Wall clock time and date at job start Tue Mar 31 2020 15:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00705 * 2 1 4 4 H 1.48501 * 109.47142 * 270.00625 * 3 2 1 5 5 H 1.48502 * 109.46808 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.47186 * 150.00171 * 3 2 1 7 7 C 1.38818 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99702 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49641 * 325.05982 * 10 9 7 12 12 C 1.53037 * 109.49374 * 204.99649 * 10 9 7 13 13 C 1.53046 * 109.53717 * 178.64888 * 12 10 9 14 14 C 1.53195 * 109.33511 * 61.35157 * 13 12 10 15 15 N 1.46932 * 108.77241 * 305.41298 * 14 13 12 16 16 C 1.34772 * 120.60942 * 233.57856 * 15 14 13 17 17 O 1.21540 * 120.00665 * 174.18812 * 16 15 14 18 18 C 1.47871 * 119.99537 * 354.19315 * 16 15 14 19 19 C 1.38952 * 121.42309 * 306.18503 * 18 16 15 20 20 N 1.32585 * 120.33891 * 180.02562 * 19 18 16 21 21 N 1.28371 * 123.43416 * 0.02562 * 20 19 18 22 22 C 1.33461 * 121.85576 * 359.97438 * 21 20 19 23 23 C 1.40587 * 121.73896 * 179.97438 * 22 21 20 24 24 C 1.36111 * 119.61109 * 180.02562 * 23 22 21 25 25 C 1.39379 * 121.13177 * 0.02562 * 24 23 22 26 26 C 1.36342 * 120.88379 * 359.97438 * 25 24 23 27 27 C 1.39861 * 119.50083 * 359.71396 * 26 25 24 28 28 C 1.46929 * 118.76401 * 53.55762 * 15 14 13 29 29 H 0.97010 * 119.99141 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00467 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.45972 * 58.63628 * 12 10 9 32 32 H 1.09002 * 109.46559 * 298.67296 * 12 10 9 33 33 H 1.08993 * 109.49971 * 181.31852 * 13 12 10 34 34 H 1.08999 * 109.49910 * 301.38700 * 13 12 10 35 35 H 1.09001 * 109.58550 * 65.16921 * 14 13 12 36 36 H 1.08997 * 109.58676 * 185.59656 * 14 13 12 37 37 H 1.07999 * 119.83056 * 0.02584 * 19 18 16 38 38 H 1.07997 * 120.19059 * 0.04263 * 23 22 21 39 39 H 1.08002 * 119.43687 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.55724 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.24714 * 179.97438 * 26 25 24 42 42 H 1.09001 * 109.58795 * 186.62760 * 28 15 14 43 43 H 1.08996 * 109.70351 * 66.27137 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2024 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 1 2.9686 -3.5506 -0.5908 12 6 1.1802 -4.7526 -0.6111 13 6 1.9566 -6.0712 -0.6437 14 6 2.3190 -6.4818 0.7870 15 7 3.0380 -5.3731 1.4294 16 6 4.2416 -5.5755 2.0011 17 8 4.8743 -4.6331 2.4356 18 6 4.7924 -6.9442 2.0997 19 6 4.0682 -7.9763 2.6837 20 7 4.5832 -9.1955 2.7612 21 7 5.7487 -9.5005 2.3179 22 6 6.5399 -8.5965 1.7364 23 6 7.8162 -8.9331 1.2523 24 6 8.5873 -7.9764 0.6669 25 6 8.1341 -6.6646 0.5385 26 6 6.9021 -6.3017 0.9962 27 6 6.0807 -7.2610 1.5972 28 6 2.4206 -4.0399 1.4365 29 1 -0.4849 0.8402 0.0004 30 1 0.3553 -2.3880 0.0002 31 1 0.9003 -4.4710 -1.6262 32 1 0.2810 -4.8755 -0.0074 33 1 1.3395 -6.8455 -1.0992 34 1 2.8682 -5.9423 -1.2271 35 1 1.4091 -6.6995 1.3463 36 1 2.9560 -7.3659 0.7631 37 1 3.0806 -7.7843 3.0765 38 1 8.1824 -9.9449 1.3441 39 1 9.5671 -8.2381 0.2956 40 1 8.7670 -5.9258 0.0693 41 1 6.5615 -5.2823 0.8917 42 1 3.1250 -3.3132 1.8415 43 1 1.5192 -4.0555 2.0491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000297406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:02 Heat of formation + Delta-G solvation = 62.758016 kcal Electronic energy + Delta-G solvation = -27369.376904 eV Core-core repulsion = 23608.442232 eV Total energy + Delta-G solvation = -3760.934672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83013 -39.92134 -38.17627 -37.48635 -34.74513 -33.93148 -32.42246 -31.96819 -31.29722 -30.70879 -28.43604 -26.59775 -24.99280 -24.61272 -24.07107 -22.94152 -22.02284 -20.59495 -19.43018 -18.87216 -18.59381 -17.44313 -17.15725 -16.34950 -15.87171 -15.54188 -15.42199 -15.04969 -14.65610 -14.60303 -14.35571 -14.21253 -13.72196 -13.65121 -13.42365 -12.94653 -12.75001 -12.70511 -12.51937 -12.43879 -12.18345 -11.51107 -11.24138 -11.16822 -10.97748 -10.90497 -10.77758 -10.69785 -10.54166 -10.27481 -9.92776 -9.82079 -9.72309 -9.65573 -9.17423 -8.72030 -8.54404 -7.08283 -5.85116 -3.15484 -0.52656 0.27466 1.29827 2.35263 2.52514 2.86429 3.40312 3.46285 3.48013 3.54681 3.63091 3.96621 3.99066 4.11907 4.43257 4.51582 4.54220 4.74680 4.75945 4.80894 4.95669 5.03238 5.14920 5.23719 5.38590 5.41955 5.43177 5.48860 5.57454 5.70180 5.73724 5.79666 5.87648 5.90015 5.98653 6.05237 6.09973 6.23153 6.29822 6.35346 6.53976 6.70675 6.86979 7.34042 7.65054 7.99117 8.26730 8.32708 9.44837 9.97652 10.32952 11.36935 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.003206 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.729441 B = 8731.129803 C = 9620.307028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.129 4.129 14 C 0.101 3.899 15 N -0.592 5.592 16 C 0.557 3.443 17 O -0.520 6.520 18 C -0.088 4.088 19 C 0.041 3.959 20 N -0.220 5.220 21 N -0.195 5.195 22 C 0.064 3.936 23 C -0.080 4.080 24 C -0.095 4.095 25 C -0.090 4.090 26 C -0.095 4.095 27 C -0.032 4.032 28 C 0.091 3.909 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.178 0.822 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.727 -19.767 0.191 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.022 4.022 15 N -0.324 5.324 16 C 0.342 3.658 17 O -0.396 6.396 18 C -0.104 4.104 19 C -0.111 4.111 20 N -0.072 5.072 21 N -0.050 5.050 22 C -0.065 4.065 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.114 4.114 27 C -0.041 4.041 28 C -0.033 4.033 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.195 0.805 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.112 0.888 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.887 -20.548 0.902 23.756 hybrid contribution 0.185 2.420 -0.338 2.451 sum 12.072 -18.128 0.564 21.787 Atomic orbital electron populations 1.69662 1.05145 1.25871 1.57166 1.24754 0.95517 0.97794 1.02454 0.86192 0.78826 0.83648 0.77573 1.21622 1.21678 1.20575 1.19258 0.91092 0.83932 1.43411 0.91026 1.42373 1.05832 0.99506 1.88020 1.20476 0.95025 0.86575 0.92159 0.93057 1.21841 0.98707 0.93879 1.02070 1.21871 1.01047 0.98466 0.95371 1.21913 0.97044 0.88768 0.94462 1.48274 1.17954 1.11855 1.54351 1.17887 0.81647 0.86955 0.79328 1.90845 1.58551 1.42056 1.48141 1.21303 0.94597 0.95934 0.98599 1.24295 1.01190 0.88943 0.96669 1.73029 1.05205 1.17678 1.11280 1.73595 0.98522 1.28449 1.04443 1.20321 0.96926 0.90342 0.98950 1.20795 0.91108 1.00913 0.97253 1.21104 1.00220 0.92755 0.97442 1.21223 0.95759 0.96612 0.97393 1.21180 0.94018 0.99756 0.96432 1.18641 0.93470 0.94652 0.97383 1.22962 0.97966 0.80721 1.01679 0.93384 0.77982 0.91178 0.91813 0.90683 0.91610 0.90587 0.90718 0.80506 0.83640 0.84360 0.84444 0.83710 0.88799 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.66 9.93 -15.06 -0.15 -6.81 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -17.10 5.13 -53.31 -0.27 -17.38 16 10 C 0.17 3.16 2.92 -67.81 -0.20 2.97 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.13 -1.86 5.35 -26.69 -0.14 -2.01 16 13 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 14 C 0.10 1.11 5.63 -3.71 -0.02 1.09 16 15 N -0.59 -8.47 2.97 -173.87 -0.52 -8.99 16 16 C 0.56 8.50 6.59 -12.32 -0.08 8.41 16 17 O -0.52 -9.78 15.32 5.33 0.08 -9.70 16 18 C -0.09 -1.15 4.66 -104.30 -0.49 -1.64 16 19 C 0.04 0.48 9.11 -16.96 -0.15 0.32 16 20 N -0.22 -2.81 11.47 30.73 0.35 -2.46 16 21 N -0.20 -2.52 11.52 32.21 0.37 -2.14 16 22 C 0.06 0.75 6.69 -84.87 -0.57 0.18 16 23 C -0.08 -0.69 10.01 -39.46 -0.39 -1.08 16 24 C -0.09 -0.67 9.94 -39.92 -0.40 -1.06 16 25 C -0.09 -0.76 9.96 -39.84 -0.40 -1.16 16 26 C -0.10 -1.10 9.30 -39.66 -0.37 -1.46 16 27 C -0.03 -0.41 5.77 -106.50 -0.61 -1.02 16 28 C 0.09 1.59 6.03 -3.71 -0.02 1.57 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 9.72 7.80 -40.82 -0.32 9.40 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.74 5.39 -51.93 -0.28 0.46 16 37 H 0.18 1.62 7.79 -52.49 -0.41 1.21 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.15 1.86 6.63 -52.49 -0.35 1.52 16 42 H 0.09 1.94 7.00 -51.93 -0.36 1.58 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -32.41 355.67 -8.67 -41.08 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.49 Total: 7.41 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -4.25 Total: -3.66 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.66 Total: -57.63 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.41 -8.67 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000297406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.833 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds