Wall clock time and date at job start Tue Mar 31 2020 15:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21619 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.47390 * 120.00183 * 179.97438 * 15 14 13 18 18 N 1.31570 * 126.82001 * 0.03148 * 17 15 14 19 19 N 1.28393 * 111.96473 * 180.02562 * 18 17 15 20 20 H 0.97001 * 124.37155 * 180.02562 * 19 18 17 21 21 C 1.37044 * 111.25224 * 359.97438 * 19 18 17 22 22 C 1.39129 * 134.72406 * 179.97438 * 21 19 18 23 23 C 1.36687 * 119.78291 * 179.25174 * 22 21 19 24 24 C 1.38906 * 120.89545 * 0.62982 * 23 22 21 25 25 C 1.36718 * 120.51973 * 359.59445 * 24 23 22 26 26 C 1.39195 * 119.50983 * 0.02562 * 25 24 23 27 27 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 28 28 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 29 29 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 31 31 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 32 32 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 33 33 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 34 34 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 35 35 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 36 36 H 1.07997 * 120.10640 * 359.97438 * 22 21 19 37 37 H 1.07998 * 119.55561 * 180.22757 * 23 22 21 38 38 H 1.07994 * 119.74080 * 179.58004 * 24 23 22 39 39 H 1.07996 * 120.24654 * 179.97438 * 25 24 23 40 40 H 1.08995 * 109.43781 * 221.06658 * 27 12 11 41 41 H 1.09004 * 109.12988 * 101.67266 * 27 12 11 42 42 H 1.09002 * 109.78070 * 237.79078 * 28 9 7 43 43 H 1.09002 * 109.77840 * 358.60673 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6105 -7.7299 4.5848 17 6 -0.5907 -8.8841 2.9511 18 7 -1.1383 -9.0144 1.7619 19 7 -1.7197 -10.1507 1.6228 20 1 -2.1804 -10.4352 0.8181 21 6 -1.6042 -10.9100 2.7578 22 6 -2.0347 -12.1779 3.1355 23 6 -1.7274 -12.6571 4.3782 24 6 -0.9998 -11.8896 5.2788 25 6 -0.5684 -10.6386 4.9350 26 6 -0.8638 -10.1346 3.6715 27 6 2.2100 -4.5114 1.0801 28 6 1.8589 -3.6722 -0.1514 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7267 -2.5110 0.5007 31 1 0.0583 -1.4124 1.6622 32 1 -0.5059 -3.5069 2.9378 33 1 2.0837 -5.7793 3.4375 34 1 0.5684 -5.0815 4.0581 35 1 -0.0338 -6.6271 1.7722 36 1 -2.5999 -12.7862 2.4449 37 1 -2.0603 -13.6433 4.6662 38 1 -0.7732 -12.2840 6.2582 39 1 -0.0034 -10.0455 5.6387 40 1 2.3355 -5.5525 0.7830 41 1 3.1429 -4.1472 1.5106 42 1 1.0845 -4.1744 -0.7314 43 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001422249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:54 Heat of formation + Delta-G solvation = 92.140448 kcal Electronic energy + Delta-G solvation = -26150.599879 eV Core-core repulsion = 22390.939325 eV Total energy + Delta-G solvation = -3759.660554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.74530 -39.43597 -38.05680 -37.70445 -34.93359 -33.08334 -32.62798 -30.95087 -30.52199 -30.11295 -29.66327 -27.08927 -24.80738 -23.76828 -23.16610 -22.71292 -22.52111 -21.05722 -20.23457 -18.56238 -17.85408 -17.58527 -16.90985 -16.11737 -15.76023 -15.66027 -15.55734 -15.15190 -14.72752 -14.53413 -14.29534 -13.95000 -13.75094 -13.58606 -13.33683 -12.92871 -12.52461 -12.34339 -12.24753 -12.03343 -11.57494 -11.54066 -11.35366 -11.23316 -10.90333 -10.73025 -10.45659 -10.42147 -10.33649 -10.16060 -9.82780 -9.59460 -9.11261 -8.99759 -8.67980 -8.40457 -8.05571 -6.74762 -5.79828 -3.18625 0.52632 1.03775 1.66847 2.35314 2.60013 3.16527 3.39187 3.42746 3.44835 3.46341 3.52483 4.10796 4.17695 4.49466 4.52066 4.65343 4.86454 5.06803 5.12506 5.22927 5.34929 5.36170 5.40468 5.58753 5.64444 5.83063 5.87103 5.95172 6.07814 6.11524 6.18384 6.19611 6.35438 6.41633 6.48278 6.53526 6.67831 6.74075 6.87937 7.17389 7.26056 7.32045 7.40567 7.66520 7.72995 7.82492 8.18713 8.38006 9.19349 9.82114 10.40249 11.30644 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.034053 B = 0.002142 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.043012 B =13066.321323 C =13375.635585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.123 4.123 12 C -0.167 4.167 13 C 0.157 3.843 14 N -0.704 5.704 15 C 0.601 3.399 16 O -0.535 6.535 17 C 0.008 3.992 18 N -0.203 5.203 19 N -0.415 5.415 20 H 0.447 0.553 21 C 0.063 3.937 22 C -0.121 4.121 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.041 4.041 26 C -0.109 4.109 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 -25.381 6.398 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.144 4.144 12 C -0.167 4.167 13 C 0.035 3.965 14 N -0.355 5.355 15 C 0.385 3.615 16 O -0.410 6.410 17 C -0.163 4.163 18 N -0.033 5.033 19 N -0.134 5.134 20 H 0.293 0.707 21 C -0.050 4.050 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.162 4.162 25 C -0.062 4.062 26 C -0.117 4.117 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.891 -24.602 6.197 25.838 hybrid contribution -0.064 0.255 -0.216 0.341 sum -4.955 -24.347 5.981 25.556 Atomic orbital electron populations 1.69998 1.05167 1.25629 1.54741 1.24992 0.95410 0.98310 1.01242 0.86315 0.78811 0.83233 0.78097 1.20945 1.21647 1.21052 1.19142 0.92206 0.84365 1.41812 0.91397 1.44123 1.29207 1.01200 1.57308 1.19765 0.88809 0.94771 0.89771 1.23299 0.95670 0.96692 0.98693 1.20471 1.00064 0.97226 0.98964 1.20535 0.96233 0.84009 0.95715 1.46061 1.55784 1.15518 1.18171 1.16676 0.79164 0.80796 0.84890 1.90792 1.50255 1.81324 1.18633 1.22857 1.05856 0.96511 0.91094 1.72947 1.07137 1.03336 1.19876 1.43043 1.45627 1.10445 1.14311 0.70731 1.19222 1.01947 0.95422 0.88398 1.19778 1.03910 0.92545 0.98030 1.20757 0.97174 0.99788 0.92717 1.20866 1.00375 0.94566 1.00345 1.20443 0.96794 0.95045 0.93873 1.19433 1.02887 0.93308 0.96038 1.20757 0.96660 0.99069 0.96456 1.20954 0.97359 0.87149 0.92806 0.93553 0.94090 0.88847 0.88708 0.91219 0.91292 0.75671 0.85413 0.85120 0.85203 0.84271 0.92806 0.91720 0.95902 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.13 11.08 55.49 0.61 -25.51 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 3 Si 0.91 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.71 9.71 -15.06 -0.15 -6.86 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.60 -14.82 3.01 -173.67 -0.52 -15.34 16 10 C 0.19 4.57 5.23 -5.10 -0.03 4.54 16 11 C -0.12 -2.34 9.47 -35.78 -0.34 -2.68 16 12 C -0.17 -2.88 5.23 -101.00 -0.53 -3.40 16 13 C 0.16 2.39 5.66 -5.20 -0.03 2.37 16 14 N -0.70 -10.04 5.54 -62.57 -0.35 -10.38 16 15 C 0.60 9.05 7.81 -12.54 -0.10 8.95 16 16 O -0.53 -9.25 16.40 5.26 0.09 -9.17 16 17 C 0.01 0.11 7.32 -80.76 -0.59 -0.48 16 18 N -0.20 -2.40 11.80 34.46 0.41 -1.99 16 19 N -0.41 -3.70 6.85 32.34 0.22 -3.48 16 20 H 0.45 2.26 8.96 -190.48 -1.71 0.56 16 21 C 0.06 0.61 7.38 -84.21 -0.62 -0.01 16 22 C -0.12 -0.87 10.03 -39.81 -0.40 -1.26 16 23 C -0.08 -0.56 9.96 -39.89 -0.40 -0.95 16 24 C -0.14 -1.12 9.98 -39.88 -0.40 -1.52 16 25 C -0.04 -0.44 9.87 -39.78 -0.39 -0.84 16 26 C -0.11 -1.33 6.34 -105.05 -0.67 -2.00 16 27 C -0.09 -1.58 5.94 -28.18 -0.17 -1.75 16 28 C 0.14 2.96 6.58 -3.53 -0.02 2.94 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 2.45 6.41 -51.93 -0.33 2.12 16 32 H 0.09 1.63 7.73 -52.48 -0.41 1.22 16 33 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 35 H 0.41 5.49 8.20 -40.82 -0.33 5.16 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.14 1.54 7.65 -52.49 -0.40 1.14 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.49 362.84 -10.94 -43.43 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.93 Total: 3.38 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -4.91 Total: -3.08 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.37 Total: -56.71 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.49 -10.94 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001422249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.569 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds