Wall clock time and date at job start Tue Mar 31 2020 14:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99655 * 2 1 4 4 H 1.48509 * 109.46906 * 180.27325 * 3 2 1 5 5 H 1.48500 * 109.47086 * 300.26841 * 3 2 1 6 6 H 1.48502 * 109.47450 * 60.27369 * 3 2 1 7 7 C 1.38812 * 120.00054 * 180.26955 * 2 1 3 8 8 H 1.07995 * 119.99917 * 179.72624 * 7 2 1 9 9 N 1.36936 * 119.99800 * 359.72730 * 7 2 1 10 10 C 1.46504 * 119.99879 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49411 * 34.93868 * 10 9 7 12 12 C 1.53045 * 109.49752 * 155.00035 * 10 9 7 13 13 C 1.53041 * 109.53455 * 181.31951 * 12 10 9 14 14 C 1.53188 * 109.31284 * 298.63275 * 13 12 10 15 15 N 1.46924 * 108.77495 * 54.64169 * 14 13 12 16 16 C 1.34777 * 120.63607 * 126.40997 * 15 14 13 17 17 O 1.21550 * 120.00330 * 175.68152 * 16 15 14 18 18 C 1.47868 * 119.99491 * 355.68751 * 16 15 14 19 19 C 1.40618 * 119.75820 * 50.66656 * 18 16 15 20 20 C 1.35728 * 120.83638 * 179.73150 * 19 18 16 21 21 C 1.40713 * 120.07952 * 0.51586 * 20 19 18 22 22 N 1.33802 * 120.85599 * 179.74831 * 21 20 19 23 23 C 1.31330 * 119.76035 * 180.02562 * 22 21 20 24 24 C 1.39753 * 120.70997 * 359.97438 * 23 22 21 25 25 N 1.31278 * 120.67842 * 359.97438 * 24 23 22 26 26 C 1.33823 * 119.73260 * 0.02562 * 25 24 23 27 27 C 1.38410 * 119.75091 * 230.93980 * 18 16 15 28 28 C 1.46929 * 118.73639 * 306.38976 * 15 14 13 29 29 H 0.96991 * 119.99845 * 359.72471 * 1 2 3 30 30 H 0.96996 * 120.00269 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45611 * 301.34148 * 12 10 9 32 32 H 1.08998 * 109.45771 * 61.30939 * 12 10 9 33 33 H 1.08996 * 109.49715 * 58.58858 * 13 12 10 34 34 H 1.09006 * 109.48978 * 178.68498 * 13 12 10 35 35 H 1.09004 * 109.58589 * 174.42719 * 14 13 12 36 36 H 1.09002 * 109.58734 * 294.70886 * 14 13 12 37 37 H 1.07999 * 119.58207 * 359.97438 * 19 18 16 38 38 H 1.08005 * 119.96150 * 180.30005 * 20 19 18 39 39 H 1.08000 * 119.64463 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.66163 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.25532 * 0.02562 * 27 18 16 42 42 H 1.09005 * 109.58382 * 293.81750 * 28 15 14 43 43 H 1.09003 * 109.58304 * 173.40218 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0067 5 1 1.8865 2.3993 -1.2092 6 1 1.8965 2.3936 1.2158 7 6 2.0104 -1.2021 -0.0057 8 1 3.0903 -1.2021 -0.0101 9 7 1.3257 -2.3880 -0.0056 10 6 2.0582 -3.6568 -0.0121 11 1 2.9722 -3.5521 0.5725 12 6 1.1840 -4.7545 0.5987 13 6 1.9604 -6.0731 0.6224 14 6 2.3140 -6.4787 -0.8118 15 7 3.0301 -5.3683 -1.4544 16 6 4.2303 -5.5690 -2.0339 17 8 4.7767 -4.6616 -2.6301 18 6 4.8822 -6.8932 -1.9445 19 6 4.1616 -8.0506 -2.2889 20 6 4.7401 -9.2765 -2.2201 21 6 6.0737 -9.4039 -1.7898 22 7 6.6577 -10.6052 -1.7113 23 6 7.9035 -10.6992 -1.3064 24 6 8.6283 -9.5568 -0.9562 25 7 8.0779 -8.3670 -1.0257 26 6 6.8098 -8.2452 -1.4354 27 6 6.1954 -6.9848 -1.5170 28 6 2.4129 -4.0350 -1.4535 29 1 -0.4849 0.8400 0.0040 30 1 0.3557 -2.3880 -0.0020 31 1 0.9098 -4.4761 1.6163 32 1 0.2815 -4.8753 -0.0004 33 1 2.8756 -5.9460 1.2007 34 1 1.3457 -6.8489 1.0789 35 1 2.9508 -7.3632 -0.7950 36 1 1.4007 -6.6965 -1.3657 37 1 3.1361 -7.9625 -2.6161 38 1 4.1750 -10.1556 -2.4927 39 1 8.3732 -11.6697 -1.2442 40 1 9.6520 -9.6537 -0.6258 41 1 6.7437 -6.0939 -1.2487 42 1 1.5076 -4.0511 -2.0605 43 1 3.1150 -3.3071 -1.8602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000865460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:31 Heat of formation + Delta-G solvation = 55.307111 kcal Electronic energy + Delta-G solvation = -26882.090900 eV Core-core repulsion = 23120.833133 eV Total energy + Delta-G solvation = -3761.257767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79754 -40.21819 -37.76023 -37.07235 -35.16175 -34.53443 -32.44113 -31.47984 -31.04137 -30.99310 -28.36414 -26.37591 -25.29540 -24.39736 -23.98784 -22.68879 -21.95104 -20.95735 -19.58339 -18.94943 -18.07719 -17.41585 -17.11450 -16.53702 -15.92946 -15.49785 -15.21199 -15.06334 -14.79959 -14.53814 -14.20278 -14.14116 -13.96164 -13.56846 -13.41770 -12.87191 -12.72568 -12.53087 -12.45185 -12.18148 -12.10968 -12.04549 -11.99394 -11.35948 -11.06464 -10.87247 -10.69131 -10.62848 -10.19840 -9.94718 -9.86186 -9.68247 -9.50901 -9.27057 -9.12055 -8.95810 -8.42900 -7.03009 -5.80959 -3.10987 -0.24435 0.06438 1.50345 2.14073 2.75513 3.08676 3.43488 3.50152 3.52356 3.61058 3.62993 3.74650 3.85989 4.23926 4.41815 4.51948 4.56363 4.63816 4.78489 4.87669 4.98017 5.03734 5.18069 5.30456 5.44537 5.47733 5.48679 5.57273 5.59830 5.74190 5.76112 5.85609 5.89023 5.98475 6.12253 6.15517 6.19176 6.30567 6.43445 6.64931 6.77858 6.84595 6.95095 7.30798 7.50839 7.70295 8.19302 8.37181 9.49186 10.02454 10.37691 11.41254 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.002699 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.403337 B =10372.571342 C =11038.517309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.595 5.595 16 C 0.552 3.448 17 O -0.527 6.527 18 C -0.096 4.096 19 C -0.074 4.074 20 C -0.086 4.086 21 C 0.088 3.912 22 N -0.427 5.427 23 C 0.080 3.920 24 C 0.074 3.926 25 N -0.418 5.418 26 C 0.076 3.924 27 C -0.029 4.029 28 C 0.092 3.908 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.065 0.935 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -25.644 -1.481 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.338 3.662 17 O -0.404 6.404 18 C -0.101 4.101 19 C -0.095 4.095 20 C -0.106 4.106 21 C -0.036 4.036 22 N -0.141 5.141 23 C -0.096 4.096 24 C -0.102 4.102 25 N -0.131 5.131 26 C -0.048 4.048 27 C -0.050 4.050 28 C -0.032 4.032 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.193 0.807 40 H 0.194 0.806 41 H 0.167 0.833 42 H 0.083 0.917 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.847 -24.815 -1.836 27.144 hybrid contribution 0.189 0.821 -0.001 0.842 sum 11.035 -23.994 -1.837 26.474 Atomic orbital electron populations 1.69671 1.05123 1.25699 1.57464 1.24755 0.95528 0.97790 1.02599 0.86119 0.78989 0.83955 0.77182 1.20394 1.21761 1.21828 1.19313 0.91137 0.83937 1.42997 0.90969 1.42383 1.05828 0.99564 1.88023 1.20492 0.95033 0.86520 0.92256 0.93068 1.21835 0.98697 0.94024 1.01927 1.21886 1.01011 0.98301 0.95691 1.22062 0.97054 0.89370 0.94164 1.48230 1.18494 1.11428 1.54673 1.18197 0.81252 0.87025 0.79683 1.90837 1.63953 1.43579 1.42009 1.20089 0.94544 0.94332 1.01133 1.21121 1.00381 0.90873 0.97098 1.20669 0.92244 0.98372 0.99293 1.19643 0.95845 0.89282 0.98859 1.68722 1.10586 1.24690 1.10080 1.24134 0.90769 1.00732 0.93960 1.24113 1.01648 0.88456 0.96004 1.68696 1.09152 1.26240 1.09058 1.19415 0.91313 0.94309 0.99773 1.21109 0.92662 0.96254 0.94926 1.22891 0.97948 0.81061 1.01312 0.93488 0.78028 0.91313 0.91935 0.91570 0.90883 0.89683 0.90937 0.83766 0.83608 0.80678 0.80634 0.83276 0.91688 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -17.53 5.12 -53.31 -0.27 -17.81 16 10 C 0.17 3.25 2.92 -67.81 -0.20 3.06 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.91 5.36 -26.69 -0.14 -2.05 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.10 1.04 5.35 -3.71 -0.02 1.02 16 15 N -0.60 -8.82 2.97 -173.87 -0.52 -9.33 16 16 C 0.55 8.71 7.21 -12.32 -0.09 8.62 16 17 O -0.53 -10.55 16.47 5.32 0.09 -10.46 16 18 C -0.10 -1.19 5.01 -105.00 -0.53 -1.71 16 19 C -0.07 -0.70 7.24 -39.58 -0.29 -0.99 16 20 C -0.09 -0.78 9.95 -39.55 -0.39 -1.17 16 21 C 0.09 0.94 6.59 -84.72 -0.56 0.38 16 22 N -0.43 -4.14 10.46 -10.74 -0.11 -4.25 16 23 C 0.08 0.54 11.21 -17.20 -0.19 0.34 16 24 C 0.07 0.53 11.21 -17.22 -0.19 0.34 16 25 N -0.42 -4.62 10.46 -10.81 -0.11 -4.74 16 26 C 0.08 0.90 6.58 -84.81 -0.56 0.34 16 27 C -0.03 -0.37 9.69 -38.69 -0.37 -0.75 16 28 C 0.09 1.69 6.00 -3.71 -0.02 1.67 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.39 9.90 7.80 -40.82 -0.32 9.59 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.76 4.50 -51.93 -0.23 0.53 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.14 1.06 7.01 -52.49 -0.37 0.69 16 38 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.18 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 2.00 7.03 -51.93 -0.36 1.63 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -34.66 356.90 -9.29 -43.95 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.48 Total: 6.60 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.96 Total: 0.18 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.29 Total: -63.23 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.66 -9.29 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000865460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.257 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds