Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48497 * 109.47188 * 240.27734 * 3 2 1 5 5 H 1.48508 * 109.47023 * 0.27709 * 3 2 1 6 6 H 1.48494 * 109.47223 * 120.27128 * 3 2 1 7 7 C 1.38804 * 120.00379 * 180.27401 * 2 1 3 8 8 H 1.08001 * 120.00250 * 179.72651 * 7 2 1 9 9 N 1.36944 * 119.99984 * 359.72699 * 7 2 1 10 10 C 1.46496 * 120.00124 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49724 * 34.92797 * 10 9 7 12 12 C 1.53037 * 109.50027 * 154.99731 * 10 9 7 13 13 C 1.53039 * 109.54058 * 181.31617 * 12 10 9 14 14 C 1.53193 * 109.31122 * 298.63416 * 13 12 10 15 15 N 1.46928 * 108.77412 * 54.63610 * 14 13 12 16 16 C 1.34782 * 120.63235 * 126.41178 * 15 14 13 17 17 O 1.21540 * 120.00345 * 174.98733 * 16 15 14 18 18 C 1.47917 * 119.99665 * 354.98799 * 16 15 14 19 19 N 1.32369 * 120.63577 * 75.60403 * 18 16 15 20 20 N 1.28093 * 123.17729 * 179.73261 * 19 18 16 21 21 C 1.31803 * 123.49660 * 0.56988 * 20 19 18 22 22 C 1.40398 * 119.13726 * 359.72320 * 21 20 19 23 23 C 1.40238 * 122.74354 * 179.97438 * 22 21 20 24 24 C 1.36253 * 119.37069 * 180.02562 * 23 22 21 25 25 C 1.39374 * 121.07899 * 0.02562 * 24 23 22 26 26 C 1.36368 * 121.08172 * 359.92977 * 25 24 23 27 27 C 1.39834 * 119.42013 * 0.09282 * 26 25 24 28 28 C 1.46926 * 118.74164 * 306.38962 * 15 14 13 29 29 H 0.96997 * 120.00352 * 359.72041 * 1 2 3 30 30 H 0.97001 * 119.99577 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.45742 * 301.34078 * 12 10 9 32 32 H 1.09002 * 109.45558 * 61.30835 * 12 10 9 33 33 H 1.08990 * 109.49809 * 58.58537 * 13 12 10 34 34 H 1.08997 * 109.49617 * 178.68659 * 13 12 10 35 35 H 1.08997 * 109.58590 * 174.42290 * 14 13 12 36 36 H 1.08996 * 109.58894 * 294.85036 * 14 13 12 37 37 H 1.07997 * 120.42586 * 179.70182 * 21 20 19 38 38 H 1.08007 * 120.31218 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.46644 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.46442 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.28755 * 180.02562 * 26 25 24 42 42 H 1.09001 * 109.58159 * 293.82232 * 28 15 14 43 43 H 1.08998 * 109.58601 * 173.39484 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2158 5 1 1.2850 2.7465 0.0068 6 1 3.1088 1.6937 1.2091 7 6 2.0102 -1.2020 -0.0057 8 1 3.0902 -1.2020 -0.0102 9 7 1.3256 -2.3880 -0.0058 10 6 2.0581 -3.6567 -0.0124 11 1 2.9723 -3.5520 0.5721 12 6 1.1841 -4.7544 0.5984 13 6 1.9605 -6.0731 0.6220 14 6 2.3140 -6.4786 -0.8124 15 7 3.0300 -5.3681 -1.4549 16 6 4.2302 -5.5687 -2.0346 17 8 4.7707 -4.6650 -2.6416 18 6 4.8895 -6.8889 -1.9322 19 7 4.4697 -7.9108 -2.6613 20 7 5.0073 -9.0726 -2.6150 21 6 6.0237 -9.3731 -1.8315 22 6 6.5633 -8.3787 -1.0001 23 6 7.6431 -8.6152 -0.1371 24 6 8.1119 -7.5993 0.6406 25 6 7.5356 -6.3313 0.5922 26 6 6.4851 -6.0665 -0.2360 27 6 5.9772 -7.0851 -1.0484 28 6 2.4128 -4.0347 -1.4540 29 1 -0.4850 0.8400 0.0041 30 1 0.3556 -2.3880 -0.0014 31 1 0.9100 -4.4762 1.6160 32 1 0.2816 -4.8753 -0.0007 33 1 2.8757 -5.9461 1.2001 34 1 1.3459 -6.8490 1.0784 35 1 2.9508 -7.3630 -0.7957 36 1 1.4006 -6.6938 -1.3669 37 1 6.4358 -10.3713 -1.8289 38 1 8.0988 -9.5932 -0.0895 39 1 8.9432 -7.7799 1.3060 40 1 7.9278 -5.5452 1.2204 41 1 6.0485 -5.0790 -0.2635 42 1 1.5075 -4.0508 -2.0608 43 1 3.1149 -3.3068 -1.8605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999665348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = 58.510384 kcal Electronic energy + Delta-G solvation = -27521.764278 eV Core-core repulsion = 23760.645415 eV Total energy + Delta-G solvation = -3761.118863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81367 -39.78741 -38.35164 -37.41202 -34.59324 -33.72875 -32.35224 -32.16177 -31.24660 -30.78976 -28.40327 -26.45217 -24.95065 -24.55211 -24.01933 -23.03954 -21.94667 -20.74854 -19.42879 -18.66673 -18.37410 -17.48139 -17.12187 -16.58998 -16.07676 -15.36141 -15.11387 -14.90768 -14.73685 -14.51367 -14.26700 -14.17936 -13.91555 -13.57461 -13.44597 -12.96437 -12.78651 -12.63542 -12.49489 -12.33632 -11.98715 -11.54340 -11.39764 -11.14279 -10.90551 -10.85692 -10.70067 -10.63863 -10.27060 -10.02633 -9.92040 -9.89240 -9.75870 -9.68237 -9.12281 -8.85286 -8.46677 -7.04729 -5.81731 -3.12109 -0.25126 0.23246 1.30649 2.37967 2.53837 2.85685 3.43430 3.48019 3.48908 3.49106 3.82505 3.97230 4.01950 4.19502 4.30969 4.54871 4.61401 4.65841 4.78814 4.86641 5.02390 5.08168 5.20726 5.26158 5.33922 5.42325 5.44578 5.53424 5.58285 5.74908 5.79762 5.84188 5.88534 5.93971 5.99142 6.10919 6.15247 6.24961 6.29647 6.41046 6.61211 6.74830 6.92200 7.42770 7.66964 8.06922 8.36078 8.45179 9.47989 10.01205 10.36492 11.40302 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.003342 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.007893 B = 8375.927306 C = 9021.117545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.110 3.890 15 N -0.586 5.586 16 C 0.575 3.425 17 O -0.519 6.519 18 C 0.093 3.907 19 N -0.233 5.233 20 N -0.261 5.261 21 C 0.090 3.910 22 C -0.080 4.080 23 C -0.093 4.093 24 C -0.094 4.094 25 C -0.093 4.093 26 C -0.082 4.082 27 C -0.055 4.055 28 C 0.091 3.909 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.180 0.820 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.069 0.931 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 -21.513 3.660 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.013 4.013 15 N -0.319 5.319 16 C 0.358 3.642 17 O -0.394 6.394 18 C -0.065 4.065 19 N -0.068 5.068 20 N -0.092 5.092 21 C -0.085 4.085 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.102 4.102 27 C -0.063 4.063 28 C -0.033 4.033 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.197 0.803 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.087 0.913 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.938 -21.393 2.106 25.089 hybrid contribution 1.207 1.313 0.974 2.032 sum 14.144 -20.079 3.080 24.753 Atomic orbital electron populations 1.69644 1.05142 1.25982 1.57083 1.24745 0.95502 0.97765 1.02453 0.86272 0.78589 0.83383 0.77984 1.21057 1.21643 1.21194 1.19210 0.91053 0.83950 1.43525 0.91077 1.42368 1.05859 0.99480 1.87975 1.20483 0.95039 0.86588 0.92090 0.93076 1.21837 0.98793 0.93839 1.02005 1.21896 1.00959 0.98469 0.95511 1.21745 0.97222 0.88357 0.93946 1.48223 1.17640 1.11688 1.54321 1.17534 0.81448 0.85390 0.79835 1.90859 1.64403 1.42746 1.41396 1.23106 0.93859 0.96052 0.93527 1.72977 1.22217 0.94602 1.17024 1.72675 1.08201 1.11288 1.17074 1.24764 0.92825 1.00035 0.90887 1.18848 0.97692 0.93506 0.98696 1.20979 0.94922 1.00254 0.95122 1.21151 0.99380 0.92730 0.98122 1.21192 0.95075 0.97361 0.97652 1.21113 0.96135 0.98839 0.94138 1.18593 0.95847 0.94701 0.97128 1.22995 0.98186 0.80588 1.01539 0.93333 0.77951 0.91189 0.91776 0.91703 0.90801 0.91232 0.90505 0.80274 0.84028 0.84675 0.84469 0.84066 0.91314 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.23 5.50 -17.44 -0.10 -0.33 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.71 9.93 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.35 5.12 -53.31 -0.27 -17.62 16 10 C 0.17 3.25 2.92 -67.81 -0.20 3.05 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.13 -1.94 5.35 -26.69 -0.14 -2.08 16 13 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 14 C 0.11 1.45 6.35 -3.71 -0.02 1.43 16 15 N -0.59 -9.49 2.97 -173.85 -0.52 -10.01 16 16 C 0.58 9.98 6.22 -12.29 -0.08 9.90 16 17 O -0.52 -10.76 16.54 5.33 0.09 -10.67 16 18 C 0.09 1.40 4.83 -82.42 -0.40 1.01 16 19 N -0.23 -3.59 10.95 33.56 0.37 -3.22 16 20 N -0.26 -3.46 11.42 30.90 0.35 -3.11 16 21 C 0.09 0.84 11.20 -16.75 -0.19 0.65 16 22 C -0.08 -0.78 5.75 -106.85 -0.61 -1.39 16 23 C -0.09 -0.60 9.84 -39.54 -0.39 -0.99 16 24 C -0.09 -0.59 9.95 -39.87 -0.40 -0.99 16 25 C -0.09 -0.76 9.95 -39.83 -0.40 -1.15 16 26 C -0.08 -0.93 9.45 -39.66 -0.37 -1.31 16 27 C -0.06 -0.69 5.77 -106.57 -0.61 -1.30 16 28 C 0.09 1.70 6.00 -3.71 -0.02 1.68 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 9.88 7.80 -40.82 -0.32 9.57 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.88 6.00 -51.93 -0.31 0.57 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.14 1.78 7.33 -52.48 -0.38 1.39 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.09 2.02 7.03 -51.93 -0.37 1.65 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -33.85 359.48 -8.68 -42.53 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.57 Total: 6.76 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -4.24 Total: -0.44 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.65 Total: -60.86 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.85 -8.68 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999665348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.040 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds