Wall clock time and date at job start Tue Mar 31 2020 14:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 299.99848 * 3 2 1 6 6 H 1.48494 * 109.47301 * 60.00177 * 3 2 1 7 7 C 1.38811 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99899 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99458 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.49651 * 325.05762 * 10 9 7 12 12 C 1.53042 * 109.49231 * 204.99989 * 10 9 7 13 13 C 1.53038 * 109.53557 * 178.64996 * 12 10 9 14 14 C 1.53193 * 109.34139 * 61.34841 * 13 12 10 15 15 N 1.46933 * 108.77024 * 305.41789 * 14 13 12 16 16 C 1.34776 * 120.60193 * 233.57572 * 15 14 13 17 17 O 1.21545 * 120.00064 * 172.23893 * 16 15 14 18 18 C 1.47904 * 119.99997 * 352.23912 * 16 15 14 19 19 N 1.32139 * 120.03050 * 352.26301 * 18 16 15 20 20 C 1.31978 * 122.76470 * 179.69991 * 19 18 16 21 21 C 1.37778 * 121.73001 * 0.57552 * 20 19 18 22 22 C 1.40391 * 118.72743 * 359.72717 * 21 20 19 23 23 C 1.40642 * 122.27325 * 179.97438 * 22 21 20 24 24 C 1.36647 * 117.94446 * 180.02562 * 23 22 21 25 25 C 1.39396 * 119.92687 * 359.97438 * 24 23 22 26 26 N 1.31206 * 121.85505 * 0.02562 * 25 24 23 27 27 C 1.33256 * 121.22042 * 359.97438 * 26 25 24 28 28 C 1.46923 * 118.76903 * 53.54772 * 15 14 13 29 29 H 0.97002 * 119.99799 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00503 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46304 * 58.63387 * 12 10 9 32 32 H 1.08996 * 109.46008 * 298.67048 * 12 10 9 33 33 H 1.09000 * 109.50050 * 181.31729 * 13 12 10 34 34 H 1.08999 * 109.49949 * 301.37749 * 13 12 10 35 35 H 1.09001 * 109.58177 * 65.16785 * 14 13 12 36 36 H 1.09001 * 109.58916 * 185.58926 * 14 13 12 37 37 H 1.07999 * 119.13395 * 180.27558 * 20 19 18 38 38 H 1.08000 * 120.63740 * 179.74143 * 21 20 19 39 39 H 1.07993 * 121.02736 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.03205 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.07170 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.58528 * 186.62406 * 28 15 14 43 43 H 1.09005 * 109.69780 * 66.27371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9697 -3.5509 -0.5861 12 6 1.1815 -4.7531 -0.6082 13 6 1.9580 -6.0715 -0.6384 14 6 2.3183 -6.4810 0.7932 15 7 3.0362 -5.3716 1.4358 16 6 4.2389 -5.5734 2.0095 17 8 4.8866 -4.6271 2.4122 18 6 4.7706 -6.9465 2.1490 19 7 4.0077 -7.9843 1.8537 20 6 4.4285 -9.2313 1.9529 21 6 5.7006 -9.5345 2.3866 22 6 6.5670 -8.4827 2.7243 23 6 7.8801 -8.7068 3.1755 24 6 8.6471 -7.6177 3.4802 25 6 8.1205 -6.3348 3.3391 26 7 6.8947 -6.1319 2.9176 27 6 6.0948 -7.1504 2.6037 28 6 2.4188 -4.0384 1.4407 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 0.9031 -4.4724 -1.6240 32 1 0.2814 -4.8755 -0.0059 33 1 1.3417 -6.8464 -1.0942 34 1 2.8705 -5.9431 -1.2206 35 1 1.4075 -6.6982 1.3512 36 1 2.9554 -7.3652 0.7710 37 1 3.7563 -10.0353 1.6918 38 1 6.0251 -10.5616 2.4650 39 1 8.2701 -9.7086 3.2779 40 1 9.6604 -7.7509 3.8293 41 1 8.7391 -5.4839 3.5835 42 1 3.1224 -3.3114 1.8462 43 1 1.5163 -4.0537 2.0519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999400574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:14 Heat of formation + Delta-G solvation = 49.272352 kcal Electronic energy + Delta-G solvation = -27299.548690 eV Core-core repulsion = 23538.029236 eV Total energy + Delta-G solvation = -3761.519454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45723 -40.87196 -39.06459 -38.61049 -36.19240 -34.79204 -33.89535 -32.73082 -32.53308 -31.61605 -29.90035 -27.28626 -25.96708 -25.72083 -25.10783 -24.10032 -23.22190 -21.84833 -20.63124 -19.74450 -19.16517 -18.59788 -18.18594 -17.45735 -16.92575 -16.82681 -16.45685 -15.88108 -15.76839 -15.47404 -15.43937 -15.19781 -15.13366 -14.92589 -14.30814 -14.10919 -13.99516 -13.93123 -13.72704 -13.59551 -13.26185 -12.96061 -12.90890 -12.51936 -12.19178 -12.11469 -11.89598 -11.82504 -11.76835 -11.36704 -11.33652 -11.10214 -10.52203 -10.34848 -9.90210 -9.74665 -9.44190 -9.01832 -8.00590 -5.30151 -1.12302 -0.34472 0.64501 1.41861 1.43485 1.54198 1.64052 1.88471 2.13583 2.51747 2.95111 3.04328 3.19843 3.32111 3.37968 3.64924 3.73368 3.78928 3.92514 3.96169 4.08517 4.13957 4.25612 4.34038 4.36604 4.43487 4.48308 4.58673 4.64634 4.74170 4.77224 4.87745 4.96094 5.06864 5.09494 5.11202 5.16407 5.34706 5.38640 5.45103 5.47387 5.61782 5.78403 6.22248 6.40407 6.57644 6.93435 7.16673 7.28545 7.99427 8.26895 9.22350 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003214 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.943421 B = 8708.919772 C =10126.914437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.246 4.246 8 H 0.062 0.938 9 N -0.728 5.728 10 C 0.170 3.830 11 H 0.026 0.974 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.069 3.931 15 N -0.589 5.589 16 C 0.547 3.453 17 O -0.551 6.551 18 C 0.102 3.898 19 N -0.434 5.434 20 C 0.053 3.947 21 C -0.084 4.084 22 C -0.102 4.102 23 C -0.048 4.048 24 C -0.154 4.154 25 C 0.126 3.874 26 N -0.493 5.493 27 C 0.082 3.918 28 C 0.107 3.893 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.211 0.789 38 H 0.200 0.800 39 H 0.196 0.804 40 H 0.186 0.814 41 H 0.176 0.824 42 H 0.047 0.953 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.795 -31.172 5.479 35.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.080 0.920 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.045 0.955 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.051 4.051 15 N -0.322 5.322 16 C 0.334 3.666 17 O -0.428 6.428 18 C -0.047 4.047 19 N -0.147 5.147 20 C -0.093 4.093 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.073 4.073 24 C -0.174 4.174 25 C -0.047 4.047 26 N -0.202 5.202 27 C -0.042 4.042 28 C -0.018 4.018 29 H 0.063 0.937 30 H 0.211 0.789 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.178 0.822 37 H 0.228 0.772 38 H 0.217 0.783 39 H 0.213 0.787 40 H 0.203 0.797 41 H 0.193 0.807 42 H 0.066 0.934 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.956 -29.629 5.261 33.604 hybrid contribution 0.802 1.161 0.453 1.482 sum 15.758 -28.468 5.714 33.036 Atomic orbital electron populations 1.69803 1.06301 1.26164 1.59096 1.25502 0.96454 1.00806 1.03264 0.85130 0.77911 0.79975 0.77105 1.19987 1.21154 1.21606 1.19550 0.90972 0.85525 1.41749 0.91964 1.42500 1.05499 1.00524 1.88318 1.20597 0.94490 0.86203 0.92690 0.95548 1.21750 0.98439 0.94553 1.00804 1.21916 1.00176 0.96761 0.97072 1.23294 0.99052 0.90978 0.91819 1.48190 1.18335 1.10841 1.54812 1.18349 0.81252 0.88032 0.78979 1.90806 1.58216 1.43169 1.50564 1.21044 0.90701 0.92535 1.00434 1.67171 1.34995 1.00477 1.12070 1.23546 0.96179 0.92760 0.96856 1.22984 0.92908 1.01035 0.93519 1.19388 0.97898 0.92783 1.00894 1.22022 0.90107 1.02419 0.92751 1.22518 1.03425 0.92089 0.99383 1.23854 0.90527 0.99321 0.91025 1.68234 1.06089 1.34817 1.11090 1.19622 0.94296 0.90937 0.99304 1.22241 0.96491 0.83046 1.00038 0.93738 0.78930 0.91987 0.91450 0.87180 0.92911 0.91012 0.82223 0.77200 0.78253 0.78692 0.79721 0.80683 0.93403 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.15 13.06 21.65 0.28 -60.87 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 3 Si 0.97 49.48 29.55 68.60 2.03 51.51 16 4 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.25 -14.98 9.93 84.03 0.83 -14.14 16 8 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.73 -40.01 5.13 -322.57 -1.65 -41.67 16 10 C 0.17 7.74 2.92 45.07 0.13 7.87 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -4.10 5.35 30.62 0.16 -3.94 16 13 C -0.12 -3.26 6.08 30.67 0.19 -3.07 16 14 C 0.07 1.94 5.91 86.36 0.51 2.45 16 15 N -0.59 -22.36 2.97 -822.25 -2.44 -24.80 16 16 C 0.55 22.25 7.65 86.80 0.66 22.91 16 17 O -0.55 -27.19 14.68 -3.86 -0.06 -27.24 16 18 C 0.10 3.20 6.67 42.46 0.28 3.48 16 19 N -0.43 -9.81 6.03 -184.12 -1.11 -10.92 16 20 C 0.05 0.65 11.12 84.56 0.94 1.59 16 21 C -0.08 -0.75 9.93 22.69 0.23 -0.53 16 22 C -0.10 -1.68 5.75 -21.27 -0.12 -1.80 16 23 C -0.05 -0.42 9.95 22.48 0.22 -0.20 16 24 C -0.15 -1.61 10.03 22.18 0.22 -1.38 16 25 C 0.13 2.57 11.14 85.07 0.95 3.52 16 26 N -0.49 -15.72 8.52 -187.92 -1.60 -17.32 16 27 C 0.08 2.34 6.61 40.62 0.27 2.61 16 28 C 0.11 4.83 6.03 86.36 0.52 5.35 16 29 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.38 21.53 7.80 -92.71 -0.72 20.80 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.16 3.91 3.97 -70.69 -0.28 3.62 16 37 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 38 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 39 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.05 2.52 7.00 -2.39 -0.02 2.50 16 43 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -90.28 353.97 1.97 -88.32 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.05 Total: 21.93 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.47 Total: 21.06 kcal Atomic # 7 Polarization: -149.05 SS G_CDS: -6.53 Total: -155.58 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.03 Total: 51.51 kcal Total: -90.28 1.97 -88.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999400574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.588 kcal (2) G-P(sol) polarization free energy of solvation -90.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds