Wall clock time and date at job start Tue Mar 31 2020 14:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 299.99848 * 3 2 1 6 6 H 1.48494 * 109.47301 * 60.00177 * 3 2 1 7 7 C 1.38811 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99899 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99458 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.49651 * 325.05762 * 10 9 7 12 12 C 1.53042 * 109.49231 * 204.99989 * 10 9 7 13 13 C 1.53038 * 109.53557 * 178.64996 * 12 10 9 14 14 C 1.53193 * 109.34139 * 61.34841 * 13 12 10 15 15 N 1.46933 * 108.77024 * 305.41789 * 14 13 12 16 16 C 1.34776 * 120.60193 * 233.57572 * 15 14 13 17 17 O 1.21545 * 120.00064 * 172.23893 * 16 15 14 18 18 C 1.47904 * 119.99997 * 352.23912 * 16 15 14 19 19 N 1.32139 * 120.03050 * 352.26301 * 18 16 15 20 20 C 1.31978 * 122.76470 * 179.69991 * 19 18 16 21 21 C 1.37778 * 121.73001 * 0.57552 * 20 19 18 22 22 C 1.40391 * 118.72743 * 359.72717 * 21 20 19 23 23 C 1.40642 * 122.27325 * 179.97438 * 22 21 20 24 24 C 1.36647 * 117.94446 * 180.02562 * 23 22 21 25 25 C 1.39396 * 119.92687 * 359.97438 * 24 23 22 26 26 N 1.31206 * 121.85505 * 0.02562 * 25 24 23 27 27 C 1.33256 * 121.22042 * 359.97438 * 26 25 24 28 28 C 1.46923 * 118.76903 * 53.54772 * 15 14 13 29 29 H 0.97002 * 119.99799 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00503 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46304 * 58.63387 * 12 10 9 32 32 H 1.08996 * 109.46008 * 298.67048 * 12 10 9 33 33 H 1.09000 * 109.50050 * 181.31729 * 13 12 10 34 34 H 1.08999 * 109.49949 * 301.37749 * 13 12 10 35 35 H 1.09001 * 109.58177 * 65.16785 * 14 13 12 36 36 H 1.09001 * 109.58916 * 185.58926 * 14 13 12 37 37 H 1.07999 * 119.13395 * 180.27558 * 20 19 18 38 38 H 1.08000 * 120.63740 * 179.74143 * 21 20 19 39 39 H 1.07993 * 121.02736 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.03205 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.07170 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.58528 * 186.62406 * 28 15 14 43 43 H 1.09005 * 109.69780 * 66.27371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9697 -3.5509 -0.5861 12 6 1.1815 -4.7531 -0.6082 13 6 1.9580 -6.0715 -0.6384 14 6 2.3183 -6.4810 0.7932 15 7 3.0362 -5.3716 1.4358 16 6 4.2389 -5.5734 2.0095 17 8 4.8866 -4.6271 2.4122 18 6 4.7706 -6.9465 2.1490 19 7 4.0077 -7.9843 1.8537 20 6 4.4285 -9.2313 1.9529 21 6 5.7006 -9.5345 2.3866 22 6 6.5670 -8.4827 2.7243 23 6 7.8801 -8.7068 3.1755 24 6 8.6471 -7.6177 3.4802 25 6 8.1205 -6.3348 3.3391 26 7 6.8947 -6.1319 2.9176 27 6 6.0948 -7.1504 2.6037 28 6 2.4188 -4.0384 1.4407 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 0.9031 -4.4724 -1.6240 32 1 0.2814 -4.8755 -0.0059 33 1 1.3417 -6.8464 -1.0942 34 1 2.8705 -5.9431 -1.2206 35 1 1.4075 -6.6982 1.3512 36 1 2.9554 -7.3652 0.7710 37 1 3.7563 -10.0353 1.6918 38 1 6.0251 -10.5616 2.4650 39 1 8.2701 -9.7086 3.2779 40 1 9.6604 -7.7509 3.8293 41 1 8.7391 -5.4839 3.5835 42 1 3.1224 -3.3114 1.8462 43 1 1.5163 -4.0537 2.0519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999400574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:15 Heat of formation + Delta-G solvation = 75.188893 kcal Electronic energy + Delta-G solvation = -27298.424864 eV Core-core repulsion = 23538.029236 eV Total energy + Delta-G solvation = -3760.395628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64702 -39.61338 -38.23364 -37.08765 -34.39628 -33.96458 -32.29819 -31.73588 -31.06032 -30.71444 -28.11907 -26.17762 -24.76800 -24.46003 -23.87112 -23.07842 -21.69651 -20.51270 -19.41400 -18.79635 -17.83413 -17.26311 -16.98271 -16.44651 -15.69699 -15.56141 -15.08649 -14.78762 -14.58147 -14.33582 -14.11761 -13.96910 -13.55300 -13.47539 -13.32277 -13.22652 -12.92216 -12.69160 -12.41579 -12.21467 -12.08074 -11.32413 -11.11525 -10.94355 -10.75385 -10.72539 -10.44717 -10.09696 -10.06858 -9.76643 -9.70495 -9.63843 -9.52982 -9.01443 -8.89376 -8.76259 -8.12361 -6.90876 -5.71447 -3.00426 -0.36554 0.33420 1.35899 2.45626 3.13644 3.18444 3.49812 3.55970 3.59102 3.81829 3.87628 3.96851 4.09505 4.25151 4.37523 4.45315 4.66030 4.76181 4.91913 5.00822 5.17327 5.23610 5.31211 5.39256 5.48851 5.54313 5.59411 5.70415 5.80504 5.82717 5.95054 6.06684 6.16734 6.25212 6.31701 6.34249 6.45782 6.54125 6.64501 6.94108 6.95537 7.16625 7.29287 7.62785 7.80507 7.83594 8.46458 8.51923 9.58843 10.13762 10.49435 11.51077 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003214 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.943421 B = 8708.919772 C =10126.914437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.071 3.929 15 N -0.585 5.585 16 C 0.555 3.445 17 O -0.497 6.497 18 C 0.154 3.846 19 N -0.435 5.435 20 C 0.068 3.932 21 C -0.127 4.127 22 C -0.083 4.083 23 C -0.067 4.067 24 C -0.154 4.154 25 C 0.131 3.869 26 N -0.417 5.417 27 C 0.105 3.895 28 C 0.092 3.908 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.090 0.910 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 -26.088 5.361 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.052 4.052 15 N -0.319 5.319 16 C 0.339 3.661 17 O -0.369 6.369 18 C 0.002 3.998 19 N -0.148 5.148 20 C -0.077 4.077 21 C -0.148 4.148 22 C -0.090 4.090 23 C -0.093 4.093 24 C -0.175 4.175 25 C -0.043 4.043 26 N -0.125 5.125 27 C -0.020 4.020 28 C -0.032 4.032 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.183 0.817 42 H 0.108 0.892 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.194 -24.503 5.154 28.303 hybrid contribution 1.180 -0.187 0.414 1.264 sum 14.374 -24.690 5.568 29.107 Atomic orbital electron populations 1.69676 1.05106 1.25530 1.57874 1.24739 0.95511 0.97705 1.02904 0.86120 0.79017 0.84062 0.77098 1.20400 1.21926 1.21842 1.19351 0.91180 0.83993 1.42403 0.90947 1.42399 1.05797 0.99641 1.88074 1.20481 0.94899 0.86376 0.92421 0.93179 1.21838 0.98713 0.94447 1.01478 1.21920 1.00352 0.97751 0.96907 1.22968 0.98536 0.91581 0.92106 1.48128 1.17999 1.11475 1.54254 1.17636 0.81848 0.86313 0.80336 1.90870 1.56773 1.40838 1.48430 1.21814 0.89110 0.94093 0.94775 1.67520 1.34973 0.99506 1.12777 1.22785 0.94534 0.93675 0.96709 1.22329 0.94437 0.99389 0.98602 1.18988 0.95855 0.94077 1.00058 1.21409 0.91900 1.00231 0.95726 1.22151 1.01615 0.93737 0.99984 1.23375 0.91611 0.96775 0.92567 1.68336 1.03800 1.32676 1.07650 1.19462 0.94720 0.88986 0.98786 1.22796 0.97713 0.81574 1.01113 0.93602 0.78112 0.91739 0.92157 0.91322 0.92184 0.92106 0.84281 0.81540 0.83709 0.83749 0.83891 0.81670 0.89162 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 7 C -0.24 -6.88 9.93 -15.06 -0.15 -7.03 16 8 H 0.07 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.72 -18.66 5.13 -53.31 -0.27 -18.93 16 10 C 0.17 3.61 2.92 -67.81 -0.20 3.42 16 11 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.13 -2.18 5.35 -26.69 -0.14 -2.33 16 13 C -0.13 -1.83 6.08 -26.61 -0.16 -1.99 16 14 C 0.07 1.00 5.91 -3.71 -0.02 0.98 16 15 N -0.59 -10.39 2.97 -173.86 -0.52 -10.91 16 16 C 0.55 10.33 7.65 -12.30 -0.09 10.24 16 17 O -0.50 -10.92 14.68 5.33 0.08 -10.85 16 18 C 0.15 2.33 6.67 -82.54 -0.55 1.78 16 19 N -0.43 -5.23 6.03 -9.55 -0.06 -5.29 16 20 C 0.07 0.56 11.12 -17.66 -0.20 0.36 16 21 C -0.13 -0.92 9.93 -38.94 -0.39 -1.31 16 22 C -0.08 -0.81 5.75 -106.79 -0.61 -1.43 16 23 C -0.07 -0.46 9.95 -39.25 -0.39 -0.85 16 24 C -0.15 -1.05 10.03 -39.73 -0.40 -1.45 16 25 C 0.13 1.32 11.14 -17.39 -0.19 1.13 16 26 N -0.42 -6.21 8.52 -10.75 -0.09 -6.31 16 27 C 0.11 1.47 6.61 -84.63 -0.56 0.91 16 28 C 0.09 1.90 6.03 -3.72 -0.02 1.88 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.45 7.80 -40.82 -0.32 10.13 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 1.79 3.97 -86.52 -0.34 1.45 16 37 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.09 2.13 7.00 -51.93 -0.36 1.76 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -36.35 353.97 -9.64 -45.99 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.64 Total: 6.90 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.18 Total: 3.84 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.21 Total: -69.48 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.35 -9.64 -45.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999400574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.182 kcal (2) G-P(sol) polarization free energy of solvation -36.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds