Wall clock time and date at job start Tue Mar 31 2020 14:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99899 * 2 1 4 4 H 1.48507 * 109.47316 * 269.99951 * 3 2 1 5 5 H 1.48507 * 109.47360 * 29.99838 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99816 * 3 2 1 7 7 C 1.38811 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99975 * 197.36493 * 7 2 1 9 9 N 1.36940 * 119.99929 * 17.36135 * 7 2 1 10 10 C 1.46921 * 120.63024 * 207.66473 * 9 7 2 11 11 C 1.53192 * 108.77822 * 233.63468 * 10 9 7 12 12 C 1.53045 * 109.30748 * 305.36402 * 11 10 9 13 13 C 1.53030 * 109.53926 * 61.36778 * 12 11 10 14 14 H 1.09005 * 109.53024 * 58.59871 * 13 12 11 15 15 N 1.46499 * 109.50095 * 178.68033 * 13 12 11 16 16 C 1.34772 * 120.00381 * 204.83293 * 15 13 12 17 17 O 1.21487 * 120.00198 * 0.02562 * 16 15 13 18 18 C 1.48356 * 120.00007 * 180.02562 * 16 15 13 19 19 C 1.40175 * 119.20221 * 180.02562 * 18 16 15 20 20 C 1.36620 * 119.70711 * 179.97438 * 19 18 16 21 21 C 1.40594 * 118.21030 * 359.97438 * 20 19 18 22 22 C 1.40734 * 121.38127 * 180.02562 * 21 20 19 23 23 C 1.36584 * 118.12991 * 179.97438 * 22 21 20 24 24 C 1.39429 * 119.85062 * 0.25049 * 23 22 21 25 25 N 1.31009 * 121.84037 * 359.46159 * 24 23 22 26 26 C 1.33867 * 121.42035 * 0.54522 * 25 24 23 27 27 N 1.31880 * 119.20304 * 359.97438 * 18 16 15 28 28 C 1.46922 * 120.62882 * 27.68980 * 9 7 2 29 29 H 0.96997 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58717 * 353.41961 * 10 9 7 31 31 H 1.09001 * 109.58837 * 113.70056 * 10 9 7 32 32 H 1.08996 * 109.49827 * 65.31334 * 11 10 9 33 33 H 1.09005 * 109.49965 * 185.41764 * 11 10 9 34 34 H 1.08999 * 109.45902 * 301.34081 * 12 11 10 35 35 H 1.09005 * 109.45601 * 181.38922 * 12 11 10 36 36 H 0.97005 * 119.99851 * 24.83811 * 15 13 12 37 37 H 1.08003 * 120.14523 * 359.95251 * 19 18 16 38 38 H 1.07998 * 120.89604 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.93338 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.07354 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.07830 * 179.74855 * 24 23 22 42 42 H 1.09000 * 109.59348 * 6.58308 * 28 9 7 43 43 H 1.09004 * 109.58832 * 246.15595 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1783 11 6 2.0753 -4.6089 -0.9926 12 6 0.8198 -4.6883 -1.8642 13 6 0.5016 -3.3028 -2.4307 14 1 1.3499 -2.9439 -3.0136 15 7 -0.6819 -3.3859 -3.2901 16 6 -0.8699 -2.4776 -4.2679 17 8 -0.0577 -1.5902 -4.4370 18 6 -2.0688 -2.5615 -5.1377 19 6 -2.2474 -1.6084 -6.1499 20 6 -3.3474 -1.6762 -6.9573 21 6 -4.2697 -2.7145 -6.7381 22 6 -5.4252 -2.8477 -7.5304 23 6 -6.2759 -3.8813 -7.2597 24 6 -5.9877 -4.7630 -6.2187 25 7 -4.9083 -4.6388 -5.4868 26 6 -4.0322 -3.6489 -5.6976 27 7 -2.9402 -3.5316 -4.9406 28 6 0.2281 -2.3338 -1.2761 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5177 0.7457 31 1 1.0482 -4.0686 0.8279 32 1 2.9091 -4.2380 -1.5886 33 1 2.3147 -5.6005 -0.6083 34 1 -0.0193 -5.0357 -1.2614 35 1 0.9907 -5.3856 -2.6844 36 1 -1.3304 -4.0947 -3.1553 37 1 -1.5188 -0.8237 -6.2907 38 1 -3.5043 -0.9517 -7.7427 39 1 -5.6333 -2.1521 -8.3300 40 1 -7.1722 -4.0128 -7.8479 41 1 -6.6712 -5.5736 -6.0129 42 1 0.0985 -1.3252 -1.6685 43 1 -0.6742 -2.6411 -0.7472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007376355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:30 Heat of formation + Delta-G solvation = 61.161697 kcal Electronic energy + Delta-G solvation = -26996.479302 eV Core-core repulsion = 23235.475409 eV Total energy + Delta-G solvation = -3761.003893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46978 -39.59267 -37.91447 -37.02938 -34.52124 -34.02522 -32.65101 -31.43625 -31.15788 -29.98146 -28.80847 -25.80622 -25.22176 -24.49738 -22.89370 -22.31906 -21.99039 -20.43426 -19.49356 -18.88476 -18.01605 -17.42955 -16.71686 -16.25139 -15.63792 -15.44577 -15.04209 -14.81441 -14.46231 -14.26398 -14.18264 -13.93085 -13.55499 -13.44214 -13.33144 -12.98994 -12.42720 -12.30022 -12.21057 -12.16848 -11.83491 -11.38611 -10.99560 -10.91001 -10.72204 -10.70070 -10.42777 -10.20693 -10.05255 -9.89725 -9.70282 -9.48446 -9.22913 -9.21510 -9.17192 -8.51650 -8.38981 -6.61788 -5.71283 -3.14573 -0.18570 0.24638 1.59535 2.24014 3.16883 3.27801 3.45806 3.52476 3.52799 3.55202 3.96497 4.09442 4.30012 4.36164 4.44877 4.56672 4.66393 4.79874 5.00399 5.07121 5.36142 5.40902 5.44661 5.53710 5.56905 5.60307 5.67968 5.75916 5.85565 5.89586 6.12035 6.22021 6.29041 6.37928 6.47548 6.53336 6.74784 6.81357 6.92766 7.01299 7.05849 7.34079 7.76164 7.77698 7.87148 7.97719 8.50442 8.54704 9.26844 9.91055 10.46157 11.36573 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003158 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.343796 B = 8863.986057 C = 9894.023111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.114 3.886 14 H 0.084 0.916 15 N -0.693 5.693 16 C 0.561 3.439 17 O -0.519 6.519 18 C 0.158 3.842 19 C -0.127 4.127 20 C -0.049 4.049 21 C -0.146 4.146 22 C -0.045 4.045 23 C -0.178 4.178 24 C 0.156 3.844 25 N -0.458 5.458 26 C 0.302 3.698 27 N -0.437 5.437 28 C 0.167 3.833 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.405 0.595 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.168 0.832 42 H 0.095 0.905 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.214 -9.061 -17.028 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.009 3.991 14 H 0.103 0.897 15 N -0.343 5.343 16 C 0.343 3.657 17 O -0.393 6.393 18 C 0.000 4.000 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.151 4.151 22 C -0.072 4.072 23 C -0.198 4.198 24 C -0.021 4.021 25 N -0.167 5.167 26 C 0.063 3.937 27 N -0.150 5.150 28 C 0.039 3.961 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.241 0.759 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.185 0.815 42 H 0.113 0.887 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.321 -9.477 -15.689 21.544 hybrid contribution -0.467 1.683 -1.320 2.189 sum -11.788 -7.795 -17.009 22.114 Atomic orbital electron populations 1.70028 1.05322 1.25500 1.53405 1.25042 0.95266 0.98497 1.00554 0.86293 0.79043 0.83647 0.77793 1.21259 1.21826 1.20433 1.19163 0.92747 0.84826 1.41765 0.91533 1.43968 1.36015 1.01658 1.49452 1.20966 0.97746 0.86850 0.92904 1.21997 0.96911 0.99361 0.98710 1.21677 0.99029 0.95853 0.98902 1.22099 0.86709 0.97295 0.92989 0.89744 1.45976 1.26177 1.30148 1.31992 1.17778 0.84297 0.82805 0.80791 1.90839 1.43991 1.33929 1.70552 1.21730 0.93585 0.90484 0.94173 1.21924 0.98797 0.99724 0.94315 1.21457 0.92113 0.95864 0.98173 1.19729 0.97765 0.98505 0.99082 1.21492 0.91703 0.96890 0.97082 1.22035 1.01381 0.96466 0.99873 1.23133 0.92456 0.96993 0.89535 1.67642 1.02483 1.19741 1.26814 1.19233 0.92422 0.91211 0.90811 1.67422 1.01350 1.20954 1.25245 1.21103 0.88865 0.98866 0.87217 0.93682 0.92613 0.96322 0.92091 0.92555 0.92042 0.92956 0.75924 0.82387 0.83289 0.83880 0.83881 0.81518 0.88677 0.96292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 11.19 55.49 0.62 -26.61 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 22.70 29.59 -169.99 -5.03 17.67 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -7.27 9.58 -15.06 -0.14 -7.41 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -15.26 2.99 -172.32 -0.52 -15.77 16 10 C 0.14 3.01 6.52 -3.71 -0.02 2.99 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.12 -2.00 5.35 -26.69 -0.14 -2.14 16 13 C 0.11 2.33 2.60 -67.81 -0.18 2.16 16 14 H 0.08 1.90 7.58 -51.93 -0.39 1.51 16 15 N -0.69 -12.75 5.07 -54.47 -0.28 -13.03 16 16 C 0.56 10.66 7.78 -12.10 -0.09 10.56 16 17 O -0.52 -11.49 15.94 5.38 0.09 -11.40 16 18 C 0.16 2.52 6.75 -82.95 -0.56 1.96 16 19 C -0.13 -1.64 9.54 -39.44 -0.38 -2.02 16 20 C -0.05 -0.49 9.89 -39.28 -0.39 -0.88 16 21 C -0.15 -1.59 5.75 -106.68 -0.61 -2.21 16 22 C -0.04 -0.33 9.90 -39.24 -0.39 -0.72 16 23 C -0.18 -1.11 10.04 -39.74 -0.40 -1.51 16 24 C 0.16 1.31 11.14 -17.46 -0.19 1.11 16 25 N -0.46 -5.99 10.43 -12.59 -0.13 -6.12 16 26 C 0.30 4.27 7.62 -157.90 -1.20 3.07 16 27 N -0.44 -6.98 9.56 -9.18 -0.09 -7.07 16 28 C 0.17 4.19 4.89 -3.71 -0.02 4.17 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 6.73 7.90 -40.82 -0.32 6.41 16 37 H 0.16 1.93 7.60 -52.48 -0.40 1.54 16 38 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.10 2.78 6.04 -51.93 -0.31 2.47 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -35.58 358.76 -10.51 -46.09 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.62 Total: 4.05 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -4.97 Total: 6.79 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.39 Total: -68.60 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.58 -10.51 -46.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007376355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.255 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds