Wall clock time and date at job start Tue Mar 31 2020 14:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99899 * 2 1 4 4 H 1.48507 * 109.47316 * 269.99951 * 3 2 1 5 5 H 1.48507 * 109.47360 * 29.99838 * 3 2 1 6 6 H 1.48499 * 109.47267 * 149.99816 * 3 2 1 7 7 C 1.38811 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99975 * 197.36493 * 7 2 1 9 9 N 1.36940 * 119.99929 * 17.36135 * 7 2 1 10 10 C 1.46921 * 120.63024 * 207.66473 * 9 7 2 11 11 C 1.53192 * 108.77822 * 233.63468 * 10 9 7 12 12 C 1.53045 * 109.30748 * 305.36402 * 11 10 9 13 13 C 1.53030 * 109.53926 * 61.36778 * 12 11 10 14 14 H 1.09005 * 109.53024 * 58.59871 * 13 12 11 15 15 N 1.46499 * 109.50095 * 178.68033 * 13 12 11 16 16 C 1.34772 * 120.00381 * 204.83293 * 15 13 12 17 17 O 1.21487 * 120.00198 * 0.02562 * 16 15 13 18 18 C 1.48356 * 120.00007 * 180.02562 * 16 15 13 19 19 C 1.40175 * 119.20221 * 180.02562 * 18 16 15 20 20 C 1.36620 * 119.70711 * 179.97438 * 19 18 16 21 21 C 1.40594 * 118.21030 * 359.97438 * 20 19 18 22 22 C 1.40734 * 121.38127 * 180.02562 * 21 20 19 23 23 C 1.36584 * 118.12991 * 179.97438 * 22 21 20 24 24 C 1.39429 * 119.85062 * 0.25049 * 23 22 21 25 25 N 1.31009 * 121.84037 * 359.46159 * 24 23 22 26 26 C 1.33867 * 121.42035 * 0.54522 * 25 24 23 27 27 N 1.31880 * 119.20304 * 359.97438 * 18 16 15 28 28 C 1.46922 * 120.62882 * 27.68980 * 9 7 2 29 29 H 0.96997 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58717 * 353.41961 * 10 9 7 31 31 H 1.09001 * 109.58837 * 113.70056 * 10 9 7 32 32 H 1.08996 * 109.49827 * 65.31334 * 11 10 9 33 33 H 1.09005 * 109.49965 * 185.41764 * 11 10 9 34 34 H 1.08999 * 109.45902 * 301.34081 * 12 11 10 35 35 H 1.09005 * 109.45601 * 181.38922 * 12 11 10 36 36 H 0.97005 * 119.99851 * 24.83811 * 15 13 12 37 37 H 1.08003 * 120.14523 * 359.95251 * 19 18 16 38 38 H 1.07998 * 120.89604 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.93338 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.07354 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.07830 * 179.74855 * 24 23 22 42 42 H 1.09000 * 109.59348 * 6.58308 * 28 9 7 43 43 H 1.09004 * 109.58832 * 246.15595 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6548 0.1783 11 6 2.0753 -4.6089 -0.9926 12 6 0.8198 -4.6883 -1.8642 13 6 0.5016 -3.3028 -2.4307 14 1 1.3499 -2.9439 -3.0136 15 7 -0.6819 -3.3859 -3.2901 16 6 -0.8699 -2.4776 -4.2679 17 8 -0.0577 -1.5902 -4.4370 18 6 -2.0688 -2.5615 -5.1377 19 6 -2.2474 -1.6084 -6.1499 20 6 -3.3474 -1.6762 -6.9573 21 6 -4.2697 -2.7145 -6.7381 22 6 -5.4252 -2.8477 -7.5304 23 6 -6.2759 -3.8813 -7.2597 24 6 -5.9877 -4.7630 -6.2187 25 7 -4.9083 -4.6388 -5.4868 26 6 -4.0322 -3.6489 -5.6976 27 7 -2.9402 -3.5316 -4.9406 28 6 0.2281 -2.3338 -1.2761 29 1 -0.4850 0.8400 0.0004 30 1 2.7402 -3.5177 0.7457 31 1 1.0482 -4.0686 0.8279 32 1 2.9091 -4.2380 -1.5886 33 1 2.3147 -5.6005 -0.6083 34 1 -0.0193 -5.0357 -1.2614 35 1 0.9907 -5.3856 -2.6844 36 1 -1.3304 -4.0947 -3.1553 37 1 -1.5188 -0.8237 -6.2907 38 1 -3.5043 -0.9517 -7.7427 39 1 -5.6333 -2.1521 -8.3300 40 1 -7.1722 -4.0128 -7.8479 41 1 -6.6712 -5.5736 -6.0129 42 1 0.0985 -1.3252 -1.6685 43 1 -0.6742 -2.6411 -0.7472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007376355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:30 Heat of formation + Delta-G solvation = 35.870190 kcal Electronic energy + Delta-G solvation = -26997.576024 eV Core-core repulsion = 23235.475409 eV Total energy + Delta-G solvation = -3762.100615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35660 -40.98913 -39.22857 -38.39710 -35.96184 -35.18504 -34.44910 -32.34527 -32.07071 -31.86691 -30.41592 -27.28285 -26.80812 -25.34227 -24.02843 -23.74989 -23.55125 -21.85340 -21.14391 -19.87756 -19.20732 -18.75097 -18.20815 -17.32342 -17.12999 -16.79762 -16.48012 -15.87845 -15.81507 -15.64064 -15.39257 -15.25877 -15.12377 -14.78749 -14.49291 -14.16239 -14.05099 -13.99030 -13.51807 -13.26505 -12.95236 -12.88210 -12.69829 -12.54169 -12.31220 -12.16448 -12.05958 -11.91728 -11.72001 -11.65724 -11.31422 -11.15134 -10.58607 -10.25794 -10.13444 -10.05713 -9.90784 -8.72657 -7.90289 -5.36943 -1.02472 -0.56586 0.81784 1.26942 1.40841 1.46250 1.52590 1.89563 2.12931 2.47221 2.53766 3.03811 3.25212 3.35217 3.42507 3.60507 3.70325 3.78979 3.90180 3.93583 4.04429 4.09313 4.21246 4.25054 4.44210 4.46001 4.55447 4.64280 4.77967 4.80447 4.88716 4.93961 5.06361 5.12225 5.15781 5.17248 5.19271 5.26898 5.35013 5.49478 5.59098 5.60774 5.71177 6.10583 6.33960 6.46904 6.98523 7.07476 7.11970 7.81868 8.32408 9.14959 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.003158 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.343796 B = 8863.986057 C = 9894.023111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.264 4.264 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.119 4.119 12 C -0.109 4.109 13 C 0.128 3.872 14 H 0.061 0.939 15 N -0.689 5.689 16 C 0.557 3.443 17 O -0.562 6.562 18 C 0.130 3.870 19 C -0.149 4.149 20 C -0.022 4.022 21 C -0.154 4.154 22 C -0.040 4.040 23 C -0.160 4.160 24 C 0.160 3.840 25 N -0.510 5.510 26 C 0.269 3.731 27 N -0.465 5.465 28 C 0.181 3.819 29 H 0.247 0.753 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.155 0.845 38 H 0.198 0.802 39 H 0.188 0.812 40 H 0.192 0.808 41 H 0.201 0.799 42 H 0.046 0.954 43 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 -10.420 -19.746 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.394 4.394 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.022 3.978 14 H 0.079 0.921 15 N -0.339 5.339 16 C 0.342 3.658 17 O -0.440 6.440 18 C -0.025 4.025 19 C -0.170 4.170 20 C -0.049 4.049 21 C -0.159 4.159 22 C -0.066 4.066 23 C -0.179 4.179 24 C -0.016 4.016 25 N -0.220 5.220 26 C 0.031 3.969 27 N -0.179 5.179 28 C 0.054 3.946 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.251 0.749 37 H 0.173 0.827 38 H 0.215 0.785 39 H 0.206 0.794 40 H 0.209 0.791 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -13.277 -10.887 -18.398 25.165 hybrid contribution -0.118 1.964 -0.563 2.046 sum -13.394 -8.923 -18.961 24.870 Atomic orbital electron populations 1.70200 1.06858 1.25647 1.55202 1.25862 0.96058 1.01833 1.01116 0.85282 0.78482 0.79530 0.77316 1.21907 1.21826 1.18467 1.19546 0.93146 0.86085 1.40664 0.91032 1.44255 1.35867 1.02873 1.50259 1.21200 0.97674 0.85552 0.94618 1.21894 0.96651 1.00308 0.96955 1.21658 0.99316 0.93791 0.99892 1.21683 0.86596 0.98376 0.91126 0.92068 1.45877 1.25862 1.30475 1.31697 1.18378 0.84931 0.81727 0.80773 1.90787 1.45900 1.35437 1.71867 1.21223 0.93149 0.92714 0.95440 1.21955 1.00571 0.99560 0.94964 1.21951 0.89834 0.95646 0.97428 1.20050 0.99365 0.97767 0.98701 1.22027 0.89781 0.97793 0.97038 1.22571 1.02230 0.94592 0.98555 1.23933 0.91078 0.97757 0.88839 1.67623 1.04266 1.20724 1.29361 1.19533 0.92407 0.92894 0.92096 1.67189 1.02509 1.21394 1.26766 1.20746 0.88099 0.97443 0.88331 0.94416 0.92178 0.96235 0.92529 0.88277 0.91208 0.89793 0.74871 0.82710 0.78454 0.79440 0.79103 0.78249 0.93521 0.98741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.85 11.19 21.65 0.24 -59.60 16 2 C -0.05 -3.22 4.91 84.86 0.42 -2.80 16 3 Si 0.97 48.43 29.59 68.60 2.03 50.46 16 4 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.26 -15.55 9.58 84.03 0.81 -14.75 16 8 H 0.07 4.04 7.89 -2.91 -0.02 4.02 16 9 N -0.61 -32.84 2.99 -699.09 -2.09 -34.93 16 10 C 0.13 5.72 6.52 86.36 0.56 6.28 16 11 C -0.12 -3.96 6.08 30.67 0.19 -3.77 16 12 C -0.11 -3.64 5.35 30.62 0.16 -3.48 16 13 C 0.13 5.51 2.60 45.07 0.12 5.62 16 14 H 0.06 2.93 7.58 -2.38 -0.02 2.91 16 15 N -0.69 -27.21 5.07 -444.56 -2.25 -29.46 16 16 C 0.56 23.11 7.78 86.94 0.68 23.78 16 17 O -0.56 -27.29 15.94 -3.68 -0.06 -27.35 16 18 C 0.13 4.47 6.75 42.30 0.29 4.75 16 19 C -0.15 -4.02 9.54 22.36 0.21 -3.81 16 20 C -0.02 -0.40 9.89 22.47 0.22 -0.18 16 21 C -0.15 -3.02 5.75 -21.20 -0.12 -3.14 16 22 C -0.04 -0.39 9.90 22.49 0.22 -0.16 16 23 C -0.16 -1.16 10.04 22.17 0.22 -0.94 16 24 C 0.16 2.18 11.14 85.10 0.95 3.13 16 25 N -0.51 -12.96 10.43 -193.75 -2.02 -14.98 16 26 C 0.27 7.62 7.62 135.11 1.03 8.65 16 27 N -0.47 -15.72 9.56 -182.96 -1.75 -17.47 16 28 C 0.18 9.73 4.89 86.37 0.42 10.15 16 29 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.41 14.70 7.90 -92.70 -0.73 13.96 16 37 H 0.16 4.10 7.60 -2.91 -0.02 4.08 16 38 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.19 -0.38 8.06 -2.91 -0.02 -0.40 16 41 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.05 2.96 6.04 -2.39 -0.01 2.94 16 43 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: -1.00 -87.32 358.76 0.78 -86.54 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.31 Total: 17.44 kcal Atomic # 6 Polarization: 22.97 SS G_CDS: 6.37 Total: 29.34 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -7.87 Total: -156.44 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -87.32 0.78 -86.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007376355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.413 kcal (2) G-P(sol) polarization free energy of solvation -87.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds