Wall clock time and date at job start Tue Mar 31 2020 14:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48499 * 109.47349 * 274.45697 * 3 2 1 5 5 H 1.48495 * 109.46989 * 34.46111 * 3 2 1 6 6 H 1.48499 * 109.46760 * 154.45646 * 3 2 1 7 7 C 1.38813 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00403 * 164.49679 * 7 2 1 9 9 N 1.36943 * 120.00188 * 344.49102 * 7 2 1 10 10 C 1.47003 * 121.37144 * 335.98169 * 9 7 2 11 11 C 1.50333 * 109.16402 * 222.96804 * 10 9 7 12 12 C 1.29452 * 123.65148 * 349.02422 * 11 10 9 13 13 C 1.50693 * 117.69724 * 180.85866 * 12 11 10 14 14 N 1.46497 * 109.47198 * 94.99675 * 13 12 11 15 15 C 1.34782 * 120.00194 * 180.02562 * 14 13 12 16 16 O 1.21642 * 119.99687 * 359.97438 * 15 14 13 17 17 C 1.47165 * 120.00151 * 180.02562 * 15 14 13 18 18 C 1.38593 * 120.72477 * 359.97438 * 17 15 14 19 19 C 1.38924 * 121.36230 * 179.74102 * 18 17 15 20 20 C 1.35829 * 122.59853 * 0.25872 * 19 18 17 21 21 C 1.40841 * 120.55446 * 0.02562 * 20 19 18 22 22 C 1.38425 * 134.89840 * 179.97438 * 21 20 19 23 23 N 1.33893 * 107.84710 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.01791 * 180.02562 * 23 22 21 25 25 N 1.39985 * 109.96026 * 0.02562 * 23 22 21 26 26 C 1.31475 * 109.01401 * 359.97438 * 25 23 22 27 27 C 1.49973 * 124.60922 * 1.13961 * 12 11 10 28 28 C 1.47341 * 121.37678 * 156.00453 * 9 7 2 29 29 H 0.97005 * 119.99762 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.52488 * 103.06301 * 10 9 7 31 31 H 1.08993 * 109.52499 * 342.87007 * 10 9 7 32 32 H 1.07997 * 118.17318 * 169.00081 * 11 10 9 33 33 H 1.09004 * 109.46863 * 335.00239 * 13 12 11 34 34 H 1.09000 * 109.47531 * 215.00241 * 13 12 11 35 35 H 0.96997 * 120.00301 * 0.02562 * 14 13 12 36 36 H 1.08002 * 119.32067 * 0.02951 * 18 17 15 37 37 H 1.07998 * 118.70013 * 180.23954 * 19 18 17 38 38 H 1.07992 * 119.72282 * 179.97438 * 20 19 18 39 39 H 1.08000 * 126.07564 * 0.04517 * 22 21 20 40 40 H 1.08998 * 109.31525 * 101.01021 * 27 12 11 41 41 H 1.09001 * 109.31284 * 220.44044 * 27 12 11 42 42 H 1.08994 * 109.77366 * 237.78972 * 28 9 7 43 43 H 1.09004 * 109.77571 * 358.59798 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1008 -1.3958 5 1 1.4980 2.6235 0.7922 6 1 3.5916 1.4146 0.6037 7 6 2.0101 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2505 9 7 1.3628 -2.3667 0.3160 10 6 0.1446 -2.3658 1.1388 11 6 0.2250 -3.4835 2.1409 12 6 1.1207 -4.4173 2.1036 13 6 1.0646 -5.4846 3.1659 14 7 0.3206 -6.6401 2.6584 15 6 0.1414 -7.7228 3.4409 16 8 0.5977 -7.7406 4.5683 17 6 -0.6055 -8.8838 2.9309 18 6 -1.1314 -8.8797 1.6487 19 6 -1.8340 -9.9704 1.1519 20 6 -2.0527 -11.0944 1.8825 21 6 -1.5652 -11.1982 3.1998 22 6 -1.6110 -12.1696 4.1849 23 7 -0.9603 -11.6988 5.2562 24 1 -0.8414 -12.1787 6.0906 25 7 -0.4769 -10.4115 4.9939 26 6 -0.8153 -10.0677 3.7709 27 6 2.2140 -4.5086 1.0810 28 6 1.8588 -3.6722 -0.1535 29 1 -0.4850 0.8401 0.0004 30 1 -0.7265 -2.5113 0.5000 31 1 0.0589 -1.4133 1.6617 32 1 -0.5048 -3.5085 2.9366 33 1 0.5644 -5.0906 4.0507 34 1 2.0775 -5.7908 3.4273 35 1 -0.0430 -6.6261 1.7593 36 1 -0.9882 -8.0126 1.0210 37 1 -2.2219 -9.9226 0.1451 38 1 -2.6057 -11.9150 1.4501 39 1 -2.0868 -13.1358 4.1037 40 1 3.1444 -4.1416 1.5142 41 1 2.3437 -5.5493 0.7839 42 1 1.0843 -4.1740 -0.7334 43 1 2.7473 -3.5296 -0.7687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001030437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:37 Heat of formation + Delta-G solvation = 104.987962 kcal Electronic energy + Delta-G solvation = -26235.487616 eV Core-core repulsion = 22476.384172 eV Total energy + Delta-G solvation = -3759.103444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51424 -39.51998 -37.73685 -37.02528 -34.85069 -32.94881 -32.28312 -31.25217 -30.63229 -29.71355 -29.18257 -26.82989 -24.99937 -24.10772 -22.74639 -22.17222 -21.91036 -20.97945 -20.05139 -18.47493 -17.78086 -17.48934 -17.01475 -15.84506 -15.78532 -15.40551 -15.27642 -15.03483 -14.67304 -14.30954 -14.14618 -13.84571 -13.60371 -13.52439 -13.20455 -12.91235 -12.37195 -12.26981 -12.11819 -11.96726 -11.90545 -11.53814 -11.31925 -10.90456 -10.77845 -10.71631 -10.53330 -10.37103 -10.29908 -9.82016 -9.76946 -9.55775 -9.17964 -8.85548 -8.66932 -8.03370 -7.92534 -6.73740 -5.79352 -3.17823 0.05047 1.49784 1.96400 2.35244 2.64081 2.96603 3.38595 3.45881 3.48494 3.56157 3.75630 3.93665 4.21383 4.50231 4.63290 4.75635 4.88151 5.00525 5.07582 5.21243 5.33315 5.38441 5.43739 5.57766 5.66647 5.88899 5.96707 6.00732 6.07132 6.12677 6.20566 6.21328 6.35657 6.47678 6.51391 6.61723 6.71665 6.75330 6.88762 7.19096 7.27993 7.32333 7.35454 7.70016 7.74714 7.84126 8.38656 8.40169 9.20097 9.82963 10.40880 11.31158 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.002231 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.292556 B =12546.130546 C =12950.036645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.125 4.125 12 C -0.166 4.166 13 C 0.159 3.841 14 N -0.719 5.719 15 C 0.553 3.447 16 O -0.529 6.529 17 C -0.116 4.116 18 C -0.029 4.029 19 C -0.168 4.168 20 C -0.014 4.014 21 C -0.221 4.221 22 C 0.089 3.911 23 N -0.431 5.431 24 H 0.444 0.556 25 N -0.270 5.270 26 C 0.137 3.863 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.190 0.810 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.024 0.976 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -26.359 4.432 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.146 4.146 12 C -0.167 4.167 13 C 0.037 3.963 14 N -0.371 5.371 15 C 0.340 3.660 16 O -0.406 6.406 17 C -0.123 4.123 18 C -0.052 4.052 19 C -0.187 4.187 20 C -0.034 4.034 21 C -0.231 4.231 22 C -0.068 4.068 23 N -0.131 5.131 24 H 0.289 0.711 25 N -0.095 5.095 26 C -0.021 4.021 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.207 0.793 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.367 -25.786 6.377 27.100 hybrid contribution -0.232 0.287 -0.616 0.718 sum -5.599 -25.499 5.761 26.735 Atomic orbital electron populations 1.70008 1.05169 1.25476 1.54854 1.24984 0.95403 0.98294 1.01290 0.86246 0.79141 0.83657 0.77552 1.21517 1.21580 1.20483 1.19182 0.92229 0.84355 1.41659 0.91384 1.44135 1.29259 1.01216 1.57268 1.19760 0.88773 0.94797 0.89754 1.23290 0.95905 0.96652 0.98707 1.20504 0.99916 0.97215 0.99017 1.20444 0.96112 0.84248 0.95511 1.46083 1.56851 1.16178 1.17968 1.17961 0.80232 0.82325 0.85432 1.90827 1.49632 1.81497 1.18686 1.19928 1.05661 0.92780 0.93885 1.21324 0.92573 0.98161 0.93110 1.20370 1.03410 0.93873 1.01090 1.20297 0.95012 0.97390 0.90700 1.19608 1.10649 0.95442 0.97385 1.22772 0.97145 0.99332 0.87584 1.46594 1.38964 1.13554 1.13964 0.71122 1.77889 1.22841 0.92732 1.16046 1.21514 0.95759 0.93775 0.91094 1.20794 0.96597 0.99054 0.96499 1.20992 0.97315 0.87172 0.92773 0.93632 0.94095 0.88908 0.88748 0.91636 0.91568 0.76584 0.84751 0.85215 0.85529 0.79307 0.91711 0.92849 0.95839 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.08 11.08 55.49 0.61 -25.46 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.68 9.71 -15.06 -0.15 -6.83 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.60 -14.76 3.01 -173.56 -0.52 -15.28 16 10 C 0.19 4.56 5.23 -5.10 -0.03 4.53 16 11 C -0.12 -2.38 9.47 -35.77 -0.34 -2.72 16 12 C -0.17 -2.88 5.22 -100.99 -0.53 -3.41 16 13 C 0.16 2.53 5.66 -5.20 -0.03 2.50 16 14 N -0.72 -10.23 5.50 -62.65 -0.34 -10.58 16 15 C 0.55 8.85 7.77 -12.63 -0.10 8.75 16 16 O -0.53 -10.52 16.32 5.24 0.09 -10.43 16 17 C -0.12 -1.57 6.05 -102.74 -0.62 -2.19 16 18 C -0.03 -0.29 9.50 -39.20 -0.37 -0.66 16 19 C -0.17 -1.34 9.83 -40.19 -0.39 -1.73 16 20 C -0.01 -0.10 10.02 -39.46 -0.40 -0.50 16 21 C -0.22 -2.10 6.34 -105.21 -0.67 -2.77 16 22 C 0.09 0.56 12.08 -16.58 -0.20 0.35 16 23 N -0.43 -3.46 7.18 30.86 0.22 -3.24 16 24 H 0.44 1.80 8.96 -182.69 -1.64 0.16 16 25 N -0.27 -3.79 12.24 34.35 0.42 -3.37 16 26 C 0.14 1.87 7.27 -80.98 -0.59 1.28 16 27 C -0.09 -1.58 5.95 -28.09 -0.17 -1.74 16 28 C 0.14 2.93 6.59 -3.43 -0.02 2.91 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 32 H 0.09 1.64 7.73 -52.49 -0.41 1.24 16 33 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.40 4.80 6.51 -40.82 -0.27 4.53 16 36 H 0.13 1.07 6.38 -52.49 -0.33 0.73 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.19 0.20 8.06 -52.49 -0.42 -0.22 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -36.52 360.70 -10.52 -47.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.72 Total: 1.54 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.68 Total: -2.35 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.39 Total: -57.93 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.52 -10.52 -47.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001030437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.035 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds