Wall clock time and date at job start Tue Mar 31 2020 15:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21619 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.47390 * 120.00183 * 179.97438 * 15 14 13 18 18 N 1.31570 * 126.82001 * 0.03148 * 17 15 14 19 19 N 1.28393 * 111.96473 * 180.02562 * 18 17 15 20 20 H 0.97001 * 124.37155 * 180.02562 * 19 18 17 21 21 C 1.37044 * 111.25224 * 359.97438 * 19 18 17 22 22 C 1.39129 * 134.72406 * 179.97438 * 21 19 18 23 23 C 1.36687 * 119.78291 * 179.25174 * 22 21 19 24 24 C 1.38906 * 120.89545 * 0.62982 * 23 22 21 25 25 C 1.36718 * 120.51973 * 359.59445 * 24 23 22 26 26 C 1.39195 * 119.50983 * 0.02562 * 25 24 23 27 27 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 28 28 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 29 29 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 31 31 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 32 32 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 33 33 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 34 34 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 35 35 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 36 36 H 1.07997 * 120.10640 * 359.97438 * 22 21 19 37 37 H 1.07998 * 119.55561 * 180.22757 * 23 22 21 38 38 H 1.07994 * 119.74080 * 179.58004 * 24 23 22 39 39 H 1.07996 * 120.24654 * 179.97438 * 25 24 23 40 40 H 1.08995 * 109.43781 * 221.06658 * 27 12 11 41 41 H 1.09004 * 109.12988 * 101.67266 * 27 12 11 42 42 H 1.09002 * 109.78070 * 237.79078 * 28 9 7 43 43 H 1.09002 * 109.77840 * 358.60673 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6105 -7.7299 4.5848 17 6 -0.5907 -8.8841 2.9511 18 7 -1.1383 -9.0144 1.7619 19 7 -1.7197 -10.1507 1.6228 20 1 -2.1804 -10.4352 0.8181 21 6 -1.6042 -10.9100 2.7578 22 6 -2.0347 -12.1779 3.1355 23 6 -1.7274 -12.6571 4.3782 24 6 -0.9998 -11.8896 5.2788 25 6 -0.5684 -10.6386 4.9350 26 6 -0.8638 -10.1346 3.6715 27 6 2.2100 -4.5114 1.0801 28 6 1.8589 -3.6722 -0.1514 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7267 -2.5110 0.5007 31 1 0.0583 -1.4124 1.6622 32 1 -0.5059 -3.5069 2.9378 33 1 2.0837 -5.7793 3.4375 34 1 0.5684 -5.0815 4.0581 35 1 -0.0338 -6.6271 1.7722 36 1 -2.5999 -12.7862 2.4449 37 1 -2.0603 -13.6433 4.6662 38 1 -0.7732 -12.2840 6.2582 39 1 -0.0034 -10.0455 5.6387 40 1 2.3355 -5.5525 0.7830 41 1 3.1429 -4.1472 1.5106 42 1 1.0845 -4.1744 -0.7314 43 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001422249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:53 Heat of formation + Delta-G solvation = 71.008938 kcal Electronic energy + Delta-G solvation = -26151.516210 eV Core-core repulsion = 22390.939325 eV Total energy + Delta-G solvation = -3760.576885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51797 -40.64851 -39.29369 -38.70463 -36.43771 -34.60174 -33.60395 -32.59830 -31.45697 -31.21966 -30.83023 -28.65349 -26.34754 -24.84793 -24.36583 -23.99433 -23.29228 -22.71994 -21.31006 -19.53076 -19.26928 -18.68349 -17.89214 -17.28029 -17.02987 -16.93986 -16.84603 -16.17703 -15.99072 -15.82530 -15.41286 -15.23655 -15.12817 -14.93823 -14.58792 -14.41767 -13.95207 -13.62877 -13.27898 -13.17715 -12.93335 -12.89564 -12.77721 -12.58696 -12.26809 -12.24699 -12.11366 -12.04122 -11.71508 -11.40128 -11.23262 -11.22719 -10.68187 -10.19433 -9.79580 -9.67343 -9.10599 -8.75542 -7.88268 -5.29704 -0.23959 0.35718 0.83338 1.13380 1.47224 1.50046 1.56436 1.71248 2.17802 2.29449 2.51411 2.80847 3.22373 3.28634 3.47612 3.61154 3.73030 3.86517 3.96393 4.12783 4.25045 4.43303 4.43661 4.47509 4.52536 4.64579 4.72819 4.75830 4.83773 4.90857 5.05053 5.09290 5.20289 5.20706 5.27372 5.39269 5.46946 5.47381 5.57827 5.61118 5.75493 5.83418 6.08025 6.15327 6.33733 6.38592 6.73430 7.05701 7.13217 7.83078 8.37324 9.20269 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.034053 B = 0.002142 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.043012 B =13066.321323 C =13375.635585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.141 4.141 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.699 5.699 15 C 0.603 3.397 16 O -0.565 6.565 17 C -0.028 4.028 18 N -0.205 5.205 19 N -0.395 5.395 20 H 0.464 0.536 21 C 0.054 3.946 22 C -0.112 4.112 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.075 4.075 26 C -0.137 4.137 27 C -0.084 4.084 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.014 0.986 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -28.646 6.523 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.161 4.161 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.350 5.350 15 C 0.388 3.612 16 O -0.442 6.442 17 C -0.197 4.197 18 N -0.037 5.037 19 N -0.118 5.118 20 H 0.313 0.687 21 C -0.059 4.059 22 C -0.133 4.133 23 C -0.102 4.102 24 C -0.149 4.149 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.123 4.123 28 C 0.014 3.986 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.182 0.818 37 H 0.187 0.813 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.922 -27.902 6.301 29.026 hybrid contribution -0.081 1.061 -0.290 1.103 sum -5.004 -26.841 6.012 27.958 Atomic orbital electron populations 1.70164 1.06506 1.25867 1.56099 1.25762 0.96202 1.01399 1.01658 0.85307 0.77485 0.79187 0.78277 1.20043 1.22073 1.20611 1.19485 0.92567 0.85584 1.41085 0.91139 1.44405 1.29388 1.02148 1.57952 1.19407 0.87721 0.94931 0.89938 1.22979 0.97921 0.96244 0.98984 1.20589 0.98427 0.96542 0.98506 1.20351 0.96821 0.83669 0.94734 1.45905 1.55692 1.15094 1.18333 1.16880 0.78734 0.81168 0.84421 1.90763 1.51618 1.81987 1.19862 1.22592 1.07928 0.96854 0.92348 1.72845 1.07032 1.04506 1.19323 1.43106 1.44334 1.09474 1.14876 0.68699 1.19497 1.02200 0.96276 0.87950 1.20277 1.02815 0.91422 0.98779 1.21237 0.95897 1.01013 0.92037 1.21229 0.98841 0.93278 1.01601 1.20477 0.98795 0.96584 0.93702 1.19689 1.04113 0.93383 0.97204 1.20695 0.96463 1.00203 0.94936 1.21135 0.97376 0.85783 0.94348 0.94112 0.96857 0.92339 0.86909 0.90587 0.91332 0.75105 0.81825 0.81342 0.82895 0.86026 0.89626 0.91552 0.95620 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.86 11.08 21.65 0.24 -55.62 16 2 C -0.06 -3.12 5.01 84.86 0.43 -2.70 16 3 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.26 -14.26 9.71 84.03 0.82 -13.44 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.17 3.01 -703.36 -2.12 -33.29 16 10 C 0.21 10.06 5.23 85.42 0.45 10.51 16 11 C -0.14 -5.41 9.47 27.10 0.26 -5.16 16 12 C -0.14 -4.70 5.23 -15.14 -0.08 -4.78 16 13 C 0.17 4.91 5.66 85.63 0.48 5.40 16 14 N -0.70 -19.52 5.54 -470.13 -2.61 -22.13 16 15 C 0.60 18.32 7.81 86.65 0.68 19.00 16 16 O -0.56 -20.04 16.40 -4.09 -0.07 -20.11 16 17 C -0.03 -0.75 7.32 43.86 0.32 -0.43 16 18 N -0.21 -4.67 11.80 -44.88 -0.53 -5.20 16 19 N -0.39 -6.32 6.85 -51.60 -0.35 -6.67 16 20 H 0.46 3.55 8.96 -220.03 -1.97 1.57 16 21 C 0.05 0.94 7.38 39.18 0.29 1.22 16 22 C -0.11 -1.17 10.03 22.12 0.22 -0.95 16 23 C -0.08 -0.76 9.96 22.07 0.22 -0.54 16 24 C -0.13 -1.77 9.98 22.07 0.22 -1.55 16 25 C -0.08 -1.61 9.87 22.14 0.22 -1.39 16 26 C -0.14 -3.28 6.34 -20.14 -0.13 -3.41 16 27 C -0.08 -2.81 5.94 29.65 0.18 -2.63 16 28 C 0.14 5.65 6.58 86.25 0.57 6.22 16 29 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 3.24 6.41 -2.39 -0.02 3.22 16 32 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 33 H 0.08 2.20 8.11 -2.38 -0.02 2.18 16 34 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 35 H 0.41 10.77 8.20 -92.71 -0.76 10.01 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 37 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 38 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.12 2.89 7.65 -2.91 -0.02 2.86 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -73.31 362.84 0.06 -73.25 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -1.67 Total: 17.00 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 5.13 Total: 5.39 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.37 Total: -122.90 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.07 Total: -20.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -73.31 0.06 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001422249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.257 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds