Wall clock time and date at job start Tue Mar 31 2020 15:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47117 * 269.99850 * 3 2 1 5 5 H 1.48500 * 109.47099 * 29.99992 * 3 2 1 6 6 H 1.48499 * 109.46727 * 149.99998 * 3 2 1 7 7 C 1.38812 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49346 * 34.93886 * 10 9 7 12 12 C 1.53045 * 109.49918 * 154.99855 * 10 9 7 13 13 C 1.53038 * 109.53680 * 181.31637 * 12 10 9 14 14 C 1.53185 * 109.31729 * 298.63888 * 13 12 10 15 15 N 1.46927 * 108.77483 * 54.63446 * 14 13 12 16 16 C 1.34777 * 120.62981 * 126.37325 * 15 14 13 17 17 O 1.21542 * 120.00530 * 0.26067 * 16 15 14 18 18 C 1.47925 * 119.99863 * 180.26702 * 16 15 14 19 19 C 1.38934 * 119.84671 * 158.51025 * 18 16 15 20 20 C 1.40652 * 117.38900 * 179.97438 * 19 18 16 21 21 C 1.40256 * 122.03511 * 180.02562 * 20 19 18 22 22 C 1.36275 * 119.46971 * 179.76528 * 21 20 19 23 23 C 1.39319 * 120.87352 * 0.46775 * 22 21 20 24 24 C 1.36231 * 121.16029 * 359.50575 * 23 22 21 25 25 C 1.40339 * 119.68078 * 0.25069 * 24 23 22 26 26 N 1.33809 * 121.62742 * 180.02562 * 25 24 23 27 27 N 1.28438 * 121.69195 * 180.02562 * 26 25 24 28 28 C 1.46927 * 118.74004 * 306.64216 * 15 14 13 29 29 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99986 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.45442 * 61.30183 * 12 10 9 32 32 H 1.08997 * 109.46075 * 301.33806 * 12 10 9 33 33 H 1.08998 * 109.49960 * 178.68261 * 13 12 10 34 34 H 1.09000 * 109.49532 * 58.59115 * 13 12 10 35 35 H 1.09005 * 109.58752 * 294.85291 * 14 13 12 36 36 H 1.08995 * 109.59231 * 174.42016 * 14 13 12 37 37 H 1.07997 * 121.30682 * 359.97438 * 19 18 16 38 38 H 1.07998 * 120.26258 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.56433 * 180.22898 * 22 21 20 40 40 H 1.07998 * 119.42118 * 179.77477 * 23 22 21 41 41 H 1.08000 * 120.16497 * 180.27391 * 24 23 22 42 42 H 1.09005 * 109.58998 * 173.14381 * 28 15 14 43 43 H 1.08995 * 109.58951 * 293.57483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9694 -3.5506 0.5879 12 6 1.1811 -4.7529 0.6092 13 6 1.9573 -6.0714 0.6397 14 6 2.3174 -6.4807 -0.7919 15 7 3.0365 -5.3720 -1.4340 16 6 4.2396 -5.5741 -2.0069 17 8 4.7376 -6.6827 -1.9997 18 6 4.9540 -4.4465 -2.6444 19 6 6.3291 -4.5156 -2.8299 20 6 6.9556 -3.4148 -3.4416 21 6 8.3379 -3.3815 -3.6766 22 6 8.8897 -2.2899 -4.2776 23 6 8.1005 -1.2046 -4.6519 24 6 6.7550 -1.2046 -4.4387 25 6 6.1483 -2.3124 -3.8269 26 7 4.8304 -2.3539 -3.5993 27 7 4.2740 -3.3669 -3.0390 28 6 2.4218 -4.0374 -1.4345 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.2812 -4.8751 0.0064 32 1 0.9024 -4.4720 1.6248 33 1 1.3407 -6.8462 1.0954 34 1 2.8699 -5.9430 1.2218 35 1 1.4065 -6.6974 -1.3501 36 1 2.9541 -7.3651 -0.7700 37 1 6.8949 -5.3806 -2.5168 38 1 8.9595 -4.2160 -3.3874 39 1 9.9534 -2.2642 -4.4626 40 1 8.5628 -0.3500 -5.1234 41 1 6.1578 -0.3564 -4.7394 42 1 3.1274 -3.3102 -1.8364 43 1 1.5197 -4.0509 -2.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999858551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:59 Heat of formation + Delta-G solvation = 76.557896 kcal Electronic energy + Delta-G solvation = -27595.729223 eV Core-core repulsion = 23835.392960 eV Total energy + Delta-G solvation = -3760.336264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55482 -39.83610 -37.90202 -37.35627 -34.28366 -33.83987 -32.78138 -31.69683 -31.11590 -30.53202 -28.16343 -25.94326 -25.50816 -24.29479 -23.83448 -22.63581 -21.88465 -20.72048 -19.52542 -18.83567 -18.14377 -17.07910 -16.76247 -16.28827 -15.81193 -15.64893 -14.93827 -14.79930 -14.58557 -14.44352 -14.26106 -13.81701 -13.75724 -13.51365 -13.35885 -12.86124 -12.72117 -12.47234 -12.41673 -12.24396 -11.98134 -11.45788 -11.08893 -10.96946 -10.90506 -10.79777 -10.58351 -10.51000 -10.29739 -10.03931 -9.83181 -9.65925 -9.64487 -9.18403 -8.96662 -8.63107 -8.32578 -6.94690 -5.74520 -3.03395 -0.22866 0.24846 1.50553 2.26044 2.98846 3.08083 3.46267 3.51157 3.51955 3.73468 3.84504 4.10660 4.26184 4.32473 4.50825 4.61004 4.72360 4.76234 4.87734 5.12752 5.20985 5.29390 5.33842 5.42423 5.45014 5.54014 5.59462 5.65839 5.81303 5.85721 5.90390 5.96981 5.99090 6.02515 6.16639 6.24369 6.32424 6.38605 6.40864 6.56606 6.74870 6.99724 7.06367 7.58701 7.73022 8.14433 8.43446 8.51127 9.55442 10.09614 10.45369 11.47910 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.005407 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.418701 B = 5177.319323 C = 8066.088380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.067 0.933 9 N -0.716 5.716 10 C 0.167 3.833 11 H 0.046 0.954 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.110 3.890 15 N -0.580 5.580 16 C 0.575 3.425 17 O -0.550 6.550 18 C -0.004 4.004 19 C -0.036 4.036 20 C -0.074 4.074 21 C -0.097 4.097 22 C -0.098 4.098 23 C -0.098 4.098 24 C -0.074 4.074 25 C 0.071 3.929 26 N -0.195 5.195 27 N -0.169 5.169 28 C 0.059 3.941 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.469 -9.274 -7.379 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.356 5.356 10 C 0.056 3.944 11 H 0.064 0.936 12 C -0.166 4.166 13 C -0.167 4.167 14 C -0.012 4.012 15 N -0.311 5.311 16 C 0.360 3.640 17 O -0.428 6.428 18 C -0.136 4.136 19 C -0.066 4.066 20 C -0.082 4.082 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.056 4.056 26 N -0.050 5.050 27 N -0.026 5.026 28 C -0.067 4.067 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.150 0.850 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.395 -9.024 -7.434 18.544 hybrid contribution 1.367 0.410 0.115 1.432 sum 15.762 -8.613 -7.319 19.395 Atomic orbital electron populations 1.69654 1.05051 1.25644 1.57582 1.24688 0.95443 0.97541 1.02775 0.86248 0.78633 0.84043 0.77661 1.21464 1.21797 1.20933 1.19161 0.90800 0.83983 1.42770 0.91497 1.42340 1.05798 0.99443 1.88053 1.20432 0.94775 0.86630 0.92592 0.93638 1.21857 0.98794 0.94174 1.01801 1.21872 1.00813 0.98171 0.95855 1.21684 0.96624 0.89640 0.93285 1.48203 1.17623 1.12015 1.53219 1.17553 0.81212 0.86407 0.78823 1.90745 1.67361 1.23654 1.61068 1.22594 0.93160 0.96049 1.01801 1.22465 0.93973 0.97715 0.92453 1.18800 0.95647 0.94485 0.99278 1.20999 0.92453 0.99391 0.98757 1.21097 1.00650 0.93110 0.96901 1.21084 0.93444 0.98719 0.98554 1.20894 0.94953 0.96832 0.96817 1.20502 0.92245 0.94855 0.98000 1.74066 1.08054 1.16573 1.06332 1.73495 1.29972 0.96094 1.03079 1.23864 1.00178 0.81406 1.01211 0.93507 0.77989 0.91923 0.91448 0.90883 0.91717 0.91206 0.89312 0.81951 0.84334 0.84792 0.84529 0.83514 0.85008 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.89 5.12 -53.53 -0.27 -18.17 16 10 C 0.17 3.39 2.91 -68.03 -0.20 3.19 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.13 -2.11 5.36 -26.69 -0.14 -2.25 16 13 C -0.13 -1.74 6.08 -26.62 -0.16 -1.90 16 14 C 0.11 1.56 6.43 -3.71 -0.02 1.53 16 15 N -0.58 -9.79 2.98 -174.12 -0.52 -10.31 16 16 C 0.57 9.92 7.61 -12.29 -0.09 9.83 16 17 O -0.55 -9.93 15.97 5.33 0.09 -9.85 16 18 C 0.00 -0.06 6.52 -82.89 -0.54 -0.60 16 19 C -0.04 -0.48 9.51 -38.41 -0.37 -0.84 16 20 C -0.07 -0.92 5.75 -106.80 -0.61 -1.54 16 21 C -0.10 -0.85 9.81 -39.53 -0.39 -1.24 16 22 C -0.10 -0.72 9.96 -39.89 -0.40 -1.11 16 23 C -0.10 -0.79 9.94 -39.90 -0.40 -1.18 16 24 C -0.07 -0.83 10.00 -39.51 -0.40 -1.22 16 25 C 0.07 1.03 6.69 -84.79 -0.57 0.46 16 26 N -0.20 -3.48 11.55 32.24 0.37 -3.10 16 27 N -0.17 -3.11 7.51 33.24 0.25 -2.86 16 28 C 0.06 1.12 5.54 -3.93 -0.02 1.10 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 30 H 0.39 10.16 7.80 -40.82 -0.32 9.85 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 37 H 0.16 1.78 7.84 -52.49 -0.41 1.37 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.13 2.78 3.97 -122.01 -0.48 2.30 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -33.39 356.50 -9.33 -42.73 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.77 Total: 8.69 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -4.55 Total: -2.85 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.55 Total: -61.75 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.39 -9.33 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999858551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.286 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds