Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00520 * 2 1 4 4 H 1.48496 * 109.47123 * 270.28027 * 3 2 1 5 5 H 1.48502 * 109.46752 * 30.28060 * 3 2 1 6 6 H 1.48497 * 109.47121 * 150.27395 * 3 2 1 7 7 C 1.38816 * 119.99533 * 180.27979 * 2 1 3 8 8 H 1.07994 * 120.00163 * 359.72502 * 7 2 1 9 9 N 1.36943 * 119.99764 * 179.72112 * 7 2 1 10 10 C 1.46500 * 119.99810 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49606 * 34.93595 * 10 9 7 12 12 C 1.53033 * 109.49541 * 155.00391 * 10 9 7 13 13 C 1.53040 * 109.53761 * 181.31614 * 12 10 9 14 14 C 1.53189 * 109.31393 * 298.63173 * 13 12 10 15 15 N 1.46931 * 108.77198 * 54.63752 * 14 13 12 16 16 C 1.34773 * 120.63265 * 126.41654 * 15 14 13 17 17 O 1.21543 * 120.00015 * 176.00795 * 16 15 14 18 18 C 1.47868 * 119.99742 * 356.00399 * 16 15 14 19 19 C 1.38951 * 121.42589 * 53.27877 * 18 16 15 20 20 N 1.32582 * 120.34587 * 180.02562 * 19 18 16 21 21 N 1.28374 * 123.42795 * 359.96402 * 20 19 18 22 22 C 1.33471 * 121.85647 * 0.02562 * 21 20 19 23 23 C 1.40581 * 121.73589 * 179.97438 * 22 21 20 24 24 C 1.36112 * 119.61128 * 180.02562 * 23 22 21 25 25 C 1.39375 * 121.12709 * 359.97438 * 24 23 22 26 26 C 1.36336 * 120.88762 * 0.02743 * 25 24 23 27 27 C 1.39860 * 119.50000 * 359.71672 * 26 25 24 28 28 C 1.46925 * 118.73718 * 306.38545 * 15 14 13 29 29 H 0.97003 * 119.99393 * 359.72226 * 1 2 3 30 30 H 0.96998 * 120.00186 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.46369 * 301.33210 * 12 10 9 32 32 H 1.08994 * 109.46451 * 61.30653 * 12 10 9 33 33 H 1.09002 * 109.49908 * 58.58708 * 13 12 10 34 34 H 1.09002 * 109.49917 * 178.67837 * 13 12 10 35 35 H 1.09001 * 109.58657 * 174.42058 * 14 13 12 36 36 H 1.08998 * 109.59040 * 294.84635 * 14 13 12 37 37 H 1.08005 * 119.82508 * 359.96366 * 19 18 16 38 38 H 1.08000 * 120.19688 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.43888 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.55612 * 180.02562 * 25 24 23 41 41 H 1.08003 * 120.25322 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.58906 * 293.82885 * 28 15 14 43 43 H 1.09002 * 109.58869 * 173.40019 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4919 2.0497 -1.4000 5 1 1.4508 2.6509 0.7060 6 1 3.5507 1.4383 0.6942 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0059 9 7 3.3796 -1.2023 -0.0116 10 6 4.1120 -2.4710 -0.0173 11 1 3.5619 -3.2060 -0.6049 12 6 5.4971 -2.2584 -0.6323 13 6 6.2507 -3.5899 -0.6687 14 6 6.4312 -4.1092 0.7612 15 7 5.1141 -4.1788 1.4087 16 6 4.6903 -5.3226 1.9819 17 8 3.6310 -5.3478 2.5772 18 6 5.5141 -6.5468 1.8863 19 6 6.8497 -6.5530 2.2695 20 7 7.5687 -7.6629 2.1744 21 7 7.0989 -8.7746 1.7369 22 6 5.8307 -8.8954 1.3388 23 6 5.3190 -10.1139 0.8596 24 6 4.0186 -10.1883 0.4643 25 6 3.1819 -9.0754 0.5264 26 6 3.6435 -7.8775 0.9855 27 6 4.9731 -7.7668 1.4050 28 6 4.2681 -2.9776 1.4201 29 1 -0.4849 0.8401 0.0041 30 1 3.8646 -0.3623 -0.0113 31 1 5.3890 -1.8746 -1.6468 32 1 6.0556 -1.5416 -0.0304 33 1 5.6808 -4.3148 -1.2498 34 1 7.2281 -3.4423 -1.1282 35 1 6.8786 -5.1028 0.7353 36 1 7.0767 -3.4299 1.3179 37 1 7.3048 -5.6487 2.6459 38 1 5.9541 -10.9857 0.8046 39 1 3.6283 -11.1259 0.0970 40 1 2.1541 -9.1631 0.2065 41 1 2.9860 -7.0218 1.0297 42 1 4.7373 -2.2061 2.0305 43 1 3.2884 -3.2245 1.8289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000297408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = 69.227646 kcal Electronic energy + Delta-G solvation = -27446.762178 eV Core-core repulsion = 23686.108050 eV Total energy + Delta-G solvation = -3760.654127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85131 -39.97328 -38.18015 -37.58523 -34.89943 -33.96283 -32.46533 -31.96577 -31.45535 -30.75638 -28.92079 -26.66290 -25.07114 -24.61551 -23.96199 -22.93442 -21.88632 -20.66352 -19.50281 -18.92856 -18.65104 -17.63278 -17.41633 -16.37967 -15.90732 -15.56365 -15.42844 -15.04724 -14.68285 -14.63792 -14.42476 -14.31927 -13.91694 -13.69433 -13.27720 -12.91677 -12.81766 -12.68312 -12.63857 -12.54686 -12.17722 -11.80829 -11.39348 -11.17333 -11.02671 -11.00657 -10.84120 -10.80198 -10.57431 -10.37331 -10.01339 -9.73202 -9.70985 -9.65316 -9.21913 -8.71533 -8.59924 -7.39540 -5.84797 -3.22955 -0.52750 0.27331 1.30645 2.34245 2.50522 2.83416 3.31063 3.33410 3.40048 3.54996 3.62109 3.95634 3.97167 4.10579 4.44308 4.51039 4.53230 4.63939 4.75946 4.81245 4.87725 5.00403 5.08282 5.20886 5.24712 5.33571 5.35367 5.42519 5.58804 5.60231 5.66362 5.74631 5.76413 5.88481 5.89477 5.95912 6.01308 6.11037 6.23546 6.31938 6.42570 6.57507 6.74544 7.28578 7.88759 7.96808 8.25789 8.33550 9.10203 9.81894 9.99774 11.32979 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.003252 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.937359 B = 8607.128459 C = 9425.746666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.095 3.905 15 N -0.592 5.592 16 C 0.557 3.443 17 O -0.517 6.517 18 C -0.089 4.089 19 C 0.038 3.962 20 N -0.221 5.221 21 N -0.195 5.195 22 C 0.064 3.936 23 C -0.080 4.080 24 C -0.094 4.094 25 C -0.089 4.089 26 C -0.095 4.095 27 C -0.030 4.030 28 C 0.092 3.908 29 H 0.261 0.739 30 H 0.363 0.637 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.178 0.822 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.819 -17.605 -0.147 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.028 4.028 15 N -0.325 5.325 16 C 0.343 3.657 17 O -0.393 6.393 18 C -0.105 4.105 19 C -0.114 4.114 20 N -0.073 5.073 21 N -0.049 5.049 22 C -0.065 4.065 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.109 4.109 26 C -0.114 4.114 27 C -0.040 4.040 28 C -0.032 4.032 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.195 0.805 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.391 -18.268 0.393 23.890 hybrid contribution -0.790 2.057 -0.084 2.205 sum 14.601 -16.211 0.309 21.819 Atomic orbital electron populations 1.69704 1.05147 1.25978 1.56739 1.24689 0.95226 0.97257 1.01556 0.86555 0.79209 0.84956 0.77797 1.21001 1.21648 1.20286 1.19077 0.80310 0.94867 1.43915 0.89071 1.42728 1.04165 1.01646 1.89738 1.20455 0.91112 0.89648 0.92540 0.92167 1.21879 0.96617 0.96357 1.02012 1.21864 1.01102 0.98208 0.95597 1.22045 0.84306 1.02066 0.94353 1.48220 1.18505 1.11276 1.54504 1.17869 0.85421 0.82407 0.80051 1.90859 1.22396 1.84382 1.41640 1.21277 0.95399 0.94973 0.98842 1.24301 0.90569 0.99296 0.97246 1.73028 1.30449 0.95109 1.08720 1.73591 1.10587 1.15948 1.04808 1.20314 0.91933 0.94635 0.99635 1.20792 0.95879 0.95719 0.97752 1.21116 0.93289 0.99287 0.97730 1.21241 1.00754 0.92188 0.96683 1.21206 0.93683 0.99689 0.96830 1.18623 0.95724 0.92217 0.97389 1.22876 0.95525 0.83717 1.01106 0.92911 0.80358 0.91071 0.91918 0.91412 0.90581 0.90179 0.90481 0.80494 0.83634 0.84322 0.84344 0.83600 0.91525 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 7 C -0.25 -6.87 10.41 -15.05 -0.16 -7.03 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.74 -16.51 4.93 -53.31 -0.26 -16.77 16 10 C 0.17 3.09 2.92 -67.81 -0.20 2.89 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -1.77 5.35 -26.69 -0.14 -1.91 16 13 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 14 C 0.10 0.99 5.56 -3.71 -0.02 0.97 16 15 N -0.59 -8.24 2.97 -173.87 -0.52 -8.76 16 16 C 0.56 8.41 6.64 -12.32 -0.08 8.33 16 17 O -0.52 -9.70 15.29 5.33 0.08 -9.61 16 18 C -0.09 -1.15 4.96 -104.30 -0.52 -1.67 16 19 C 0.04 0.43 8.74 -16.96 -0.15 0.28 16 20 N -0.22 -2.78 11.47 30.73 0.35 -2.43 16 21 N -0.19 -2.49 11.52 32.21 0.37 -2.12 16 22 C 0.06 0.75 6.69 -84.87 -0.57 0.19 16 23 C -0.08 -0.70 10.01 -39.46 -0.40 -1.10 16 24 C -0.09 -0.68 9.94 -39.92 -0.40 -1.08 16 25 C -0.09 -0.78 9.96 -39.84 -0.40 -1.18 16 26 C -0.10 -1.13 9.29 -39.66 -0.37 -1.50 16 27 C -0.03 -0.39 5.77 -106.50 -0.61 -1.00 16 28 C 0.09 1.56 6.01 -3.71 -0.02 1.54 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.74 4.70 -51.93 -0.24 0.50 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.18 1.52 7.34 -52.48 -0.39 1.14 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.15 1.94 6.61 -52.48 -0.35 1.60 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 2.00 7.03 -51.93 -0.36 1.64 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -33.55 351.28 -8.29 -41.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.39 Total: 7.41 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -4.29 Total: -3.63 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.72 Total: -57.98 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.55 -8.29 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000297408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.071 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds