Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47117 * 269.99850 * 3 2 1 5 5 H 1.48500 * 109.47099 * 29.99992 * 3 2 1 6 6 H 1.48499 * 109.46727 * 149.99998 * 3 2 1 7 7 C 1.38812 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00232 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49346 * 34.93886 * 10 9 7 12 12 C 1.53045 * 109.49918 * 154.99855 * 10 9 7 13 13 C 1.53038 * 109.53680 * 181.31637 * 12 10 9 14 14 C 1.53185 * 109.31729 * 298.63888 * 13 12 10 15 15 N 1.46927 * 108.77483 * 54.63446 * 14 13 12 16 16 C 1.34777 * 120.62981 * 126.37325 * 15 14 13 17 17 O 1.21542 * 120.00530 * 0.26067 * 16 15 14 18 18 C 1.47925 * 119.99863 * 180.26702 * 16 15 14 19 19 C 1.38934 * 119.84671 * 158.51025 * 18 16 15 20 20 C 1.40652 * 117.38900 * 179.97438 * 19 18 16 21 21 C 1.40256 * 122.03511 * 180.02562 * 20 19 18 22 22 C 1.36275 * 119.46971 * 179.76528 * 21 20 19 23 23 C 1.39319 * 120.87352 * 0.46775 * 22 21 20 24 24 C 1.36231 * 121.16029 * 359.50575 * 23 22 21 25 25 C 1.40339 * 119.68078 * 0.25069 * 24 23 22 26 26 N 1.33809 * 121.62742 * 180.02562 * 25 24 23 27 27 N 1.28438 * 121.69195 * 180.02562 * 26 25 24 28 28 C 1.46927 * 118.74004 * 306.64216 * 15 14 13 29 29 H 0.97005 * 120.00152 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99986 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.45442 * 61.30183 * 12 10 9 32 32 H 1.08997 * 109.46075 * 301.33806 * 12 10 9 33 33 H 1.08998 * 109.49960 * 178.68261 * 13 12 10 34 34 H 1.09000 * 109.49532 * 58.59115 * 13 12 10 35 35 H 1.09005 * 109.58752 * 294.85291 * 14 13 12 36 36 H 1.08995 * 109.59231 * 174.42016 * 14 13 12 37 37 H 1.07997 * 121.30682 * 359.97438 * 19 18 16 38 38 H 1.07998 * 120.26258 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.56433 * 180.22898 * 22 21 20 40 40 H 1.07998 * 119.42118 * 179.77477 * 23 22 21 41 41 H 1.08000 * 120.16497 * 180.27391 * 24 23 22 42 42 H 1.09005 * 109.58998 * 173.14381 * 28 15 14 43 43 H 1.08995 * 109.58951 * 293.57483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9694 -3.5506 0.5879 12 6 1.1811 -4.7529 0.6092 13 6 1.9573 -6.0714 0.6397 14 6 2.3174 -6.4807 -0.7919 15 7 3.0365 -5.3720 -1.4340 16 6 4.2396 -5.5741 -2.0069 17 8 4.7376 -6.6827 -1.9997 18 6 4.9540 -4.4465 -2.6444 19 6 6.3291 -4.5156 -2.8299 20 6 6.9556 -3.4148 -3.4416 21 6 8.3379 -3.3815 -3.6766 22 6 8.8897 -2.2899 -4.2776 23 6 8.1005 -1.2046 -4.6519 24 6 6.7550 -1.2046 -4.4387 25 6 6.1483 -2.3124 -3.8269 26 7 4.8304 -2.3539 -3.5993 27 7 4.2740 -3.3669 -3.0390 28 6 2.4218 -4.0374 -1.4345 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.2812 -4.8751 0.0064 32 1 0.9024 -4.4720 1.6248 33 1 1.3407 -6.8462 1.0954 34 1 2.8699 -5.9430 1.2218 35 1 1.4065 -6.6974 -1.3501 36 1 2.9541 -7.3651 -0.7700 37 1 6.8949 -5.3806 -2.5168 38 1 8.9595 -4.2160 -3.3874 39 1 9.9534 -2.2642 -4.4626 40 1 8.5628 -0.3500 -5.1234 41 1 6.1578 -0.3564 -4.7394 42 1 3.1274 -3.3102 -1.8364 43 1 1.5197 -4.0509 -2.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999858551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = 54.522840 kcal Electronic energy + Delta-G solvation = -27596.684735 eV Core-core repulsion = 23835.392960 eV Total energy + Delta-G solvation = -3761.291776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61514 -41.08778 -38.90288 -38.73420 -36.09059 -34.87134 -34.09144 -33.24280 -32.39538 -31.47029 -29.92391 -27.14547 -26.54092 -25.89208 -25.34676 -23.53224 -23.23322 -22.15162 -20.82616 -19.80610 -19.32691 -19.10849 -17.86008 -17.42666 -16.99986 -16.87218 -16.53453 -15.93971 -15.72777 -15.55042 -15.50547 -15.43146 -15.18473 -14.91297 -14.50586 -14.28212 -13.97865 -13.80669 -13.42301 -13.32960 -13.01796 -12.93049 -12.86137 -12.54246 -12.29418 -12.15878 -12.01074 -11.93306 -11.87802 -11.65211 -11.52527 -11.16134 -10.99314 -10.64897 -10.29668 -9.85369 -9.45202 -8.98771 -7.95280 -5.23798 -1.16151 -0.74745 0.63594 1.19666 1.42565 1.46139 1.52500 1.76552 1.98368 2.53568 2.67497 2.80156 3.16247 3.21636 3.38397 3.42383 3.65567 3.72905 3.84410 4.00467 4.01749 4.11901 4.15484 4.22146 4.35273 4.39759 4.41992 4.50200 4.60176 4.66498 4.77986 4.89943 4.91044 4.95834 5.03842 5.07420 5.15231 5.23785 5.30802 5.39339 5.42275 5.50004 5.59333 5.70646 6.18216 6.27967 6.82662 7.33633 7.38725 8.04979 8.31106 9.27728 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.005407 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.418701 B = 5177.319323 C = 8066.088380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.962 3.038 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.061 0.939 9 N -0.726 5.726 10 C 0.166 3.834 11 H 0.029 0.971 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.105 3.895 15 N -0.583 5.583 16 C 0.576 3.424 17 O -0.560 6.560 18 C -0.038 4.038 19 C -0.025 4.025 20 C -0.084 4.084 21 C -0.096 4.096 22 C -0.083 4.083 23 C -0.069 4.069 24 C -0.108 4.108 25 C 0.052 3.948 26 N -0.241 5.241 27 N -0.205 5.205 28 C 0.073 3.927 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.159 -9.952 -7.892 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.258 4.258 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.366 4.366 8 H 0.079 0.921 9 N -0.366 5.366 10 C 0.056 3.944 11 H 0.047 0.953 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.016 4.016 15 N -0.313 5.313 16 C 0.362 3.638 17 O -0.440 6.440 18 C -0.171 4.171 19 C -0.054 4.054 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.089 4.089 24 C -0.129 4.129 25 C -0.076 4.076 26 N -0.096 5.096 27 N -0.062 5.062 28 C -0.053 4.053 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.204 0.796 38 H 0.191 0.809 39 H 0.199 0.801 40 H 0.193 0.807 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.101 -9.743 -7.945 22.038 hybrid contribution 0.490 0.625 0.156 0.809 sum 18.590 -9.118 -7.788 22.122 Atomic orbital electron populations 1.69789 1.06283 1.26006 1.59348 1.25406 0.96296 1.00550 1.03571 0.85308 0.77762 0.80294 0.77474 1.21455 1.21591 1.19999 1.19371 0.90675 0.85314 1.41237 0.92118 1.42457 1.05469 1.00441 1.88256 1.20576 0.94445 0.86097 0.93279 0.95293 1.21768 0.98564 0.94388 1.01127 1.21822 1.00762 0.97199 0.95672 1.21920 0.97132 0.88967 0.93595 1.48176 1.17838 1.11600 1.53642 1.17687 0.81092 0.86550 0.78482 1.90715 1.67574 1.23977 1.61764 1.22601 0.94625 0.95941 1.03930 1.22777 0.92882 0.98631 0.91154 1.19111 0.97400 0.93489 0.99231 1.21450 0.90633 1.01182 0.98157 1.21690 1.02762 0.91512 0.94250 1.21626 0.91895 0.99880 0.95511 1.21086 0.96701 0.96408 0.98742 1.20948 0.91470 0.96700 0.98519 1.73888 1.10529 1.16968 1.08172 1.73277 1.31362 0.96958 1.04606 1.23377 0.99467 0.82768 0.99686 0.93921 0.79010 0.91492 0.91797 0.87240 0.92075 0.89816 0.88420 0.79569 0.80930 0.80141 0.80689 0.83718 0.86439 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.96 47.78 29.55 68.60 2.03 49.81 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.23 -13.55 9.93 84.03 0.83 -12.71 16 8 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 9 N -0.73 -37.90 5.12 -323.26 -1.66 -39.56 16 10 C 0.17 6.99 2.91 44.93 0.13 7.12 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.97 5.36 30.62 0.16 -3.81 16 13 C -0.12 -2.98 6.08 30.67 0.19 -2.79 16 14 C 0.10 2.87 6.43 86.36 0.56 3.43 16 15 N -0.58 -20.11 2.98 -823.06 -2.45 -22.56 16 16 C 0.58 20.33 7.61 86.81 0.66 20.99 16 17 O -0.56 -20.13 15.97 -3.85 -0.06 -20.19 16 18 C -0.04 -1.30 6.52 41.62 0.27 -1.03 16 19 C -0.02 -0.66 9.51 23.03 0.22 -0.44 16 20 C -0.08 -2.00 5.75 -21.28 -0.12 -2.12 16 21 C -0.10 -1.30 9.81 22.30 0.22 -1.08 16 22 C -0.08 -0.76 9.96 22.07 0.22 -0.54 16 23 C -0.07 -0.83 9.94 22.06 0.22 -0.61 16 24 C -0.11 -2.33 10.00 22.31 0.22 -2.10 16 25 C 0.05 1.52 6.69 40.28 0.27 1.78 16 26 N -0.24 -9.20 11.55 -51.93 -0.60 -9.80 16 27 N -0.21 -8.12 7.51 -48.75 -0.37 -8.49 16 28 C 0.07 2.95 5.54 86.22 0.48 3.43 16 29 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 30 H 0.38 20.75 7.80 -92.70 -0.72 20.03 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.10 2.55 7.00 -2.39 -0.02 2.54 16 37 H 0.19 3.80 7.84 -2.91 -0.02 3.78 16 38 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 40 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 41 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.12 5.33 3.97 -93.05 -0.37 4.96 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -77.84 356.50 2.14 -75.70 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.03 Total: 28.51 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.00 Total: 6.11 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -4.79 Total: -139.94 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -77.84 2.14 -75.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999858551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.224 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds