 * 120.12232 * 359.95173 * 22 21 20 39 39 H 1.07998 * 119.49236 * 180.02562 * 23 22 21 40 40 H 1.07996 * 119.51404 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.14725 * 179.97438 * 25 24 23 42 42 H 1.09003 * 109.59041 * 186.60109 * 28 15 14 43 43 H 1.09002 * 109.58550 * 66.17950 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9689 -3.5511 -0.5888 12 6 1.1809 -4.7538 -0.6071 13 6 1.9577 -6.0721 -0.6377 14 6 2.3199 -6.4801 0.7938 15 7 3.0392 -5.3705 1.4341 16 6 4.2432 -5.5715 2.0056 17 8 4.8908 -4.6251 2.4069 18 6 4.7773 -6.9473 2.1443 19 6 6.1074 -7.1409 2.5560 20 7 6.5949 -8.3522 2.6907 21 6 5.8249 -9.4126 2.4218 22 6 6.3235 -10.7203 2.5500 23 6 5.5179 -11.7807 2.2704 24 6 4.1996 -11.5921 1.8558 25 6 3.6806 -10.3424 1.7195 26 6 4.4825 -9.2194 2.0006 27 7 4.0009 -7.9824 1.8749 28 6 2.4213 -4.0375 1.4393 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.2819 -4.8761 -0.0031 32 1 0.9006 -4.4739 -1.6226 33 1 2.8695 -5.9436 -1.2211 34 1 1.3413 -6.8478 -1.0922 35 1 2.9570 -7.3642 0.7716 36 1 1.4099 -6.6969 1.3533 37 1 6.7320 -6.2858 2.7682 38 1 7.3425 -10.8831 2.8691 39 1 5.9053 -12.7838 2.3707 40 1 3.5817 -12.4511 1.6399 41 1 2.6581 -10.2120 1.3972 42 1 3.1254 -3.3099 1.8431 43 1 1.5196 -4.0551 2.0514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999358917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = 46.927227 kcal Electronic energy + Delta-G solvation = -27042.193679 eV Core-core repulsion = 23280.572533 eV Total energy + Delta-G solvation = -3761.621146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79129 -41.07768 -38.91680 -38.25790 -36.59508 -35.84777 -33.91170 -32.78352 -32.12296 -31.62760 -29.97851 -27.55543 -26.24622 -25.86744 -25.21523 -23.50075 -23.13322 -22.26160 -20.85310 -19.56515 -19.48117 -19.14169 -18.16094 -17.43064 -17.04913 -16.78916 -16.53622 -15.95694 -15.87317 -15.53553 -15.50156 -15.38906 -15.13679 -15.00541 -14.68850 -14.19893 -14.03541 -13.83421 -13.33686 -12.97008 -12.95444 -12.90504 -12.88466 -12.79526 -12.69802 -12.49681 -12.21672 -11.92102 -11.87119 -11.57295 -11.43019 -11.35172 -11.09813 -10.13469 -10.02481 -9.79063 -9.61014 -9.03668 -7.99214 -5.28705 -1.16119 -0.71024 0.72575 1.28356 1.44326 1.45627 1.54792 1.70898 2.00254 2.52600 2.61533 2.89249 2.94450 3.06565 3.33564 3.42269 3.66580 3.77106 3.91581 3.98003 4.07075 4.11917 4.24994 4.26343 4.35739 4.36886 4.39795 4.68327 4.71697 4.79476 4.85462 4.88501 4.97386 5.02935 5.09006 5.16187 5.22094 5.34980 5.36225 5.42838 5.45720 5.57764 5.70180 5.91430 6.22922 6.25176 6.44449 6.88423 7.30032 8.01135 8.27396 9.23409 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.002738 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.438635 B =10222.358520 C =11109.496020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.032 0.968 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.074 3.926 15 N -0.580 5.580 16 C 0.562 3.438 17 O -0.568 6.568 18 C 0.049 3.951 19 C 0.118 3.882 20 N -0.436 5.436 21 C 0.077 3.923 22 C -0.107 4.107 23 C -0.066 4.066 24 C -0.083 4.083 25 C -0.087 4.087 26 C 0.054 3.946 27 N -0.381 5.381 28 C 0.104 3.896 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.187 0.813 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.162 0.838 42 H 0.056 0.944 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -32.349 2.808 33.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.084 0.916 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.048 4.048 15 N -0.311 5.311 16 C 0.348 3.652 17 O -0.447 6.447 18 C -0.105 4.105 19 C -0.056 4.056 20 N -0.149 5.149 21 C -0.049 4.049 22 C -0.127 4.127 23 C -0.086 4.086 24 C -0.103 4.103 25 C -0.106 4.106 26 C -0.073 4.073 27 N -0.099 5.099 28 C -0.021 4.021 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.096 0.904 37 H 0.204 0.796 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.196 0.804 41 H 0.179 0.821 42 H 0.075 0.925 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.588 -31.854 3.009 33.128 hybrid contribution -0.008 2.068 0.159 2.075 sum 8.579 -29.786 3.168 31.158 Atomic orbital electron populations 1.69791 1.06323 1.26196 1.59056 1.25496 0.96408 1.00818 1.03342 0.85215 0.77652 0.79789 0.77583 1.21058 1.21710 1.20148 1.19527 0.91089 0.85396 1.41714 0.91596 1.42500 1.05529 1.00515 1.88265 1.20616 0.94680 0.86126 0.92694 0.95030 1.21753 0.98490 0.94397 1.00989 1.21914 1.00430 0.96961 0.96647 1.23182 0.98950 0.90244 0.92377 1.48185 1.17892 1.11244 1.53775 1.18106 0.81443 0.87026 0.78637 1.90780 1.58884 1.43006 1.52004 1.22079 0.94038 0.93007 1.01369 1.23915 0.92831 0.96267 0.92579 1.68844 1.35470 0.98538 1.12085 1.20322 0.91562 0.95284 0.97738 1.21114 1.02237 0.88589 1.00721 1.21650 0.93227 1.00522 0.93168 1.21595 0.95812 0.97669 0.95176 1.21235 1.00725 0.89912 0.98738 1.20279 0.93718 0.92630 1.00716 1.68480 1.33801 0.98698 1.08943 1.22390 0.96917 0.82478 1.00316 0.93807 0.78943 0.91362 0.91938 0.92590 0.87234 0.83365 0.90353 0.79636 0.82973 0.80509 0.80371 0.82089 0.92545 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.25 -14.24 9.93 84.04 0.83 -13.40 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.73 -37.80 5.13 -322.57 -1.65 -39.45 16 10 C 0.17 7.06 2.92 45.07 0.13 7.19 16 11 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 12 C -0.12 -3.77 5.36 30.62 0.16 -3.61 16 13 C -0.12 -2.92 6.08 30.68 0.19 -2.73 16 14 C 0.07 1.83 5.89 86.37 0.51 2.34 16 15 N -0.58 -19.39 2.97 -821.87 -2.44 -21.84 16 16 C 0.56 19.60 7.66 86.90 0.67 20.27 16 17 O -0.57 -23.81 15.79 -3.72 -0.06 -23.86 16 18 C 0.05 1.36 6.60 42.33 0.28 1.64 16 19 C 0.12 3.10 10.75 85.35 0.92 4.01 16 20 N -0.44 -10.55 10.45 -187.21 -1.96 -12.50 16 21 C 0.08 1.53 6.60 40.34 0.27 1.79 16 22 C -0.11 -1.29 9.98 22.33 0.22 -1.07 16 23 C -0.07 -0.33 9.95 22.06 0.22 -0.11 16 24 C -0.08 -0.39 9.95 22.05 0.22 -0.17 16 25 C -0.09 -0.94 9.99 22.38 0.22 -0.72 16 26 C 0.05 1.03 6.60 40.48 0.27 1.30 16 27 N -0.38 -8.93 6.22 -177.27 -1.10 -10.03 16 28 C 0.10 4.21 6.03 86.36 0.52 4.73 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.38 20.52 7.80 -92.71 -0.72 19.80 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.15 3.35 4.01 -67.20 -0.27 3.08 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.19 4.66 7.65 -2.91 -0.02 4.64 16 38 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 40 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.06 2.67 7.00 -2.39 -0.02 2.66 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -76.40 356.02 1.26 -75.15 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.07 Total: 23.92 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 6.09 Total: 17.92 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -6.87 Total: -143.05 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -76.40 1.26 -75.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999358917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.073 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds