Wall clock time and date at job start Tue Mar 31 2020 15:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00520 * 2 1 4 4 H 1.48496 * 109.47123 * 270.28027 * 3 2 1 5 5 H 1.48502 * 109.46752 * 30.28060 * 3 2 1 6 6 H 1.48497 * 109.47121 * 150.27395 * 3 2 1 7 7 C 1.38816 * 119.99533 * 180.27979 * 2 1 3 8 8 H 1.07994 * 120.00163 * 359.72502 * 7 2 1 9 9 N 1.36943 * 119.99764 * 179.72112 * 7 2 1 10 10 C 1.46500 * 119.99810 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49606 * 34.93595 * 10 9 7 12 12 C 1.53033 * 109.49541 * 155.00391 * 10 9 7 13 13 C 1.53040 * 109.53761 * 181.31614 * 12 10 9 14 14 C 1.53189 * 109.31393 * 298.63173 * 13 12 10 15 15 N 1.46931 * 108.77198 * 54.63752 * 14 13 12 16 16 C 1.34773 * 120.63265 * 126.41654 * 15 14 13 17 17 O 1.21543 * 120.00015 * 176.00795 * 16 15 14 18 18 C 1.47868 * 119.99742 * 356.00399 * 16 15 14 19 19 C 1.38951 * 121.42589 * 53.27877 * 18 16 15 20 20 N 1.32582 * 120.34587 * 180.02562 * 19 18 16 21 21 N 1.28374 * 123.42795 * 359.96402 * 20 19 18 22 22 C 1.33471 * 121.85647 * 0.02562 * 21 20 19 23 23 C 1.40581 * 121.73589 * 179.97438 * 22 21 20 24 24 C 1.36112 * 119.61128 * 180.02562 * 23 22 21 25 25 C 1.39375 * 121.12709 * 359.97438 * 24 23 22 26 26 C 1.36336 * 120.88762 * 0.02743 * 25 24 23 27 27 C 1.39860 * 119.50000 * 359.71672 * 26 25 24 28 28 C 1.46925 * 118.73718 * 306.38545 * 15 14 13 29 29 H 0.97003 * 119.99393 * 359.72226 * 1 2 3 30 30 H 0.96998 * 120.00186 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.46369 * 301.33210 * 12 10 9 32 32 H 1.08994 * 109.46451 * 61.30653 * 12 10 9 33 33 H 1.09002 * 109.49908 * 58.58708 * 13 12 10 34 34 H 1.09002 * 109.49917 * 178.67837 * 13 12 10 35 35 H 1.09001 * 109.58657 * 174.42058 * 14 13 12 36 36 H 1.08998 * 109.59040 * 294.84635 * 14 13 12 37 37 H 1.08005 * 119.82508 * 359.96366 * 19 18 16 38 38 H 1.08000 * 120.19688 * 359.97438 * 23 22 21 39 39 H 1.08000 * 119.43888 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.55612 * 180.02562 * 25 24 23 41 41 H 1.08003 * 120.25322 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.58906 * 293.82885 * 28 15 14 43 43 H 1.09002 * 109.58869 * 173.40019 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4919 2.0497 -1.4000 5 1 1.4508 2.6509 0.7060 6 1 3.5507 1.4383 0.6942 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0059 9 7 3.3796 -1.2023 -0.0116 10 6 4.1120 -2.4710 -0.0173 11 1 3.5619 -3.2060 -0.6049 12 6 5.4971 -2.2584 -0.6323 13 6 6.2507 -3.5899 -0.6687 14 6 6.4312 -4.1092 0.7612 15 7 5.1141 -4.1788 1.4087 16 6 4.6903 -5.3226 1.9819 17 8 3.6310 -5.3478 2.5772 18 6 5.5141 -6.5468 1.8863 19 6 6.8497 -6.5530 2.2695 20 7 7.5687 -7.6629 2.1744 21 7 7.0989 -8.7746 1.7369 22 6 5.8307 -8.8954 1.3388 23 6 5.3190 -10.1139 0.8596 24 6 4.0186 -10.1883 0.4643 25 6 3.1819 -9.0754 0.5264 26 6 3.6435 -7.8775 0.9855 27 6 4.9731 -7.7668 1.4050 28 6 4.2681 -2.9776 1.4201 29 1 -0.4849 0.8401 0.0041 30 1 3.8646 -0.3623 -0.0113 31 1 5.3890 -1.8746 -1.6468 32 1 6.0556 -1.5416 -0.0304 33 1 5.6808 -4.3148 -1.2498 34 1 7.2281 -3.4423 -1.1282 35 1 6.8786 -5.1028 0.7353 36 1 7.0767 -3.4299 1.3179 37 1 7.3048 -5.6487 2.6459 38 1 5.9541 -10.9857 0.8046 39 1 3.6283 -11.1259 0.0970 40 1 2.1541 -9.1631 0.2065 41 1 2.9860 -7.0218 1.0297 42 1 4.7373 -2.2061 2.0305 43 1 3.2884 -3.2245 1.8289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000297408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:04 Heat of formation + Delta-G solvation = 45.838045 kcal Electronic energy + Delta-G solvation = -27447.776427 eV Core-core repulsion = 23686.108050 eV Total energy + Delta-G solvation = -3761.668377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.76968 -41.12203 -39.04362 -38.82851 -36.46480 -35.04494 -33.95510 -33.01909 -32.79310 -31.65194 -30.44453 -27.72407 -26.08529 -25.70795 -25.42219 -23.89270 -23.23023 -22.00802 -20.64823 -19.80448 -19.62588 -19.51053 -18.42079 -17.49437 -16.95182 -16.78652 -16.43174 -16.19142 -16.09106 -15.69634 -15.59222 -15.42286 -15.16851 -14.89572 -14.63660 -14.30335 -14.07763 -13.95464 -13.55844 -13.47682 -13.37060 -12.99920 -12.91867 -12.59326 -12.22754 -12.09821 -12.02096 -11.98663 -11.91978 -11.85208 -11.54730 -11.41664 -11.14078 -10.76776 -10.50216 -9.98987 -9.51665 -9.32793 -8.05863 -5.42400 -1.41783 -0.55101 0.46571 1.24506 1.36851 1.41988 1.48807 1.58103 1.76929 2.46319 2.70766 2.77814 2.98899 3.10874 3.23771 3.25449 3.46129 3.63438 3.74892 3.89214 3.94196 3.97296 4.04990 4.10722 4.18888 4.28583 4.30286 4.42529 4.48890 4.60162 4.70541 4.78004 4.81109 4.82574 4.90935 4.96506 5.06286 5.17946 5.26017 5.29119 5.32693 5.38075 5.61739 5.72047 6.12912 6.17704 6.78294 7.03192 7.34814 7.75273 7.97212 9.15695 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.003252 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.937359 B = 8607.128459 C = 9425.746666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.239 4.239 8 H 0.046 0.954 9 N -0.742 5.742 10 C 0.170 3.830 11 H 0.031 0.969 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.090 3.910 15 N -0.588 5.588 16 C 0.559 3.441 17 O -0.567 6.567 18 C -0.108 4.108 19 C 0.052 3.948 20 N -0.237 5.237 21 N -0.202 5.202 22 C 0.051 3.949 23 C -0.077 4.077 24 C -0.082 4.082 25 C -0.068 4.068 26 C -0.135 4.135 27 C -0.041 4.041 28 C 0.105 3.895 29 H 0.259 0.741 30 H 0.371 0.629 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.205 0.795 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.530 -18.656 -0.948 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.169 1.169 7 C -0.370 4.370 8 H 0.064 0.936 9 N -0.385 5.385 10 C 0.061 3.939 11 H 0.050 0.950 12 C -0.159 4.159 13 C -0.160 4.160 14 C -0.031 4.031 15 N -0.319 5.319 16 C 0.346 3.654 17 O -0.447 6.447 18 C -0.124 4.124 19 C -0.100 4.100 20 N -0.088 5.088 21 N -0.056 5.056 22 C -0.079 4.079 23 C -0.097 4.097 24 C -0.102 4.102 25 C -0.088 4.088 26 C -0.154 4.154 27 C -0.050 4.050 28 C -0.020 4.020 29 H 0.068 0.932 30 H 0.206 0.794 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.222 0.778 38 H 0.191 0.809 39 H 0.201 0.799 40 H 0.180 0.820 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.209 -19.357 -0.422 27.274 hybrid contribution -2.040 2.143 0.119 2.961 sum 17.169 -17.214 -0.303 24.315 Atomic orbital electron populations 1.69911 1.07450 1.26897 1.59113 1.25602 0.96149 1.01641 1.02037 0.85326 0.78775 0.78855 0.78279 1.20068 1.22517 1.16859 1.18951 0.82673 0.93177 1.42169 0.93556 1.42637 1.02343 1.03661 1.89868 1.20621 0.93219 0.87195 0.92894 0.95038 1.21802 0.93659 0.98686 1.01776 1.21863 1.02377 0.95998 0.95800 1.22403 0.82471 1.03883 0.94302 1.48205 1.19452 1.09925 1.54355 1.18212 0.84895 0.83206 0.79135 1.90825 1.24724 1.85169 1.43951 1.21042 0.95973 0.94062 1.01281 1.24593 0.89611 0.99857 0.95962 1.73004 1.30771 0.95377 1.09694 1.73502 1.11097 1.16295 1.04689 1.20647 0.91471 0.95461 1.00339 1.21229 0.96802 0.95282 0.96425 1.21560 0.92358 1.00139 0.96185 1.21647 1.02082 0.91357 0.93699 1.21094 0.93611 1.00406 1.00285 1.18815 0.96170 0.92611 0.97424 1.22373 0.94237 0.85250 1.00166 0.93236 0.79430 0.91016 0.89895 0.92611 0.86666 0.88653 0.87378 0.77847 0.80880 0.79922 0.82041 0.86565 0.90298 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.62 13.97 21.65 0.30 -63.31 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.96 44.43 27.74 68.60 1.90 46.33 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 7 C -0.24 -13.66 10.41 84.03 0.88 -12.78 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 9 N -0.74 -33.38 4.93 -322.57 -1.59 -34.97 16 10 C 0.17 6.18 2.92 45.07 0.13 6.31 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.12 -3.00 5.35 30.62 0.16 -2.83 16 13 C -0.12 -2.23 6.08 30.67 0.19 -2.04 16 14 C 0.09 1.63 5.56 86.36 0.48 2.11 16 15 N -0.59 -16.47 2.97 -822.29 -2.44 -18.91 16 16 C 0.56 17.76 6.64 86.79 0.58 18.33 16 17 O -0.57 -23.30 15.29 -3.85 -0.06 -23.36 16 18 C -0.11 -2.83 4.96 -19.66 -0.10 -2.93 16 19 C 0.05 1.11 8.74 84.75 0.74 1.85 16 20 N -0.24 -5.62 11.47 -56.68 -0.65 -6.27 16 21 N -0.20 -4.87 11.52 -52.00 -0.60 -5.47 16 22 C 0.05 1.13 6.69 40.37 0.27 1.40 16 23 C -0.08 -1.11 10.01 22.35 0.22 -0.89 16 24 C -0.08 -0.92 9.94 22.05 0.22 -0.70 16 25 C -0.07 -1.10 9.96 22.10 0.22 -0.88 16 26 C -0.13 -3.34 9.29 22.22 0.21 -3.14 16 27 C -0.04 -1.05 5.77 -21.08 -0.12 -1.18 16 28 C 0.10 3.69 6.01 86.36 0.52 4.21 16 29 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 30 H 0.37 15.49 5.66 -92.71 -0.52 14.96 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.51 4.70 -2.39 -0.01 1.50 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.20 3.01 7.34 -2.91 -0.02 2.99 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 40 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.12 3.53 6.61 -2.91 -0.02 3.51 16 42 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 2.28 7.03 -2.39 -0.02 2.27 16 Total: -1.00 -80.69 351.28 2.39 -78.29 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.47 Total: 24.05 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.06 Total: 3.61 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -4.98 Total: -128.94 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Total: -80.69 2.39 -78.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000297408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.133 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds