Wall clock time and date at job start Tue Mar 31 2020 15:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00568 * 2 1 4 4 H 1.48494 * 109.47299 * 180.27540 * 3 2 1 5 5 H 1.48500 * 109.47107 * 300.27815 * 3 2 1 6 6 H 1.48499 * 109.46935 * 60.27426 * 3 2 1 7 7 C 1.38819 * 119.99713 * 180.27891 * 2 1 3 8 8 H 1.07994 * 119.99959 * 179.72860 * 7 2 1 9 9 N 1.36936 * 119.99865 * 359.72107 * 7 2 1 10 10 C 1.46493 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49703 * 34.93601 * 10 9 7 12 12 C 1.53047 * 109.50044 * 155.00034 * 10 9 7 13 13 C 1.53036 * 109.54008 * 181.31865 * 12 10 9 14 14 C 1.53194 * 109.31362 * 298.63594 * 13 12 10 15 15 N 1.46927 * 108.77664 * 54.63292 * 14 13 12 16 16 C 1.34778 * 120.63303 * 126.41240 * 15 14 13 17 17 O 1.21583 * 120.00397 * 175.84551 * 16 15 14 18 18 C 1.47517 * 119.99531 * 355.84557 * 16 15 14 19 19 C 1.38674 * 120.33540 * 54.23734 * 18 16 15 20 20 C 1.38993 * 120.62589 * 179.71589 * 19 18 16 21 21 C 1.36218 * 121.14264 * 0.56350 * 20 19 18 22 22 C 1.40688 * 120.17104 * 359.71601 * 21 20 19 23 23 N 1.33759 * 120.98027 * 180.02562 * 22 21 20 24 24 C 1.31327 * 119.73187 * 179.97438 * 23 22 21 25 25 C 1.39649 * 120.68457 * 359.97438 * 24 23 22 26 26 N 1.31453 * 120.64106 * 0.02562 * 25 24 23 27 27 C 1.33493 * 119.71883 * 359.97438 * 26 25 24 28 28 C 1.46926 * 118.73828 * 306.39489 * 15 14 13 29 29 H 0.97002 * 119.99487 * 359.72093 * 1 2 3 30 30 H 0.97001 * 119.99825 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.45700 * 301.34121 * 12 10 9 32 32 H 1.09002 * 109.45519 * 61.31035 * 12 10 9 33 33 H 1.08995 * 109.49789 * 58.58555 * 13 12 10 34 34 H 1.09001 * 109.49876 * 178.68585 * 13 12 10 35 35 H 1.09002 * 109.58828 * 174.42318 * 14 13 12 36 36 H 1.09002 * 109.58389 * 294.85109 * 14 13 12 37 37 H 1.08000 * 119.68656 * 359.97438 * 19 18 16 38 38 H 1.08003 * 119.42798 * 180.28257 * 20 19 18 39 39 H 1.07999 * 119.91167 * 179.69710 * 21 20 19 40 40 H 1.08000 * 119.65880 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.67784 * 180.02562 * 25 24 23 42 42 H 1.08991 * 109.58700 * 293.81686 * 28 15 14 43 43 H 1.09003 * 109.58748 * 173.39244 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0067 5 1 1.8866 2.3993 -1.2091 6 1 1.8967 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2023 -0.0103 9 7 1.3255 -2.3881 -0.0059 10 6 2.0578 -3.6568 -0.0115 11 1 2.9715 -3.5521 0.5737 12 6 1.1832 -4.7543 0.5992 13 6 1.9594 -6.0730 0.6239 14 6 2.3139 -6.4791 -0.8101 15 7 3.0306 -5.3690 -1.4526 16 6 4.2311 -5.5700 -2.0312 17 8 4.7795 -4.6617 -2.6251 18 6 4.8797 -6.8920 -1.9441 19 6 4.2044 -8.0319 -2.3537 20 6 4.8119 -9.2798 -2.2797 21 6 6.0771 -9.4198 -1.7947 22 6 6.7975 -8.2913 -1.3624 23 7 8.0409 -8.4101 -0.8838 24 6 8.6912 -7.3401 -0.4876 25 6 8.0983 -6.0779 -0.5609 26 7 6.8775 -5.9372 -1.0276 27 6 6.1974 -7.0108 -1.4362 28 6 2.4134 -4.0356 -1.4526 29 1 -0.4849 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0021 31 1 0.9083 -4.4756 1.6164 32 1 0.2810 -4.8753 -0.0006 33 1 2.8742 -5.9458 1.2027 34 1 1.3444 -6.8487 1.0801 35 1 2.9507 -7.3636 -0.7925 36 1 1.4009 -6.6945 -1.3652 37 1 3.1985 -7.9486 -2.7377 38 1 4.2698 -10.1542 -2.6083 39 1 6.5281 -10.3997 -1.7415 40 1 9.6949 -7.4374 -0.1009 41 1 8.6481 -5.2089 -0.2309 42 1 1.5087 -4.0518 -2.0600 43 1 3.1159 -3.3078 -1.8589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000535073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:40 Heat of formation + Delta-G solvation = 29.651761 kcal Electronic energy + Delta-G solvation = -27423.768925 eV Core-core repulsion = 23661.398658 eV Total energy + Delta-G solvation = -3762.370267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58698 -41.13693 -38.80767 -38.25629 -36.24348 -35.78984 -33.99855 -32.78939 -31.98187 -31.90569 -29.88546 -27.05568 -26.29966 -25.93141 -25.21477 -24.08450 -23.30639 -21.70511 -20.40892 -19.94556 -19.21444 -18.99885 -18.02853 -17.80062 -16.91561 -16.84717 -16.25604 -16.04645 -15.93925 -15.64061 -15.47231 -15.37942 -15.12587 -14.86191 -14.73069 -14.09616 -13.89292 -13.74035 -13.29682 -13.15450 -12.95090 -12.89683 -12.83593 -12.77015 -12.68405 -12.53697 -12.20185 -12.03163 -11.94453 -11.71729 -11.39309 -11.20139 -11.04621 -10.11371 -10.02840 -9.82692 -9.60089 -9.04950 -8.01800 -5.30999 -1.00232 -0.50704 0.63845 1.41258 1.42948 1.52175 1.53763 1.73200 2.02465 2.50845 2.92394 3.02868 3.12138 3.14215 3.31150 3.49483 3.69960 3.76944 3.90645 3.95250 4.01393 4.09459 4.16336 4.25852 4.28948 4.33304 4.35811 4.53930 4.55473 4.71136 4.80052 4.83564 4.85852 4.98600 5.00850 5.08425 5.13968 5.20001 5.34773 5.40007 5.41637 5.53427 5.61220 6.21075 6.21752 6.37439 6.69440 7.08402 7.28073 7.98954 8.25884 9.20906 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003344 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.995482 B = 8372.269586 C = 9396.237088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.061 0.939 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.022 0.978 12 C -0.116 4.116 13 C -0.121 4.121 14 C 0.094 3.906 15 N -0.598 5.598 16 C 0.557 3.443 17 O -0.578 6.578 18 C -0.121 4.121 19 C -0.049 4.049 20 C -0.087 4.087 21 C -0.062 4.062 22 C 0.056 3.944 23 N -0.436 5.436 24 C 0.085 3.915 25 C 0.076 3.924 26 N -0.468 5.468 27 C 0.082 3.918 28 C 0.110 3.890 29 H 0.254 0.746 30 H 0.379 0.621 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.169 0.831 38 H 0.193 0.807 39 H 0.171 0.829 40 H 0.221 0.779 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 -27.807 -1.051 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.079 0.921 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.041 0.959 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.027 4.027 15 N -0.330 5.330 16 C 0.346 3.654 17 O -0.457 6.457 18 C -0.125 4.125 19 C -0.069 4.069 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.067 4.067 23 N -0.150 5.150 24 C -0.090 4.090 25 C -0.099 4.099 26 N -0.182 5.182 27 C -0.042 4.042 28 C -0.015 4.015 29 H 0.063 0.937 30 H 0.212 0.788 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.186 0.814 38 H 0.211 0.789 39 H 0.188 0.812 40 H 0.237 0.763 41 H 0.216 0.784 42 H 0.085 0.915 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.230 -27.286 -1.435 29.542 hybrid contribution 0.260 2.152 -0.022 2.168 sum 11.490 -25.134 -1.457 27.675 Atomic orbital electron populations 1.69790 1.06217 1.26170 1.58973 1.25461 0.96419 1.00683 1.03218 0.85174 0.77916 0.80179 0.77120 1.20096 1.21631 1.21175 1.19514 0.90894 0.85584 1.41870 0.92134 1.42476 1.05541 1.00471 1.88291 1.20617 0.94442 0.86315 0.92763 0.95946 1.21731 0.98560 0.94137 1.01040 1.21866 1.00398 0.97204 0.96482 1.22360 0.98152 0.88646 0.93529 1.48220 1.18712 1.10832 1.55260 1.18555 0.80481 0.87988 0.78377 1.90761 1.64754 1.45713 1.44498 1.19725 0.93466 0.93963 1.05381 1.21943 1.00702 0.90500 0.93746 1.21412 0.94345 0.98015 0.96823 1.21386 0.94187 0.97688 0.94850 1.19877 0.92821 0.93547 1.00464 1.68788 1.05815 1.32732 1.07698 1.24730 1.02265 0.87916 0.94138 1.24776 0.90909 1.00790 0.93417 1.68748 1.09301 1.32385 1.07803 1.19500 0.94648 0.90731 0.99314 1.22229 0.96687 0.82683 0.99905 0.93718 0.78798 0.92035 0.90696 0.93192 0.86626 0.87329 0.88088 0.81389 0.78947 0.81162 0.76250 0.78375 0.91521 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.50 13.06 21.65 0.28 -59.22 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 48.46 29.55 68.60 2.03 50.48 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.59 9.93 84.04 0.83 -13.76 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -38.19 5.12 -322.57 -1.65 -39.84 16 10 C 0.17 7.15 2.92 45.07 0.13 7.28 16 11 H 0.02 1.07 8.08 -2.39 -0.02 1.05 16 12 C -0.12 -3.62 5.35 30.62 0.16 -3.45 16 13 C -0.12 -2.71 6.08 30.67 0.19 -2.52 16 14 C 0.09 1.96 5.52 86.36 0.48 2.44 16 15 N -0.60 -19.54 2.97 -822.69 -2.45 -21.99 16 16 C 0.56 20.37 6.86 86.69 0.59 20.97 16 17 O -0.58 -27.45 16.22 -3.98 -0.06 -27.51 16 18 C -0.12 -3.32 4.92 -19.87 -0.10 -3.41 16 19 C -0.05 -0.77 7.40 22.56 0.17 -0.60 16 20 C -0.09 -0.82 9.93 21.98 0.22 -0.60 16 21 C -0.06 -0.84 9.97 22.40 0.22 -0.62 16 22 C 0.06 1.25 6.59 40.28 0.27 1.52 16 23 N -0.44 -8.89 10.46 -188.16 -1.97 -10.85 16 24 C 0.08 1.39 11.21 85.11 0.95 2.34 16 25 C 0.08 1.66 11.22 85.09 0.95 2.61 16 26 N -0.47 -15.08 9.69 -187.42 -1.82 -16.90 16 27 C 0.08 2.38 6.59 40.58 0.27 2.65 16 28 C 0.11 4.54 6.01 86.36 0.52 5.06 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.38 20.59 7.80 -92.71 -0.72 19.86 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.73 4.74 -2.39 -0.01 1.72 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.17 1.74 7.34 -2.91 -0.02 1.72 16 38 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 42 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.04 2.21 7.03 -2.39 -0.02 2.19 16 Total: -1.00 -88.74 356.59 1.01 -87.73 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.32 Total: 21.60 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.33 Total: 16.50 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -7.60 Total: -148.80 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.48 kcal Total: -88.74 1.01 -87.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000535073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.377 kcal (2) G-P(sol) polarization free energy of solvation -88.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds