Wall clock time and date at job start Tue Mar 31 2020 15:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00568 * 2 1 4 4 H 1.48494 * 109.47299 * 180.27540 * 3 2 1 5 5 H 1.48500 * 109.47107 * 300.27815 * 3 2 1 6 6 H 1.48499 * 109.46935 * 60.27426 * 3 2 1 7 7 C 1.38819 * 119.99713 * 180.27891 * 2 1 3 8 8 H 1.07994 * 119.99959 * 179.72860 * 7 2 1 9 9 N 1.36936 * 119.99865 * 359.72107 * 7 2 1 10 10 C 1.46493 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49703 * 34.93601 * 10 9 7 12 12 C 1.53047 * 109.50044 * 155.00034 * 10 9 7 13 13 C 1.53036 * 109.54008 * 181.31865 * 12 10 9 14 14 C 1.53194 * 109.31362 * 298.63594 * 13 12 10 15 15 N 1.46927 * 108.77664 * 54.63292 * 14 13 12 16 16 C 1.34778 * 120.63303 * 126.41240 * 15 14 13 17 17 O 1.21583 * 120.00397 * 175.84551 * 16 15 14 18 18 C 1.47517 * 119.99531 * 355.84557 * 16 15 14 19 19 C 1.38674 * 120.33540 * 54.23734 * 18 16 15 20 20 C 1.38993 * 120.62589 * 179.71589 * 19 18 16 21 21 C 1.36218 * 121.14264 * 0.56350 * 20 19 18 22 22 C 1.40688 * 120.17104 * 359.71601 * 21 20 19 23 23 N 1.33759 * 120.98027 * 180.02562 * 22 21 20 24 24 C 1.31327 * 119.73187 * 179.97438 * 23 22 21 25 25 C 1.39649 * 120.68457 * 359.97438 * 24 23 22 26 26 N 1.31453 * 120.64106 * 0.02562 * 25 24 23 27 27 C 1.33493 * 119.71883 * 359.97438 * 26 25 24 28 28 C 1.46926 * 118.73828 * 306.39489 * 15 14 13 29 29 H 0.97002 * 119.99487 * 359.72093 * 1 2 3 30 30 H 0.97001 * 119.99825 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.45700 * 301.34121 * 12 10 9 32 32 H 1.09002 * 109.45519 * 61.31035 * 12 10 9 33 33 H 1.08995 * 109.49789 * 58.58555 * 13 12 10 34 34 H 1.09001 * 109.49876 * 178.68585 * 13 12 10 35 35 H 1.09002 * 109.58828 * 174.42318 * 14 13 12 36 36 H 1.09002 * 109.58389 * 294.85109 * 14 13 12 37 37 H 1.08000 * 119.68656 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.42798 * 180.28257 * 20 19 18 39 39 H 1.07999 * 119.91167 * 179.69710 * 21 20 19 40 40 H 1.08000 * 119.65880 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.67784 * 180.02562 * 25 24 23 42 42 H 1.08991 * 109.58700 * 293.81686 * 28 15 14 43 43 H 1.09003 * 109.58748 * 173.39244 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2091 6 1 1.8967 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2023 -0.0103 9 7 1.3255 -2.3881 -0.0059 10 6 2.0578 -3.6568 -0.0115 11 1 2.9715 -3.5521 0.5737 12 6 1.1832 -4.7543 0.5992 13 6 1.9594 -6.0730 0.6239 14 6 2.3139 -6.4791 -0.8101 15 7 3.0306 -5.3690 -1.4526 16 6 4.2311 -5.5700 -2.0312 17 8 4.7795 -4.6617 -2.6251 18 6 4.8797 -6.8920 -1.9441 19 6 4.2044 -8.0319 -2.3537 20 6 4.8119 -9.2798 -2.2797 21 6 6.0771 -9.4198 -1.7947 22 6 6.7975 -8.2913 -1.3624 23 7 8.0409 -8.4101 -0.8838 24 6 8.6912 -7.3401 -0.4876 25 6 8.0983 -6.0779 -0.5609 26 7 6.8775 -5.9372 -1.0276 27 6 6.1974 -7.0108 -1.4362 28 6 2.4134 -4.0356 -1.4526 29 1 -0.4849 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0021 31 1 0.9083 -4.4756 1.6164 32 1 0.2810 -4.8753 -0.0006 33 1 2.8742 -5.9458 1.2027 34 1 1.3444 -6.8487 1.0801 35 1 2.9507 -7.3636 -0.7925 36 1 1.4009 -6.6945 -1.3652 37 1 3.1985 -7.9486 -2.7377 38 1 4.2698 -10.1542 -2.6083 39 1 6.5281 -10.3997 -1.7415 40 1 9.6949 -7.4374 -0.1009 41 1 8.6481 -5.2089 -0.2309 42 1 1.5087 -4.0518 -2.0600 43 1 3.1159 -3.3078 -1.8589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000535073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:41 Heat of formation + Delta-G solvation = 56.763477 kcal Electronic energy + Delta-G solvation = -27422.593272 eV Core-core repulsion = 23661.398658 eV Total energy + Delta-G solvation = -3761.194614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75664 -39.90345 -37.67464 -37.13602 -34.95378 -34.45569 -32.37227 -31.32752 -31.16439 -30.85650 -28.19640 -26.00032 -25.28101 -24.53607 -23.94111 -23.01948 -21.88024 -20.34643 -19.33761 -19.04581 -18.11138 -17.15420 -17.06338 -16.65506 -15.76723 -15.41671 -15.33915 -14.97358 -14.70458 -14.36021 -14.30107 -14.10058 -13.83726 -13.42248 -13.36578 -12.71530 -12.49675 -12.46818 -12.37792 -12.17249 -12.05584 -11.88669 -11.82379 -11.31782 -11.02954 -10.84155 -10.65014 -10.57374 -10.15874 -9.89595 -9.81092 -9.65398 -9.29691 -9.24724 -9.05754 -8.81252 -8.32345 -6.98582 -5.77444 -3.07012 -0.22696 0.23987 1.49728 2.37665 2.83621 3.20653 3.45809 3.52269 3.55041 3.70660 3.73619 3.85813 3.98517 4.39271 4.41699 4.59723 4.62715 4.73422 4.89177 4.93819 4.96262 5.09355 5.22097 5.34659 5.45459 5.49596 5.53290 5.60275 5.65009 5.79768 5.82848 5.84294 5.94536 6.04360 6.17604 6.21809 6.26010 6.35723 6.49992 6.74314 6.84242 6.99228 7.02762 7.47334 7.63902 7.74680 8.36912 8.41494 9.52853 10.06515 10.42023 11.44926 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003344 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.995482 B = 8372.269586 C = 9396.237088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.098 3.902 15 N -0.599 5.599 16 C 0.560 3.440 17 O -0.515 6.515 18 C -0.079 4.079 19 C -0.072 4.072 20 C -0.102 4.102 21 C -0.069 4.069 22 C 0.074 3.926 23 N -0.426 5.426 24 C 0.077 3.923 25 C 0.080 3.920 26 N -0.404 5.404 27 C 0.109 3.891 28 C 0.095 3.905 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.869 -23.697 -1.264 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.333 5.333 16 C 0.346 3.654 17 O -0.390 6.390 18 C -0.084 4.084 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.089 4.089 22 C -0.050 4.050 23 N -0.140 5.140 24 C -0.099 4.099 25 C -0.095 4.095 26 N -0.117 5.117 27 C -0.016 4.016 28 C -0.029 4.029 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.081 0.919 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.068 -23.096 -1.665 25.665 hybrid contribution 0.211 0.976 0.032 0.999 sum 11.279 -22.120 -1.633 24.883 Atomic orbital electron populations 1.69673 1.05116 1.25624 1.57657 1.24742 0.95515 0.97737 1.02706 0.86120 0.79015 0.83995 0.77153 1.20399 1.21780 1.21860 1.19333 0.91166 0.83955 1.42751 0.90965 1.42378 1.05797 0.99588 1.88067 1.20489 0.94953 0.86442 0.92387 0.93124 1.21824 0.98669 0.94067 1.01839 1.21875 1.00873 0.98265 0.95817 1.21969 0.96899 0.89511 0.94082 1.48197 1.18590 1.11266 1.55266 1.17879 0.80867 0.86882 0.79763 1.90818 1.63316 1.43128 1.41734 1.19940 0.92685 0.94927 1.00825 1.21546 1.00075 0.91064 0.96568 1.20927 0.94909 0.97683 0.98659 1.20926 0.93872 0.97634 0.96447 1.19502 0.92195 0.93537 0.99779 1.68694 1.05938 1.32166 1.07231 1.24098 1.01002 0.89202 0.95557 1.24230 0.91839 0.98858 0.94622 1.68815 1.07041 1.30537 1.05355 1.19249 0.94262 0.89850 0.98241 1.22812 0.97769 0.81221 1.01105 0.93539 0.78069 0.91402 0.91963 0.91767 0.90992 0.90063 0.91100 0.83844 0.83912 0.83950 0.80630 0.80572 0.91883 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.72 -18.02 5.12 -53.31 -0.27 -18.29 16 10 C 0.17 3.41 2.92 -67.81 -0.20 3.22 16 11 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.13 -1.99 5.35 -26.69 -0.14 -2.14 16 13 C -0.13 -1.60 6.08 -26.61 -0.16 -1.77 16 14 C 0.10 1.16 5.52 -3.71 -0.02 1.14 16 15 N -0.60 -9.63 2.97 -174.00 -0.52 -10.15 16 16 C 0.56 9.77 6.86 -12.48 -0.09 9.69 16 17 O -0.51 -11.23 16.22 5.29 0.09 -11.14 16 18 C -0.08 -1.10 4.92 -104.63 -0.51 -1.61 16 19 C -0.07 -0.69 7.40 -39.14 -0.29 -0.98 16 20 C -0.10 -0.74 9.93 -40.03 -0.40 -1.13 16 21 C -0.07 -0.60 9.97 -39.38 -0.39 -1.00 16 22 C 0.07 0.88 6.59 -84.82 -0.56 0.32 16 23 N -0.43 -4.72 10.46 -10.82 -0.11 -4.84 16 24 C 0.08 0.68 11.21 -17.24 -0.19 0.49 16 25 C 0.08 0.85 11.22 -17.19 -0.19 0.66 16 26 N -0.40 -6.16 9.69 -10.59 -0.10 -6.26 16 27 C 0.11 1.56 6.59 -84.53 -0.56 1.00 16 28 C 0.10 1.85 6.01 -3.71 -0.02 1.82 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.80 4.74 -51.93 -0.25 0.55 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.14 1.07 7.34 -52.49 -0.39 0.68 16 38 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.09 2.09 7.03 -51.93 -0.36 1.73 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -36.63 356.59 -9.33 -45.95 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.51 Total: 6.59 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.97 Total: 2.34 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.28 Total: -67.00 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.63 -9.33 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000535073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.715 kcal (2) G-P(sol) polarization free energy of solvation -36.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds