Wall clock time and date at job start Tue Mar 31 2020 15:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47327 * 274.45358 * 3 2 1 5 5 H 1.48492 * 109.47244 * 34.45648 * 3 2 1 6 6 H 1.48505 * 109.46594 * 154.45514 * 3 2 1 7 7 C 1.38816 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99591 * 164.49584 * 7 2 1 9 9 N 1.36930 * 119.99642 * 344.49378 * 7 2 1 10 10 C 1.47004 * 121.38176 * 335.97710 * 9 7 2 11 11 C 1.50320 * 109.16844 * 222.97219 * 10 9 7 12 12 C 1.29452 * 123.65399 * 349.01989 * 11 10 9 13 13 C 1.50693 * 117.69759 * 180.85914 * 12 11 10 14 14 N 1.46500 * 109.47150 * 94.99923 * 13 12 11 15 15 C 1.34780 * 120.00287 * 180.02562 * 14 13 12 16 16 O 1.21589 * 119.99811 * 359.97438 * 15 14 13 17 17 C 1.47572 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.41758 * 120.01713 * 0.02562 * 17 15 14 19 19 C 1.35622 * 119.54498 * 180.02562 * 18 17 15 20 20 C 1.41180 * 119.50410 * 0.02562 * 19 18 17 21 21 N 1.32412 * 132.11722 * 179.97438 * 20 19 18 22 22 C 1.33588 * 109.22945 * 179.97438 * 21 20 19 23 23 C 1.35006 * 108.65951 * 0.04600 * 22 21 20 24 24 N 1.37010 * 107.14136 * 359.94913 * 23 22 21 25 25 C 1.35912 * 132.42249 * 180.02562 * 24 23 22 26 26 C 1.49971 * 124.60641 * 1.13739 * 12 11 10 27 27 C 1.47346 * 121.37262 * 156.00240 * 9 7 2 28 28 H 0.97002 * 119.99845 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.52081 * 103.06044 * 10 9 7 30 30 H 1.09009 * 109.51897 * 342.88127 * 10 9 7 31 31 H 1.08003 * 118.17282 * 169.00166 * 11 10 9 32 32 H 1.09000 * 109.47092 * 335.00051 * 13 12 11 33 33 H 1.09001 * 109.47388 * 215.00135 * 13 12 11 34 34 H 0.97003 * 120.00445 * 359.97438 * 14 13 12 35 35 H 1.08004 * 120.22536 * 0.02562 * 18 17 15 36 36 H 1.07994 * 120.25047 * 179.72178 * 19 18 17 37 37 H 1.07996 * 125.67484 * 179.97438 * 22 21 20 38 38 H 1.07991 * 126.43020 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.75792 * 0.02562 * 25 24 23 40 40 H 1.08997 * 109.31172 * 101.01123 * 26 12 11 41 41 H 1.09004 * 109.31397 * 220.43487 * 26 12 11 42 42 H 1.08998 * 109.77718 * 237.78844 * 27 9 7 43 43 H 1.08999 * 109.77686 * 358.59643 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4979 2.6236 0.7921 6 1 3.5916 1.4148 0.6038 7 6 2.0103 -1.2022 -0.0005 8 1 3.0607 -1.2190 -0.2506 9 7 1.3629 -2.3665 0.3160 10 6 0.1447 -2.3658 1.1388 11 6 0.2252 -3.4835 2.1408 12 6 1.1209 -4.4174 2.1034 13 6 1.0647 -5.4847 3.1657 14 7 0.3208 -6.6402 2.6581 15 6 0.1416 -7.7229 3.4405 16 8 0.5977 -7.7408 4.5675 17 6 -0.6073 -8.8871 2.9290 18 6 -1.1378 -8.8672 1.6146 19 6 -1.8249 -9.9422 1.1544 20 6 -2.0018 -11.0648 1.9920 21 7 -2.6156 -12.2233 1.8063 22 6 -2.5036 -12.9629 2.9131 23 6 -1.8030 -12.2634 3.8310 24 7 -1.4788 -11.0606 3.2608 25 6 -0.7898 -9.9835 3.7216 26 6 2.2141 -4.5086 1.0808 27 6 1.8590 -3.6721 -0.1536 28 1 -0.4850 0.8401 0.0004 29 1 -0.7264 -2.5114 0.4999 30 1 0.0589 -1.4132 1.6617 31 1 -0.5048 -3.5086 2.9364 32 1 0.5646 -5.0907 4.0505 33 1 2.0776 -5.7909 3.4271 34 1 -0.0434 -6.6259 1.7592 35 1 -0.9957 -8.0020 0.9840 36 1 -2.2377 -9.9375 0.1565 37 1 -2.9075 -13.9550 3.0513 38 1 -1.5453 -12.5911 4.8272 39 1 -0.3839 -9.9949 4.7224 40 1 3.1445 -4.1415 1.5141 41 1 2.3440 -5.5493 0.7837 42 1 1.0846 -4.1740 -0.7336 43 1 2.7474 -3.5295 -0.7688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001355311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:23 Heat of formation + Delta-G solvation = 81.224281 kcal Electronic energy + Delta-G solvation = -26149.892637 eV Core-core repulsion = 22389.758723 eV Total energy + Delta-G solvation = -3760.133914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.88428 -41.07389 -39.38869 -38.00448 -36.48735 -34.96107 -34.41362 -32.71582 -31.64607 -31.31921 -29.81739 -28.60832 -26.31142 -24.90684 -24.29722 -24.18914 -22.89666 -22.71618 -21.81322 -19.61264 -19.31628 -18.66004 -17.61577 -17.35318 -17.09002 -16.99249 -16.96008 -16.23555 -16.00253 -15.65076 -15.54928 -15.32759 -15.17025 -14.89777 -14.63816 -14.46061 -14.13385 -13.94219 -13.63802 -13.24955 -12.96158 -12.83645 -12.79010 -12.75816 -12.57065 -12.22653 -12.14814 -12.09154 -11.68971 -11.37882 -11.25006 -11.19735 -10.67505 -10.25142 -9.91267 -9.64655 -8.96494 -8.73064 -7.87667 -5.28106 -0.55735 -0.00083 1.11730 1.43952 1.46524 1.47090 1.49158 1.58261 2.02670 2.34261 2.51966 2.53768 3.16924 3.29779 3.47143 3.52086 3.64138 3.67557 3.85647 3.90122 3.99769 4.29444 4.39425 4.46452 4.46973 4.56983 4.67153 4.76765 4.80673 4.86180 4.90194 4.94688 4.98865 5.12950 5.23883 5.27541 5.34838 5.42731 5.51363 5.58331 5.63068 5.78863 5.88307 6.18606 6.35302 6.43443 6.75961 7.05565 7.15124 7.85604 8.38456 9.20754 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031091 B = 0.002135 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.362707 B =13109.438222 C =13502.790727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.203 3.797 11 C -0.139 4.139 12 C -0.140 4.140 13 C 0.168 3.832 14 N -0.701 5.701 15 C 0.573 3.427 16 O -0.575 6.575 17 C -0.164 4.164 18 C -0.073 4.073 19 C -0.087 4.087 20 C 0.206 3.794 21 N -0.526 5.526 22 C 0.019 3.981 23 C -0.091 4.091 24 N -0.374 5.374 25 C 0.134 3.866 26 C -0.085 4.085 27 C 0.137 3.863 28 H 0.249 0.751 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.210 0.790 38 H 0.220 0.780 39 H 0.189 0.811 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -23.605 7.013 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.078 3.922 11 C -0.160 4.160 12 C -0.141 4.141 13 C 0.045 3.955 14 N -0.352 5.352 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.171 4.171 18 C -0.097 4.097 19 C -0.107 4.107 20 C -0.037 4.037 21 N -0.246 5.246 22 C -0.129 4.129 23 C -0.220 4.220 24 N -0.047 5.047 25 C 0.008 3.992 26 C -0.123 4.123 27 C 0.012 3.988 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.227 0.773 38 H 0.237 0.763 39 H 0.206 0.794 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.049 0.951 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.708 -23.775 7.135 24.970 hybrid contribution 0.328 1.487 0.274 1.548 sum -2.380 -22.288 7.409 23.607 Atomic orbital electron populations 1.70157 1.06421 1.25710 1.56257 1.25715 0.96166 1.01259 1.01845 0.85286 0.78132 0.79878 0.77318 1.21355 1.22047 1.19604 1.19494 0.92530 0.85643 1.40782 0.91265 1.44416 1.29443 1.02172 1.57952 1.19418 0.87726 0.95008 0.90020 1.22966 0.98152 0.96030 0.98830 1.20588 0.98275 0.96629 0.98577 1.20306 0.96793 0.83822 0.94599 1.45870 1.55595 1.15211 1.18534 1.17838 0.79157 0.82451 0.84543 1.90791 1.52091 1.82438 1.20323 1.19274 1.06104 0.95089 0.96585 1.21300 0.95347 0.99392 0.93661 1.20441 1.00557 0.89072 1.00627 1.21595 0.99659 0.97087 0.85408 1.70731 1.23389 1.02630 1.27885 1.23164 0.99773 1.01501 0.88494 1.23461 1.09673 0.85056 1.03775 1.43014 1.35025 1.12879 1.13753 1.21866 0.92227 0.84458 1.00631 1.20734 0.96266 1.00433 0.94894 1.21200 0.97406 0.85750 0.94433 0.94169 0.96676 0.92628 0.86802 0.91456 0.90694 0.74860 0.81179 0.80869 0.77285 0.76345 0.79379 0.91874 0.89143 0.95090 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.29 11.08 21.65 0.24 -54.05 16 2 C -0.06 -3.02 5.01 84.86 0.43 -2.60 16 3 Si 0.97 44.30 29.58 68.60 2.03 46.33 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.25 -13.62 9.71 84.04 0.82 -12.81 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.62 -29.56 3.01 -703.02 -2.11 -31.67 16 10 C 0.20 9.36 5.23 85.42 0.45 9.81 16 11 C -0.14 -4.80 9.47 27.11 0.26 -4.54 16 12 C -0.14 -4.06 5.22 -15.14 -0.08 -4.14 16 13 C 0.17 4.03 5.66 85.63 0.48 4.51 16 14 N -0.70 -13.96 5.50 -469.97 -2.58 -16.54 16 15 C 0.57 12.46 7.76 86.71 0.67 13.13 16 16 O -0.58 -16.27 16.27 -3.99 -0.07 -16.34 16 17 C -0.16 -2.90 5.84 -20.35 -0.12 -3.02 16 18 C -0.07 -1.05 9.53 22.53 0.21 -0.83 16 19 C -0.09 -1.41 10.09 22.39 0.23 -1.19 16 20 C 0.21 4.28 7.81 134.16 1.05 5.33 16 21 N -0.53 -11.84 11.31 -194.14 -2.20 -14.04 16 22 C 0.02 0.31 11.82 83.68 0.99 1.30 16 23 C -0.09 -1.25 11.76 83.14 0.98 -0.27 16 24 N -0.37 -6.70 2.93 -351.03 -1.03 -7.73 16 25 C 0.13 2.28 10.49 83.66 0.88 3.16 16 26 C -0.08 -2.48 5.95 29.72 0.18 -2.30 16 27 C 0.14 5.13 6.59 86.31 0.57 5.70 16 28 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 2.95 6.41 -2.38 -0.02 2.93 16 31 H 0.11 3.46 7.73 -2.91 -0.02 3.44 16 32 H 0.07 1.71 7.78 -2.39 -0.02 1.69 16 33 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 34 H 0.41 6.57 6.50 -92.71 -0.60 5.97 16 35 H 0.17 1.55 6.44 -2.91 -0.02 1.53 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.22 1.23 8.06 -2.92 -0.02 1.20 16 39 H 0.19 2.71 7.56 -2.91 -0.02 2.69 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 2.12 7.96 -2.39 -0.02 2.10 16 Total: -1.00 -72.05 360.35 2.70 -69.34 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.44 Total: 13.45 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 7.98 Total: 11.24 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -7.68 Total: -124.03 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.07 Total: -16.34 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.05 2.70 -69.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001355311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.566 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds