Wall clock time and date at job start Tue Mar 31 2020 14:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99655 * 2 1 4 4 H 1.48509 * 109.46906 * 180.27325 * 3 2 1 5 5 H 1.48500 * 109.47086 * 300.26841 * 3 2 1 6 6 H 1.48502 * 109.47450 * 60.27369 * 3 2 1 7 7 C 1.38812 * 120.00054 * 180.26955 * 2 1 3 8 8 H 1.07995 * 119.99917 * 179.72624 * 7 2 1 9 9 N 1.36936 * 119.99800 * 359.72730 * 7 2 1 10 10 C 1.46504 * 119.99879 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49411 * 34.93868 * 10 9 7 12 12 C 1.53045 * 109.49752 * 155.00035 * 10 9 7 13 13 C 1.53041 * 109.53455 * 181.31951 * 12 10 9 14 14 C 1.53188 * 109.31284 * 298.63275 * 13 12 10 15 15 N 1.46924 * 108.77495 * 54.64169 * 14 13 12 16 16 C 1.34777 * 120.63607 * 126.40997 * 15 14 13 17 17 O 1.21550 * 120.00330 * 175.68152 * 16 15 14 18 18 C 1.47868 * 119.99491 * 355.68751 * 16 15 14 19 19 C 1.40618 * 119.75820 * 50.66656 * 18 16 15 20 20 C 1.35728 * 120.83638 * 179.73150 * 19 18 16 21 21 C 1.40713 * 120.07952 * 0.51586 * 20 19 18 22 22 N 1.33802 * 120.85599 * 179.74831 * 21 20 19 23 23 C 1.31330 * 119.76035 * 180.02562 * 22 21 20 24 24 C 1.39753 * 120.70997 * 359.97438 * 23 22 21 25 25 N 1.31278 * 120.67842 * 359.97438 * 24 23 22 26 26 C 1.33823 * 119.73260 * 0.02562 * 25 24 23 27 27 C 1.38410 * 119.75091 * 230.93980 * 18 16 15 28 28 C 1.46929 * 118.73639 * 306.38976 * 15 14 13 29 29 H 0.96991 * 119.99845 * 359.72471 * 1 2 3 30 30 H 0.96996 * 120.00269 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.45611 * 301.34148 * 12 10 9 32 32 H 1.08998 * 109.45771 * 61.30939 * 12 10 9 33 33 H 1.08996 * 109.49715 * 58.58858 * 13 12 10 34 34 H 1.09006 * 109.48978 * 178.68498 * 13 12 10 35 35 H 1.09004 * 109.58589 * 174.42719 * 14 13 12 36 36 H 1.09002 * 109.58734 * 294.70886 * 14 13 12 37 37 H 1.07999 * 119.58207 * 359.97438 * 19 18 16 38 38 H 1.08005 * 119.96150 * 180.30005 * 20 19 18 39 39 H 1.08000 * 119.64463 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.66163 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.25532 * 0.02562 * 27 18 16 42 42 H 1.09005 * 109.58382 * 293.81750 * 28 15 14 43 43 H 1.09003 * 109.58304 * 173.40218 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0067 5 1 1.8865 2.3993 -1.2092 6 1 1.8965 2.3936 1.2158 7 6 2.0104 -1.2021 -0.0057 8 1 3.0903 -1.2021 -0.0101 9 7 1.3257 -2.3880 -0.0056 10 6 2.0582 -3.6568 -0.0121 11 1 2.9722 -3.5521 0.5725 12 6 1.1840 -4.7545 0.5987 13 6 1.9604 -6.0731 0.6224 14 6 2.3140 -6.4787 -0.8118 15 7 3.0301 -5.3683 -1.4544 16 6 4.2303 -5.5690 -2.0339 17 8 4.7767 -4.6616 -2.6301 18 6 4.8822 -6.8932 -1.9445 19 6 4.1616 -8.0506 -2.2889 20 6 4.7401 -9.2765 -2.2201 21 6 6.0737 -9.4039 -1.7898 22 7 6.6577 -10.6052 -1.7113 23 6 7.9035 -10.6992 -1.3064 24 6 8.6283 -9.5568 -0.9562 25 7 8.0779 -8.3670 -1.0257 26 6 6.8098 -8.2452 -1.4354 27 6 6.1954 -6.9848 -1.5170 28 6 2.4129 -4.0350 -1.4535 29 1 -0.4849 0.8400 0.0040 30 1 0.3557 -2.3880 -0.0020 31 1 0.9098 -4.4761 1.6163 32 1 0.2815 -4.8753 -0.0004 33 1 2.8756 -5.9460 1.2007 34 1 1.3457 -6.8489 1.0789 35 1 2.9508 -7.3632 -0.7950 36 1 1.4007 -6.6965 -1.3657 37 1 3.1361 -7.9625 -2.6161 38 1 4.1750 -10.1556 -2.4927 39 1 8.3732 -11.6697 -1.2442 40 1 9.6520 -9.6537 -0.6258 41 1 6.7437 -6.0939 -1.2487 42 1 1.5076 -4.0511 -2.0605 43 1 3.1150 -3.3071 -1.8602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000865460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:31 Heat of formation + Delta-G solvation = 30.453976 kcal Electronic energy + Delta-G solvation = -26883.168613 eV Core-core repulsion = 23120.833133 eV Total energy + Delta-G solvation = -3762.335480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53487 -41.37876 -38.94561 -38.12493 -36.25330 -35.85442 -34.01020 -32.79298 -32.14197 -31.77602 -29.98905 -27.40822 -26.19895 -25.82008 -25.26943 -23.56816 -23.24688 -22.17012 -20.80495 -19.80450 -19.20465 -18.93250 -18.20651 -17.52848 -17.06094 -16.84762 -16.27189 -16.04871 -15.89705 -15.61433 -15.47952 -15.33056 -15.20722 -14.87299 -14.72828 -14.11867 -13.96733 -13.77268 -13.60100 -13.22155 -12.96411 -12.91328 -12.84720 -12.81912 -12.73341 -12.52009 -12.19100 -12.00637 -11.92436 -11.71653 -11.37451 -11.20443 -11.03896 -10.17391 -10.04252 -9.85979 -9.70448 -9.04762 -8.00877 -5.29954 -0.98133 -0.62975 0.73414 1.28206 1.42514 1.44028 1.53732 1.65360 1.98110 2.51432 2.89107 2.96681 3.08866 3.17481 3.30693 3.33362 3.70810 3.74091 3.86346 3.95025 3.98070 4.03952 4.13534 4.20786 4.29583 4.36146 4.42776 4.57718 4.61964 4.68789 4.72833 4.83025 4.87108 4.87652 5.00988 5.03355 5.11959 5.16843 5.35710 5.40513 5.43005 5.49407 5.53496 6.19925 6.22152 6.30055 6.66245 6.94967 7.29070 8.00685 8.26329 9.21817 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.002699 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.403337 B =10372.571342 C =11038.517309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.244 4.244 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.091 3.909 15 N -0.592 5.592 16 C 0.550 3.450 17 O -0.583 6.583 18 C -0.101 4.101 19 C -0.074 4.074 20 C -0.071 4.071 21 C 0.074 3.926 22 N -0.444 5.444 23 C 0.096 3.904 24 C 0.086 3.914 25 N -0.458 5.458 26 C 0.055 3.945 27 C -0.046 4.046 28 C 0.107 3.893 29 H 0.253 0.747 30 H 0.379 0.621 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.224 0.776 40 H 0.217 0.783 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 -29.933 -1.169 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.376 4.376 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.047 0.953 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.030 4.030 15 N -0.323 5.323 16 C 0.338 3.662 17 O -0.464 6.464 18 C -0.106 4.106 19 C -0.094 4.094 20 C -0.090 4.090 21 C -0.049 4.049 22 N -0.158 5.158 23 C -0.081 4.081 24 C -0.091 4.091 25 N -0.172 5.172 26 C -0.067 4.067 27 C -0.067 4.067 28 C -0.019 4.019 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.193 0.807 39 H 0.240 0.760 40 H 0.234 0.766 41 H 0.144 0.856 42 H 0.086 0.914 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.409 -29.154 -1.512 31.343 hybrid contribution 0.231 1.945 -0.056 1.960 sum 11.640 -27.209 -1.568 29.635 Atomic orbital electron populations 1.69790 1.06240 1.26124 1.59076 1.25468 0.96405 1.00733 1.03378 0.85181 0.78006 0.80253 0.76984 1.19914 1.21800 1.21400 1.19528 0.90994 0.85488 1.41616 0.91808 1.42500 1.05576 1.00523 1.88222 1.20652 0.94700 0.86206 0.92741 0.95273 1.21743 0.98583 0.94212 1.01063 1.21882 1.00740 0.97095 0.96350 1.22458 0.98316 0.88541 0.93653 1.48226 1.18486 1.11009 1.54558 1.18773 0.80968 0.87881 0.78551 1.90798 1.65295 1.45798 1.44531 1.19784 0.94557 0.93300 1.02956 1.21250 1.01269 0.89724 0.97130 1.20978 0.91647 0.98950 0.97420 1.19887 0.96628 0.89306 0.99041 1.68827 1.12012 1.23786 1.11204 1.24978 0.89710 1.02500 0.90897 1.24927 1.03148 0.87431 0.93599 1.68690 1.09271 1.28529 1.10728 1.19393 0.92106 0.94176 1.01009 1.20992 0.92977 0.96393 0.96306 1.22320 0.96970 0.82494 1.00067 0.93788 0.78855 0.92022 0.90910 0.92436 0.86828 0.86970 0.88127 0.81209 0.80668 0.75968 0.76610 0.85569 0.91434 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.89 13.06 21.65 0.28 -58.60 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.24 -14.05 9.93 84.03 0.83 -13.21 16 8 H 0.06 3.70 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -36.98 5.12 -322.57 -1.65 -38.63 16 10 C 0.17 6.68 2.92 45.07 0.13 6.81 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.45 5.36 30.62 0.16 -3.29 16 13 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 14 C 0.09 1.73 5.35 86.36 0.46 2.19 16 15 N -0.59 -17.65 2.97 -822.29 -2.44 -20.09 16 16 C 0.55 18.14 7.21 86.79 0.63 18.76 16 17 O -0.58 -25.31 16.47 -3.87 -0.06 -25.37 16 18 C -0.10 -2.52 5.01 -20.11 -0.10 -2.63 16 19 C -0.07 -1.22 7.24 22.27 0.16 -1.06 16 20 C -0.07 -1.06 9.95 22.29 0.22 -0.84 16 21 C 0.07 1.43 6.59 40.32 0.27 1.70 16 22 N -0.44 -7.10 10.46 -187.88 -1.96 -9.07 16 23 C 0.10 0.88 11.21 85.13 0.95 1.84 16 24 C 0.09 0.97 11.21 85.14 0.95 1.92 16 25 N -0.46 -9.75 10.46 -188.11 -1.97 -11.72 16 26 C 0.06 1.29 6.58 40.25 0.27 1.56 16 27 C -0.05 -1.23 9.69 22.85 0.22 -1.01 16 28 C 0.11 4.11 6.00 86.36 0.52 4.63 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.38 20.08 7.80 -92.71 -0.72 19.35 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.11 1.62 4.50 -2.38 -0.01 1.61 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.17 1.87 7.01 -2.91 -0.02 1.85 16 38 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 41 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 43 H 0.05 2.31 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -81.90 356.90 0.88 -81.02 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.33 Total: 21.08 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.33 Total: 11.61 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -7.75 Total: -138.11 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.37 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -81.90 0.88 -81.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000865460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.476 kcal (2) G-P(sol) polarization free energy of solvation -81.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds