Wall clock time and date at job start Tue Mar 31 2020 15:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48497 * 109.47188 * 240.27734 * 3 2 1 5 5 H 1.48508 * 109.47023 * 0.27709 * 3 2 1 6 6 H 1.48494 * 109.47223 * 120.27128 * 3 2 1 7 7 C 1.38804 * 120.00379 * 180.27401 * 2 1 3 8 8 H 1.08001 * 120.00250 * 179.72651 * 7 2 1 9 9 N 1.36944 * 119.99984 * 359.72699 * 7 2 1 10 10 C 1.46496 * 120.00124 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49724 * 34.92797 * 10 9 7 12 12 C 1.53037 * 109.50027 * 154.99731 * 10 9 7 13 13 C 1.53039 * 109.54058 * 181.31617 * 12 10 9 14 14 C 1.53193 * 109.31122 * 298.63416 * 13 12 10 15 15 N 1.46928 * 108.77412 * 54.63610 * 14 13 12 16 16 C 1.34782 * 120.63235 * 126.41178 * 15 14 13 17 17 O 1.21540 * 120.00345 * 174.98733 * 16 15 14 18 18 C 1.47917 * 119.99665 * 354.98799 * 16 15 14 19 19 N 1.32369 * 120.63577 * 75.60403 * 18 16 15 20 20 N 1.28093 * 123.17729 * 179.73261 * 19 18 16 21 21 C 1.31803 * 123.49660 * 0.56988 * 20 19 18 22 22 C 1.40398 * 119.13726 * 359.72320 * 21 20 19 23 23 C 1.40238 * 122.74354 * 179.97438 * 22 21 20 24 24 C 1.36253 * 119.37069 * 180.02562 * 23 22 21 25 25 C 1.39374 * 121.07899 * 0.02562 * 24 23 22 26 26 C 1.36368 * 121.08172 * 359.92977 * 25 24 23 27 27 C 1.39834 * 119.42013 * 0.09282 * 26 25 24 28 28 C 1.46926 * 118.74164 * 306.38962 * 15 14 13 29 29 H 0.96997 * 120.00352 * 359.72041 * 1 2 3 30 30 H 0.97001 * 119.99577 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.45742 * 301.34078 * 12 10 9 32 32 H 1.09002 * 109.45558 * 61.30835 * 12 10 9 33 33 H 1.08990 * 109.49809 * 58.58537 * 13 12 10 34 34 H 1.08997 * 109.49617 * 178.68659 * 13 12 10 35 35 H 1.08997 * 109.58590 * 174.42290 * 14 13 12 36 36 H 1.08996 * 109.58894 * 294.85036 * 14 13 12 37 37 H 1.07997 * 120.42586 * 179.70182 * 21 20 19 38 38 H 1.08007 * 120.31218 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.46644 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.46442 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.28755 * 180.02562 * 26 25 24 42 42 H 1.09001 * 109.58159 * 293.82232 * 28 15 14 43 43 H 1.08998 * 109.58601 * 173.39484 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2158 5 1 1.2850 2.7465 0.0068 6 1 3.1088 1.6937 1.2091 7 6 2.0102 -1.2020 -0.0057 8 1 3.0902 -1.2020 -0.0102 9 7 1.3256 -2.3880 -0.0058 10 6 2.0581 -3.6567 -0.0124 11 1 2.9723 -3.5520 0.5721 12 6 1.1841 -4.7544 0.5984 13 6 1.9605 -6.0731 0.6220 14 6 2.3140 -6.4786 -0.8124 15 7 3.0300 -5.3681 -1.4549 16 6 4.2302 -5.5687 -2.0346 17 8 4.7707 -4.6650 -2.6416 18 6 4.8895 -6.8889 -1.9322 19 7 4.4697 -7.9108 -2.6613 20 7 5.0073 -9.0726 -2.6150 21 6 6.0237 -9.3731 -1.8315 22 6 6.5633 -8.3787 -1.0001 23 6 7.6431 -8.6152 -0.1371 24 6 8.1119 -7.5993 0.6406 25 6 7.5356 -6.3313 0.5922 26 6 6.4851 -6.0665 -0.2360 27 6 5.9772 -7.0851 -1.0484 28 6 2.4128 -4.0347 -1.4540 29 1 -0.4850 0.8400 0.0041 30 1 0.3556 -2.3880 -0.0014 31 1 0.9100 -4.4762 1.6160 32 1 0.2816 -4.8753 -0.0007 33 1 2.8757 -5.9461 1.2001 34 1 1.3459 -6.8490 1.0784 35 1 2.9508 -7.3630 -0.7957 36 1 1.4006 -6.6938 -1.3669 37 1 6.4358 -10.3713 -1.8289 38 1 8.0988 -9.5932 -0.0895 39 1 8.9432 -7.7799 1.3060 40 1 7.9278 -5.5452 1.2204 41 1 6.0485 -5.0790 -0.2635 42 1 1.5075 -4.0508 -2.0608 43 1 3.1149 -3.3068 -1.8605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999665348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:58 Heat of formation + Delta-G solvation = 35.283511 kcal Electronic energy + Delta-G solvation = -27522.771470 eV Core-core repulsion = 23760.645415 eV Total energy + Delta-G solvation = -3762.126056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.70623 -41.06968 -39.09157 -38.85768 -36.31482 -34.73245 -33.85327 -32.92677 -32.85303 -31.57862 -30.11438 -27.59349 -26.00963 -25.86916 -25.37326 -23.88901 -23.37626 -22.02516 -20.72740 -19.53161 -19.29329 -19.11699 -18.51820 -17.70395 -17.04149 -16.86438 -16.23623 -15.97251 -15.75908 -15.72618 -15.52226 -15.36704 -15.20190 -15.03610 -14.77343 -14.17323 -14.02133 -13.82763 -13.67562 -13.24819 -13.14583 -12.90982 -12.73016 -12.57936 -12.38397 -12.28202 -12.12975 -12.00073 -11.76919 -11.74592 -11.41747 -11.20861 -11.07294 -10.85140 -10.45427 -9.95348 -9.59968 -9.06783 -7.99034 -5.28964 -1.02810 -0.51874 0.56679 1.10735 1.44260 1.47553 1.53133 1.57807 1.81165 2.52654 2.69088 2.82633 3.17283 3.26001 3.33990 3.52457 3.59354 3.63770 3.78963 3.91094 3.93948 4.07604 4.11737 4.18461 4.23251 4.29084 4.39783 4.45678 4.52818 4.62139 4.72537 4.76910 4.79537 4.84421 4.93455 5.02688 5.12641 5.24296 5.26603 5.31697 5.33134 5.38525 5.49268 5.68029 6.09504 6.22711 6.72537 7.30037 7.55867 8.00714 8.26442 9.23388 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.003342 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.007893 B = 8375.927306 C = 9021.117545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.171 3.829 11 H 0.040 0.960 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.109 3.891 15 N -0.584 5.584 16 C 0.575 3.425 17 O -0.569 6.569 18 C 0.070 3.930 19 N -0.258 5.258 20 N -0.300 5.300 21 C 0.115 3.885 22 C -0.093 4.093 23 C -0.070 4.070 24 C -0.090 4.090 25 C -0.077 4.077 26 C -0.122 4.122 27 C -0.072 4.072 28 C 0.105 3.895 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.191 0.809 39 H 0.178 0.822 40 H 0.156 0.844 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.470 -25.123 5.727 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.367 5.367 10 C 0.061 3.939 11 H 0.058 0.942 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.012 4.012 15 N -0.315 5.315 16 C 0.360 3.640 17 O -0.448 6.448 18 C -0.089 4.089 19 N -0.093 5.093 20 N -0.130 5.130 21 C -0.058 4.058 22 C -0.100 4.100 23 C -0.089 4.089 24 C -0.109 4.109 25 C -0.096 4.096 26 C -0.142 4.142 27 C -0.079 4.079 28 C -0.020 4.020 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.208 0.792 39 H 0.196 0.804 40 H 0.174 0.826 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.665 -25.072 4.186 29.858 hybrid contribution 0.559 2.274 0.395 2.375 sum 16.224 -22.798 4.581 28.354 Atomic orbital electron populations 1.69781 1.06389 1.26305 1.58863 1.25486 0.96349 1.00824 1.03209 0.85307 0.77390 0.79541 0.78114 1.21050 1.21719 1.20065 1.19502 0.91172 0.85321 1.41985 0.91346 1.42494 1.05578 1.00470 1.88134 1.20612 0.95016 0.86140 0.92146 0.94199 1.21734 0.98449 0.93855 1.01506 1.21848 1.01161 0.97487 0.95005 1.21965 0.97377 0.87532 0.94365 1.48205 1.17671 1.11325 1.54327 1.17997 0.81167 0.86234 0.78647 1.90802 1.65610 1.44819 1.43533 1.22630 0.95636 0.94683 0.95974 1.72857 1.23545 0.95382 1.17472 1.72595 1.10654 1.10256 1.19522 1.25562 0.90416 1.01773 0.88083 1.19181 0.98849 0.92111 0.99857 1.21560 0.92549 1.02344 0.92445 1.21645 0.99822 0.91269 0.98180 1.21560 0.93064 0.99198 0.95758 1.20975 0.98639 0.97743 0.96858 1.18725 0.95585 0.96561 0.97059 1.22491 0.97018 0.81656 1.00846 0.93798 0.78905 0.91123 0.91348 0.91526 0.87089 0.90153 0.89516 0.75158 0.79155 0.80422 0.82600 0.87222 0.91806 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.83 13.06 21.65 0.28 -58.55 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.25 -14.03 9.93 84.03 0.83 -13.19 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.73 -36.74 5.12 -322.58 -1.65 -38.39 16 10 C 0.17 6.86 2.92 45.07 0.13 6.99 16 11 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 12 C -0.12 -3.57 5.35 30.62 0.16 -3.41 16 13 C -0.12 -2.69 6.08 30.67 0.19 -2.51 16 14 C 0.11 2.85 6.35 86.36 0.55 3.40 16 15 N -0.58 -20.10 2.97 -822.23 -2.44 -22.54 16 16 C 0.57 21.60 6.22 86.81 0.54 22.14 16 17 O -0.57 -26.03 16.54 -3.84 -0.06 -26.09 16 18 C 0.07 2.20 4.83 42.44 0.20 2.41 16 19 N -0.26 -8.11 10.95 -47.73 -0.52 -8.63 16 20 N -0.30 -7.58 11.42 -56.16 -0.64 -8.22 16 21 C 0.12 1.77 11.20 85.22 0.95 2.73 16 22 C -0.09 -1.51 5.75 -21.31 -0.12 -1.63 16 23 C -0.07 -0.50 9.84 22.29 0.22 -0.28 16 24 C -0.09 -0.65 9.95 22.08 0.22 -0.43 16 25 C -0.08 -1.06 9.95 22.11 0.22 -0.84 16 26 C -0.12 -2.82 9.45 22.22 0.21 -2.61 16 27 C -0.07 -1.80 5.77 -21.13 -0.12 -1.92 16 28 C 0.10 4.24 6.00 86.36 0.52 4.76 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.38 20.13 7.80 -92.71 -0.72 19.41 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.00 6.00 -2.39 -0.01 1.98 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.23 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.19 -0.42 8.06 -2.91 -0.02 -0.45 16 39 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.11 3.12 7.33 -2.91 -0.02 3.10 16 42 H 0.06 2.60 8.14 -2.39 -0.02 2.59 16 43 H 0.06 2.72 7.03 -2.39 -0.02 2.70 16 Total: -1.00 -81.18 359.48 2.48 -78.70 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.32 Total: 22.49 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.17 Total: 12.25 kcal Atomic # 7 Polarization: -131.35 SS G_CDS: -4.98 Total: -136.33 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.18 2.48 -78.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999665348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.982 kcal (2) G-P(sol) polarization free energy of solvation -81.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds