Wall clock time and date at job start Tue Mar 31 2020 14:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48499 * 109.47349 * 274.45697 * 3 2 1 5 5 H 1.48495 * 109.46989 * 34.46111 * 3 2 1 6 6 H 1.48499 * 109.46760 * 154.45646 * 3 2 1 7 7 C 1.38813 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00403 * 164.49679 * 7 2 1 9 9 N 1.36943 * 120.00188 * 344.49102 * 7 2 1 10 10 C 1.47003 * 121.37144 * 335.98169 * 9 7 2 11 11 C 1.50333 * 109.16402 * 222.96804 * 10 9 7 12 12 C 1.29452 * 123.65148 * 349.02422 * 11 10 9 13 13 C 1.50693 * 117.69724 * 180.85866 * 12 11 10 14 14 N 1.46497 * 109.47198 * 94.99675 * 13 12 11 15 15 C 1.34782 * 120.00194 * 180.02562 * 14 13 12 16 16 O 1.21642 * 119.99687 * 359.97438 * 15 14 13 17 17 C 1.47165 * 120.00151 * 180.02562 * 15 14 13 18 18 C 1.38593 * 120.72477 * 359.97438 * 17 15 14 19 19 C 1.38924 * 121.36230 * 179.74102 * 18 17 15 20 20 C 1.35829 * 122.59853 * 0.25872 * 19 18 17 21 21 C 1.40841 * 120.55446 * 0.02562 * 20 19 18 22 22 C 1.38425 * 134.89840 * 179.97438 * 21 20 19 23 23 N 1.33893 * 107.84710 * 180.02562 * 22 21 20 24 24 H 0.96996 * 125.01791 * 180.02562 * 23 22 21 25 25 N 1.39985 * 109.96026 * 0.02562 * 23 22 21 26 26 C 1.31475 * 109.01401 * 359.97438 * 25 23 22 27 27 C 1.49973 * 124.60922 * 1.13961 * 12 11 10 28 28 C 1.47341 * 121.37678 * 156.00453 * 9 7 2 29 29 H 0.97005 * 119.99762 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.52488 * 103.06301 * 10 9 7 31 31 H 1.08993 * 109.52499 * 342.87007 * 10 9 7 32 32 H 1.07997 * 118.17318 * 169.00081 * 11 10 9 33 33 H 1.09004 * 109.46863 * 335.00239 * 13 12 11 34 34 H 1.09000 * 109.47531 * 215.00241 * 13 12 11 35 35 H 0.96997 * 120.00301 * 0.02562 * 14 13 12 36 36 H 1.08002 * 119.32067 * 0.02951 * 18 17 15 37 37 H 1.07998 * 118.70013 * 180.23954 * 19 18 17 38 38 H 1.07992 * 119.72282 * 179.97438 * 20 19 18 39 39 H 1.08000 * 126.07564 * 0.04517 * 22 21 20 40 40 H 1.08998 * 109.31525 * 101.01021 * 27 12 11 41 41 H 1.09001 * 109.31284 * 220.44044 * 27 12 11 42 42 H 1.08994 * 109.77366 * 237.78972 * 28 9 7 43 43 H 1.09004 * 109.77571 * 358.59798 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1008 -1.3958 5 1 1.4980 2.6235 0.7922 6 1 3.5916 1.4146 0.6037 7 6 2.0101 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2505 9 7 1.3628 -2.3667 0.3160 10 6 0.1446 -2.3658 1.1388 11 6 0.2250 -3.4835 2.1409 12 6 1.1207 -4.4173 2.1036 13 6 1.0646 -5.4846 3.1659 14 7 0.3206 -6.6401 2.6584 15 6 0.1414 -7.7228 3.4409 16 8 0.5977 -7.7406 4.5683 17 6 -0.6055 -8.8838 2.9309 18 6 -1.1314 -8.8797 1.6487 19 6 -1.8340 -9.9704 1.1519 20 6 -2.0527 -11.0944 1.8825 21 6 -1.5652 -11.1982 3.1998 22 6 -1.6110 -12.1696 4.1849 23 7 -0.9603 -11.6988 5.2562 24 1 -0.8414 -12.1787 6.0906 25 7 -0.4769 -10.4115 4.9939 26 6 -0.8153 -10.0677 3.7709 27 6 2.2140 -4.5086 1.0810 28 6 1.8588 -3.6722 -0.1535 29 1 -0.4850 0.8401 0.0004 30 1 -0.7265 -2.5113 0.5000 31 1 0.0589 -1.4133 1.6617 32 1 -0.5048 -3.5085 2.9366 33 1 0.5644 -5.0906 4.0507 34 1 2.0775 -5.7908 3.4273 35 1 -0.0430 -6.6261 1.7593 36 1 -0.9882 -8.0126 1.0210 37 1 -2.2219 -9.9226 0.1451 38 1 -2.6057 -11.9150 1.4501 39 1 -2.0868 -13.1358 4.1037 40 1 3.1444 -4.1416 1.5142 41 1 2.3437 -5.5493 0.7839 42 1 1.0843 -4.1740 -0.7334 43 1 2.7473 -3.5296 -0.7687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001030437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:36 Heat of formation + Delta-G solvation = 79.144984 kcal Electronic energy + Delta-G solvation = -26236.608252 eV Core-core repulsion = 22476.384172 eV Total energy + Delta-G solvation = -3760.224079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18868 -40.69817 -39.30090 -37.77100 -36.38710 -34.55574 -33.13976 -32.60584 -31.70152 -31.35919 -29.98422 -28.40393 -26.13759 -25.39956 -24.38372 -23.19161 -22.80921 -22.43869 -20.99408 -19.50796 -19.13043 -18.51980 -17.80817 -17.34073 -17.02428 -16.91412 -16.31459 -16.12848 -15.74433 -15.62763 -15.29908 -15.22950 -14.99385 -14.89141 -14.46660 -14.09560 -13.88059 -13.63049 -13.25918 -13.02772 -12.93788 -12.79890 -12.69509 -12.60677 -12.56687 -12.22737 -12.09498 -11.69939 -11.56045 -11.26889 -11.26230 -10.86172 -10.67188 -10.14440 -9.83548 -9.65540 -8.73654 -8.62700 -7.87517 -5.28239 -0.61244 0.87066 1.17447 1.18489 1.46957 1.49081 1.58516 1.85027 2.06117 2.41487 2.52030 2.93426 3.29723 3.30891 3.59745 3.63811 3.85915 3.96605 3.97131 4.18216 4.25729 4.43610 4.46333 4.50743 4.54653 4.64246 4.71179 4.75538 4.84823 4.92517 4.98718 5.11671 5.22807 5.31326 5.36877 5.43159 5.43479 5.48928 5.58373 5.62610 5.77337 5.91784 6.16305 6.29075 6.35102 6.57140 6.66394 7.14588 7.27016 7.84729 8.38508 9.21189 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.002231 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.292556 B =12546.130546 C =12950.036645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.169 3.831 14 N -0.709 5.709 15 C 0.553 3.447 16 O -0.582 6.582 17 C -0.177 4.177 18 C -0.002 4.002 19 C -0.194 4.194 20 C 0.017 3.983 21 C -0.253 4.253 22 C 0.135 3.865 23 N -0.425 5.425 24 H 0.459 0.541 25 N -0.347 5.347 26 C 0.111 3.889 27 C -0.084 4.084 28 C 0.140 3.860 29 H 0.250 0.750 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.252 0.748 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.033 0.967 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -30.025 3.322 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.161 4.161 12 C -0.138 4.138 13 C 0.046 3.954 14 N -0.362 5.362 15 C 0.343 3.657 16 O -0.463 6.463 17 C -0.184 4.184 18 C -0.024 4.024 19 C -0.213 4.213 20 C -0.003 4.003 21 C -0.263 4.263 22 C -0.024 4.024 23 N -0.125 5.125 24 H 0.306 0.694 25 N -0.174 5.174 26 C -0.047 4.047 27 C -0.123 4.123 28 C 0.015 3.985 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.189 0.811 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.096 -29.475 5.250 30.553 hybrid contribution -0.072 1.143 -0.312 1.187 sum -6.168 -28.332 4.938 29.413 Atomic orbital electron populations 1.70161 1.06451 1.25748 1.56189 1.25727 0.96187 1.01293 1.01757 0.85263 0.78056 0.79764 0.77398 1.21128 1.22013 1.19718 1.19507 0.92549 0.85624 1.40885 0.91234 1.44412 1.29427 1.02203 1.57909 1.19399 0.87852 0.94747 0.89898 1.22962 0.98030 0.96181 0.98940 1.20573 0.98431 0.96392 0.98433 1.20200 0.96277 0.84311 0.94604 1.45876 1.56558 1.15350 1.18393 1.18463 0.79525 0.83005 0.84717 1.90778 1.52106 1.82549 1.20896 1.19796 1.09804 0.92805 0.95996 1.21631 0.90147 0.99141 0.91519 1.20736 1.04224 0.93594 1.02758 1.20859 0.92180 0.97960 0.89294 1.20135 1.11812 0.95187 0.99174 1.23784 0.93355 1.00062 0.85216 1.46626 1.38351 1.12254 1.15260 0.69404 1.77774 1.26336 0.95854 1.17436 1.21864 0.96334 0.95005 0.91465 1.20736 0.96106 1.00424 0.95029 1.21181 0.97522 0.85675 0.94169 0.94126 0.96449 0.92525 0.87238 0.92481 0.91708 0.75200 0.83389 0.82165 0.81060 0.73175 0.91953 0.89421 0.94933 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.57 11.08 21.65 0.24 -55.33 16 2 C -0.05 -3.09 5.01 84.86 0.42 -2.66 16 3 Si 0.97 45.42 29.58 68.60 2.03 47.45 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.26 -14.14 9.71 84.03 0.82 -13.32 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.62 -30.96 3.01 -703.02 -2.11 -33.07 16 10 C 0.21 10.04 5.23 85.42 0.45 10.49 16 11 C -0.14 -5.44 9.47 27.11 0.26 -5.19 16 12 C -0.14 -4.70 5.22 -15.14 -0.08 -4.78 16 13 C 0.17 5.38 5.66 85.63 0.48 5.86 16 14 N -0.71 -20.20 5.50 -470.35 -2.59 -22.79 16 15 C 0.55 18.39 7.77 86.59 0.67 19.07 16 16 O -0.58 -24.61 16.32 -4.16 -0.07 -24.68 16 17 C -0.18 -4.86 6.05 -18.65 -0.11 -4.97 16 18 C 0.00 -0.04 9.50 22.52 0.21 0.18 16 19 C -0.19 -2.42 9.83 21.87 0.21 -2.20 16 20 C 0.02 0.18 10.02 22.35 0.22 0.40 16 21 C -0.25 -4.07 6.34 -20.24 -0.13 -4.20 16 22 C 0.14 1.12 12.08 84.42 1.02 2.14 16 23 N -0.42 -6.11 7.18 -56.28 -0.40 -6.51 16 24 H 0.46 2.97 8.96 -213.40 -1.91 1.05 16 25 N -0.35 -10.04 12.24 -45.22 -0.55 -10.60 16 26 C 0.11 3.03 7.27 43.75 0.32 3.35 16 27 C -0.08 -2.81 5.95 29.72 0.18 -2.63 16 28 C 0.14 5.58 6.59 86.31 0.57 6.15 16 29 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 3.14 6.41 -2.39 -0.02 3.12 16 32 H 0.11 3.88 7.73 -2.91 -0.02 3.86 16 33 H 0.06 1.93 7.78 -2.38 -0.02 1.91 16 34 H 0.06 2.11 8.11 -2.39 -0.02 2.09 16 35 H 0.41 9.50 6.51 -92.71 -0.60 8.90 16 36 H 0.15 2.09 6.38 -2.91 -0.02 2.07 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.25 -1.28 8.06 -2.91 -0.02 -1.30 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 Total: -1.00 -86.53 360.70 0.61 -85.92 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -1.45 Total: 11.93 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.52 Total: 7.67 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -5.42 Total: -128.29 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -86.53 0.61 -85.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001030437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.065 kcal (2) G-P(sol) polarization free energy of solvation -86.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds