Wall clock time and date at job start Tue Mar 31 2020 15:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47327 * 274.45358 * 3 2 1 5 5 H 1.48492 * 109.47244 * 34.45648 * 3 2 1 6 6 H 1.48505 * 109.46594 * 154.45514 * 3 2 1 7 7 C 1.38816 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99591 * 164.49584 * 7 2 1 9 9 N 1.36930 * 119.99642 * 344.49378 * 7 2 1 10 10 C 1.47004 * 121.38176 * 335.97710 * 9 7 2 11 11 C 1.50320 * 109.16844 * 222.97219 * 10 9 7 12 12 C 1.29452 * 123.65399 * 349.01989 * 11 10 9 13 13 C 1.50693 * 117.69759 * 180.85914 * 12 11 10 14 14 N 1.46500 * 109.47150 * 94.99923 * 13 12 11 15 15 C 1.34780 * 120.00287 * 180.02562 * 14 13 12 16 16 O 1.21589 * 119.99811 * 359.97438 * 15 14 13 17 17 C 1.47572 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.41758 * 120.01713 * 0.02562 * 17 15 14 19 19 C 1.35622 * 119.54498 * 180.02562 * 18 17 15 20 20 C 1.41180 * 119.50410 * 0.02562 * 19 18 17 21 21 N 1.32412 * 132.11722 * 179.97438 * 20 19 18 22 22 C 1.33588 * 109.22945 * 179.97438 * 21 20 19 23 23 C 1.35006 * 108.65951 * 0.04600 * 22 21 20 24 24 N 1.37010 * 107.14136 * 359.94913 * 23 22 21 25 25 C 1.35912 * 132.42249 * 180.02562 * 24 23 22 26 26 C 1.49971 * 124.60641 * 1.13739 * 12 11 10 27 27 C 1.47346 * 121.37262 * 156.00240 * 9 7 2 28 28 H 0.97002 * 119.99845 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.52081 * 103.06044 * 10 9 7 30 30 H 1.09009 * 109.51897 * 342.88127 * 10 9 7 31 31 H 1.08003 * 118.17282 * 169.00166 * 11 10 9 32 32 H 1.09000 * 109.47092 * 335.00051 * 13 12 11 33 33 H 1.09001 * 109.47388 * 215.00135 * 13 12 11 34 34 H 0.97003 * 120.00445 * 359.97438 * 14 13 12 35 35 H 1.08004 * 120.22536 * 0.02562 * 18 17 15 36 36 H 1.07994 * 120.25047 * 179.72178 * 19 18 17 37 37 H 1.07996 * 125.67484 * 179.97438 * 22 21 20 38 38 H 1.07991 * 126.43020 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.75792 * 0.02562 * 25 24 23 40 40 H 1.08997 * 109.31172 * 101.01123 * 26 12 11 41 41 H 1.09004 * 109.31397 * 220.43487 * 26 12 11 42 42 H 1.08998 * 109.77718 * 237.78844 * 27 9 7 43 43 H 1.08999 * 109.77686 * 358.59643 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4979 2.6236 0.7921 6 1 3.5916 1.4148 0.6038 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2190 -0.2506 9 7 1.3629 -2.3665 0.3160 10 6 0.1447 -2.3658 1.1388 11 6 0.2252 -3.4835 2.1408 12 6 1.1209 -4.4174 2.1034 13 6 1.0647 -5.4847 3.1657 14 7 0.3208 -6.6402 2.6581 15 6 0.1416 -7.7229 3.4405 16 8 0.5977 -7.7408 4.5675 17 6 -0.6073 -8.8871 2.9290 18 6 -1.1378 -8.8672 1.6146 19 6 -1.8249 -9.9422 1.1544 20 6 -2.0018 -11.0648 1.9920 21 7 -2.6156 -12.2233 1.8063 22 6 -2.5036 -12.9629 2.9131 23 6 -1.8030 -12.2634 3.8310 24 7 -1.4788 -11.0606 3.2608 25 6 -0.7898 -9.9835 3.7216 26 6 2.2141 -4.5086 1.0808 27 6 1.8590 -3.6721 -0.1536 28 1 -0.4850 0.8401 0.0004 29 1 -0.7264 -2.5114 0.4999 30 1 0.0589 -1.4132 1.6617 31 1 -0.5048 -3.5086 2.9364 32 1 0.5646 -5.0907 4.0505 33 1 2.0776 -5.7909 3.4271 34 1 -0.0434 -6.6259 1.7592 35 1 -0.9957 -8.0020 0.9840 36 1 -2.2377 -9.9375 0.1565 37 1 -2.9075 -13.9550 3.0513 38 1 -1.5453 -12.5911 4.8272 39 1 -0.3839 -9.9949 4.7224 40 1 3.1445 -4.1415 1.5141 41 1 2.3440 -5.5493 0.7837 42 1 1.0846 -4.1740 -0.7336 43 1 2.7474 -3.5295 -0.7688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001355311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:24 Heat of formation + Delta-G solvation = 100.292217 kcal Electronic energy + Delta-G solvation = -26149.065790 eV Core-core repulsion = 22389.758723 eV Total energy + Delta-G solvation = -3759.307066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.20821 -40.11522 -37.97571 -37.20020 -35.18004 -34.12667 -32.98102 -31.27792 -30.62561 -29.76976 -29.15650 -27.16636 -24.96565 -23.75107 -23.49846 -22.80151 -22.14431 -21.21529 -20.90346 -18.66438 -17.94200 -17.59544 -16.91372 -16.36044 -16.08346 -15.79671 -15.39662 -15.11237 -14.97712 -14.89602 -14.34653 -14.02026 -13.89436 -13.72732 -13.46887 -13.45600 -13.09263 -12.39581 -12.22222 -12.12616 -12.01412 -11.63818 -11.48819 -11.43119 -10.97335 -10.77533 -10.53924 -10.51267 -10.38255 -10.27487 -9.88837 -9.67781 -9.36144 -9.09489 -8.74698 -8.30249 -8.15523 -6.81065 -5.85691 -3.24447 0.15541 0.66710 2.01358 2.19773 2.50158 2.78555 3.29265 3.32728 3.34380 3.41754 3.43901 3.79776 4.12015 4.23713 4.40824 4.44638 4.49082 4.88913 4.91886 5.03926 5.08838 5.26024 5.33479 5.41308 5.48435 5.54103 5.63173 5.72041 5.83673 5.96416 5.99113 6.08010 6.18706 6.24735 6.27264 6.43284 6.55025 6.65778 6.79479 7.07688 7.17079 7.22946 7.36635 7.43407 7.65825 7.75488 7.97047 8.31927 9.13484 9.76164 10.33662 11.24835 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.002135 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.362707 B =13109.438222 C =13502.790727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.170 4.170 13 C 0.157 3.843 14 N -0.709 5.709 15 C 0.567 3.433 16 O -0.543 6.543 17 C -0.157 4.157 18 C -0.079 4.079 19 C -0.080 4.080 20 C 0.231 3.769 21 N -0.492 5.492 22 C 0.034 3.966 23 C -0.096 4.096 24 N -0.368 5.368 25 C 0.131 3.869 26 C -0.090 4.090 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.043 0.957 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.403 0.597 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.179 0.821 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.024 0.976 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -21.730 6.336 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.359 5.359 15 C 0.353 3.647 16 O -0.422 6.422 17 C -0.163 4.163 18 C -0.103 4.103 19 C -0.100 4.100 20 C -0.013 4.013 21 N -0.211 5.211 22 C -0.116 4.116 23 C -0.225 4.225 24 N -0.040 5.040 25 C 0.006 3.994 26 C -0.129 4.129 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.201 0.799 38 H 0.203 0.797 39 H 0.196 0.804 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.575 -21.858 6.478 23.076 hybrid contribution 0.575 1.051 0.495 1.296 sum -3.001 -20.807 6.974 22.149 Atomic orbital electron populations 1.70002 1.05182 1.25564 1.54723 1.24994 0.95410 0.98342 1.01178 0.86243 0.79134 0.83591 0.77607 1.21471 1.21552 1.20459 1.19172 0.92250 0.84312 1.41841 0.91344 1.44128 1.29228 1.01232 1.57246 1.19778 0.88866 0.94795 0.89776 1.23325 0.95679 0.96567 0.98558 1.20482 1.00158 0.97268 0.99128 1.20534 0.96167 0.84037 0.95721 1.46071 1.55899 1.15922 1.18037 1.17672 0.79724 0.82186 0.85151 1.90802 1.50668 1.81817 1.18924 1.19422 1.05501 0.95662 0.95738 1.21136 0.96126 0.98908 0.94171 1.20199 1.00343 0.89422 1.00033 1.21204 0.99010 0.96563 0.84493 1.70763 1.22339 1.01745 1.26266 1.22587 0.99567 1.00425 0.89041 1.22810 1.10977 0.86041 1.02691 1.42853 1.34998 1.12343 1.13823 1.21696 0.92784 0.84632 1.00303 1.20795 0.96575 0.99051 0.96521 1.20994 0.97390 0.87191 0.92737 0.93574 0.93982 0.88810 0.88703 0.91292 0.91203 0.76132 0.83360 0.82369 0.79926 0.79675 0.80404 0.91652 0.92885 0.95832 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.47 11.08 55.49 0.61 -24.86 16 2 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16 3 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.53 9.71 -15.06 -0.15 -6.68 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -14.19 3.01 -173.56 -0.52 -14.71 16 10 C 0.19 4.32 5.23 -5.10 -0.03 4.30 16 11 C -0.12 -2.12 9.47 -35.78 -0.34 -2.46 16 12 C -0.17 -2.66 5.22 -100.99 -0.53 -3.18 16 13 C 0.16 2.12 5.66 -5.20 -0.03 2.09 16 14 N -0.71 -8.10 5.50 -62.52 -0.34 -8.45 16 15 C 0.57 6.84 7.76 -12.45 -0.10 6.74 16 16 O -0.54 -8.21 16.27 5.29 0.09 -8.13 16 17 C -0.16 -1.55 5.84 -105.37 -0.61 -2.17 16 18 C -0.08 -0.66 9.53 -39.17 -0.37 -1.03 16 19 C -0.08 -0.71 10.09 -39.40 -0.40 -1.11 16 20 C 0.23 2.54 7.81 -155.92 -1.22 1.32 16 21 N -0.49 -5.75 11.31 -12.72 -0.14 -5.89 16 22 C 0.03 0.30 11.82 -17.94 -0.21 0.08 16 23 C -0.10 -0.76 11.76 -16.39 -0.19 -0.95 16 24 N -0.37 -3.61 2.93 -62.30 -0.18 -3.79 16 25 C 0.13 1.24 10.49 -16.37 -0.17 1.07 16 26 C -0.09 -1.45 5.95 -28.09 -0.17 -1.62 16 27 C 0.14 2.77 6.59 -3.43 -0.02 2.75 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 2.38 6.41 -51.92 -0.33 2.04 16 31 H 0.09 1.49 7.73 -52.48 -0.41 1.09 16 32 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 33 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.40 3.88 6.50 -40.82 -0.27 3.62 16 35 H 0.15 0.90 6.44 -52.48 -0.34 0.56 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.18 1.46 7.56 -52.49 -0.40 1.06 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -32.57 360.35 -10.20 -42.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.48 Total: 2.40 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.62 Total: -0.97 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.58 Total: -57.70 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.57 -10.20 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001355311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.059 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds