Wall clock time and date at job start Tue Mar 31 2020 15:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00705 * 2 1 4 4 H 1.48501 * 109.47142 * 270.00625 * 3 2 1 5 5 H 1.48502 * 109.46808 * 30.00089 * 3 2 1 6 6 H 1.48497 * 109.47186 * 150.00171 * 3 2 1 7 7 C 1.38818 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99702 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49641 * 325.05982 * 10 9 7 12 12 C 1.53037 * 109.49374 * 204.99649 * 10 9 7 13 13 C 1.53046 * 109.53717 * 178.64888 * 12 10 9 14 14 C 1.53195 * 109.33511 * 61.35157 * 13 12 10 15 15 N 1.46932 * 108.77241 * 305.41298 * 14 13 12 16 16 C 1.34772 * 120.60942 * 233.57856 * 15 14 13 17 17 O 1.21540 * 120.00665 * 174.18812 * 16 15 14 18 18 C 1.47871 * 119.99537 * 354.19315 * 16 15 14 19 19 C 1.38952 * 121.42309 * 306.18503 * 18 16 15 20 20 N 1.32585 * 120.33891 * 180.02562 * 19 18 16 21 21 N 1.28371 * 123.43416 * 0.02562 * 20 19 18 22 22 C 1.33461 * 121.85576 * 359.97438 * 21 20 19 23 23 C 1.40587 * 121.73896 * 179.97438 * 22 21 20 24 24 C 1.36111 * 119.61109 * 180.02562 * 23 22 21 25 25 C 1.39379 * 121.13177 * 0.02562 * 24 23 22 26 26 C 1.36342 * 120.88379 * 359.97438 * 25 24 23 27 27 C 1.39861 * 119.50083 * 359.71396 * 26 25 24 28 28 C 1.46929 * 118.76401 * 53.55762 * 15 14 13 29 29 H 0.97010 * 119.99141 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00467 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.45972 * 58.63628 * 12 10 9 32 32 H 1.09002 * 109.46559 * 298.67296 * 12 10 9 33 33 H 1.08993 * 109.49971 * 181.31852 * 13 12 10 34 34 H 1.08999 * 109.49910 * 301.38700 * 13 12 10 35 35 H 1.09001 * 109.58550 * 65.16921 * 14 13 12 36 36 H 1.08997 * 109.58676 * 185.59656 * 14 13 12 37 37 H 1.07999 * 119.83056 * 0.02584 * 19 18 16 38 38 H 1.07997 * 120.19059 * 0.04263 * 23 22 21 39 39 H 1.08002 * 119.43687 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.55724 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.24714 * 179.97438 * 26 25 24 42 42 H 1.09001 * 109.58795 * 186.62760 * 28 15 14 43 43 H 1.08996 * 109.70351 * 66.27137 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2024 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 1 2.9686 -3.5506 -0.5908 12 6 1.1802 -4.7526 -0.6111 13 6 1.9566 -6.0712 -0.6437 14 6 2.3190 -6.4818 0.7870 15 7 3.0380 -5.3731 1.4294 16 6 4.2416 -5.5755 2.0011 17 8 4.8743 -4.6331 2.4356 18 6 4.7924 -6.9442 2.0997 19 6 4.0682 -7.9763 2.6837 20 7 4.5832 -9.1955 2.7612 21 7 5.7487 -9.5005 2.3179 22 6 6.5399 -8.5965 1.7364 23 6 7.8162 -8.9331 1.2523 24 6 8.5873 -7.9764 0.6669 25 6 8.1341 -6.6646 0.5385 26 6 6.9021 -6.3017 0.9962 27 6 6.0807 -7.2610 1.5972 28 6 2.4206 -4.0399 1.4365 29 1 -0.4849 0.8402 0.0004 30 1 0.3553 -2.3880 0.0002 31 1 0.9003 -4.4710 -1.6262 32 1 0.2810 -4.8755 -0.0074 33 1 1.3395 -6.8455 -1.0992 34 1 2.8682 -5.9423 -1.2271 35 1 1.4091 -6.6995 1.3463 36 1 2.9560 -7.3659 0.7631 37 1 3.0806 -7.7843 3.0765 38 1 8.1824 -9.9449 1.3441 39 1 9.5671 -8.2381 0.2956 40 1 8.7670 -5.9258 0.0693 41 1 6.5615 -5.2823 0.8917 42 1 3.1250 -3.3132 1.8415 43 1 1.5192 -4.0555 2.0491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000297406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:01 Heat of formation + Delta-G solvation = 41.357400 kcal Electronic energy + Delta-G solvation = -27370.304904 eV Core-core repulsion = 23608.442232 eV Total energy + Delta-G solvation = -3761.862672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.74252 -41.09889 -39.00167 -38.77685 -36.34133 -35.02358 -33.87232 -32.83789 -32.77631 -31.56049 -30.05816 -27.68184 -26.04231 -25.88241 -25.45626 -23.87099 -23.35708 -21.88907 -20.56642 -19.75412 -19.49611 -19.16174 -18.45287 -17.48697 -16.91248 -16.80580 -16.33038 -16.16043 -16.05431 -15.64457 -15.51397 -15.40094 -15.23748 -15.05264 -14.55000 -14.15549 -14.02397 -13.80136 -13.49827 -13.45466 -13.15696 -12.92350 -12.89911 -12.58040 -12.26104 -12.18189 -12.02535 -11.96524 -11.90742 -11.80844 -11.53772 -11.39137 -11.11905 -10.76464 -10.49536 -9.92276 -9.50629 -9.05888 -8.00152 -5.29460 -1.40363 -0.53597 0.47847 1.26724 1.44122 1.45254 1.53832 1.59971 1.76716 2.51990 2.71996 2.79229 3.00172 3.12224 3.26187 3.33326 3.65194 3.65482 3.76582 3.93530 3.95383 4.05557 4.09737 4.13323 4.25219 4.30409 4.32959 4.44602 4.49918 4.64024 4.72391 4.79711 4.82079 4.84116 4.93118 4.98378 5.06917 5.19319 5.26912 5.30508 5.36832 5.40039 5.49876 5.63202 6.15185 6.22327 6.79131 7.29592 7.36153 8.00870 8.26313 9.22354 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.003206 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.729441 B = 8731.129803 C = 9620.307028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.032 0.968 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.098 3.902 15 N -0.588 5.588 16 C 0.560 3.440 17 O -0.566 6.566 18 C -0.107 4.107 19 C 0.052 3.948 20 N -0.238 5.238 21 N -0.203 5.203 22 C 0.050 3.950 23 C -0.078 4.078 24 C -0.082 4.082 25 C -0.067 4.067 26 C -0.133 4.133 27 C -0.041 4.041 28 C 0.107 3.893 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.200 0.800 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.164 0.836 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.450 -22.359 -0.565 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.158 4.158 14 C -0.023 4.023 15 N -0.319 5.319 16 C 0.347 3.653 17 O -0.445 6.445 18 C -0.122 4.122 19 C -0.100 4.100 20 N -0.089 5.089 21 N -0.057 5.057 22 C -0.080 4.080 23 C -0.099 4.099 24 C -0.102 4.102 25 C -0.087 4.087 26 C -0.152 4.152 27 C -0.050 4.050 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.216 0.784 38 H 0.190 0.810 39 H 0.201 0.799 40 H 0.182 0.818 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.620 -23.215 0.139 26.916 hybrid contribution -0.175 3.135 -0.154 3.143 sum 13.445 -20.080 -0.015 24.166 Atomic orbital electron populations 1.69788 1.06319 1.26192 1.58960 1.25466 0.96354 1.00752 1.03308 0.85249 0.77674 0.79942 0.77569 1.21081 1.21837 1.20148 1.19507 0.91068 0.85399 1.41800 0.91580 1.42491 1.05565 1.00484 1.88237 1.20630 0.94707 0.86124 0.92739 0.95010 1.21738 0.98566 0.93989 1.01284 1.21850 1.00854 0.97351 0.95793 1.22214 0.98028 0.87875 0.94213 1.48221 1.17959 1.11381 1.54359 1.18201 0.81223 0.87558 0.78301 1.90810 1.59772 1.43832 1.50121 1.21037 0.95568 0.94657 1.00979 1.24528 1.01711 0.88107 0.95642 1.73005 1.05604 1.18023 1.12315 1.73500 0.98748 1.29091 1.04400 1.20669 0.98140 0.89654 0.99518 1.21222 0.89735 1.02622 0.96282 1.21566 1.01543 0.91316 0.95794 1.21654 0.94311 0.98067 0.94645 1.21101 0.95919 0.98746 0.99431 1.18829 0.93379 0.95429 0.97390 1.22395 0.97114 0.81963 1.00372 0.93811 0.78875 0.91828 0.90872 0.87055 0.92267 0.88023 0.89010 0.78365 0.81046 0.79945 0.81803 0.86233 0.92615 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.95 13.06 21.65 0.28 -57.67 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.25 -13.73 9.93 84.04 0.83 -12.90 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -35.87 5.13 -322.56 -1.65 -37.52 16 10 C 0.17 6.46 2.92 45.07 0.13 6.60 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.12 -3.36 5.35 30.62 0.16 -3.20 16 13 C -0.12 -2.47 6.08 30.67 0.19 -2.29 16 14 C 0.10 1.96 5.63 86.36 0.49 2.45 16 15 N -0.59 -16.94 2.97 -822.28 -2.44 -19.39 16 16 C 0.56 17.70 6.59 86.79 0.57 18.27 16 17 O -0.57 -22.74 15.32 -3.84 -0.06 -22.80 16 18 C -0.11 -2.78 4.66 -19.66 -0.09 -2.87 16 19 C 0.05 1.16 9.11 84.75 0.77 1.93 16 20 N -0.24 -5.79 11.47 -56.68 -0.65 -6.44 16 21 N -0.20 -4.94 11.52 -51.99 -0.60 -5.54 16 22 C 0.05 1.09 6.69 40.38 0.27 1.36 16 23 C -0.08 -1.08 10.01 22.35 0.22 -0.86 16 24 C -0.08 -0.82 9.94 22.05 0.22 -0.60 16 25 C -0.07 -0.96 9.96 22.10 0.22 -0.74 16 26 C -0.13 -3.05 9.30 22.22 0.21 -2.85 16 27 C -0.04 -1.02 5.77 -21.08 -0.12 -1.14 16 28 C 0.11 3.89 6.03 86.36 0.52 4.41 16 29 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 30 H 0.38 19.61 7.80 -92.71 -0.72 18.89 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.61 5.39 -2.39 -0.01 1.60 16 37 H 0.20 3.29 7.79 -2.91 -0.02 3.27 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.12 3.32 6.63 -2.91 -0.02 3.30 16 42 H 0.06 2.46 7.00 -2.39 -0.02 2.45 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -74.57 355.67 2.29 -72.28 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.33 Total: 24.24 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.06 Total: 4.28 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.06 Total: -126.57 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.57 2.29 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000297406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.639 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds